# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1z5vA 474 3.20e+00 1j8mF 297 3.31e+00 1ng1 a.24.13.1,c.37.1.10 62742,62743 1mioA 534 5.87e+00 1qguA c.92.2.3 35601 1adeA 431 7.48e+00 1adeA c.37.1.10 32213 1tvoA 368 7.78e+00 1v7lA 163 8.50e+00 1hf2A 210 8.55e+00 1hf2A b.80.3.1,c.102.1.1 60992,60993 1pme 380 9.09e+00 1hcl d.144.1.7 41653 3erk 364 9.95e+00 1hcl d.144.1.7 41654 1jvpP 298 1.05e+01 d.144.1.7 67371 1ywrA 360 1.09e+01 1m2xA 223 1.17e+01 d.157.1.1 84764 1yqzA 438 1.25e+01 2gfsA 372 1.32e+01 1v95A 130 1.34e+01 c.51.1.1 108435 1qf5A 431 1.37e+01 1adeA c.37.1.10 32212 1n6eA 1071 1.43e+01 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 1hcl 298 1.52e+01 1hcl d.144.1.7 41593 1zzlA 351 1.55e+01 1zz2A 360 1.55e+01 1r3cA 366 1.55e+01 d.144.1.7 96906 1a6o 332 1.64e+01 1a6o 1k32A 1045 1.74e+01 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1gz8A 299 1.80e+01 d.144.1.7 83405 1mp8A 281 1.80e+01 d.144.1.7 91384 1blxA 326 1.86e+01 1hcl d.144.1.7 41596 1tksA 204 1.87e+01 d.115.1.2 107114 1qdlB 195 1.88e+01 1qdlB c.23.16.1 31437 1bmc 221 1.97e+01 1a7tA d.157.1.1 42038 1e1xA 299 2.05e+01 1hcl d.144.1.7 59157 2bmhA 455 2.05e+01 1bu7A a.104.1.1 18941 1ojjA 402 2.06e+01 b.29.1.10 93130 1jmeA 455 2.11e+01 a.104.1.1 66885 1zjkA 403 2.23e+01 1mqoA 227 2.26e+01 d.157.1.1 103846 1ufoA 238 2.30e+01 c.69.1.27 99344 2a19B 284 2.38e+01 1j8yF 297 2.38e+01 1ng1 a.24.13.1,c.37.1.10 62747,62748 1vid 221 2.41e+01 1vid c.66.1.1 34178 1dl2A 511 2.42e+01 1dl2A a.102.2.1 18844 1fgkA 310 2.44e+01 1fgkA d.144.1.7 41693 1h1dA 221 2.72e+01 c.66.1.1 83452 2azpA 318 2.73e+01 1pmnA 364 2.74e+01 d.144.1.7 94907 1x8hA 228 2.78e+01 1fjhA 257 2.80e+01 1fjhB c.2.1.2 29870 1npdA 288 2.87e+01 c.2.1.7,c.58.1.5 80681,80682 1bu7A 455 2.95e+01 1bu7A a.104.1.1 18937 1wbsA 360 2.97e+01 1jpzA 473 3.00e+01 a.104.1.1 67069 1u5uA 374 3.00e+01 1vi4A 174 3.01e+01 c.8.7.1 100731 1vi2A 300 3.16e+01 c.2.1.7,c.58.1.5 100726,100727 2hgsA 474 3.20e+01 2hgsA c.30.1.4,d.142.1.6 31722,75997 1uirA 314 3.21e+01 c.66.1.17 99429 1h0hA 977 3.22e+01 b.52.2.2,c.81.1.1 76435,76436 1m2rA 327 3.27e+01 d.144.1.7 84760 2bc2B 227 3.29e+01 1a7tA d.157.1.1 42032 1j1bA 420 3.30e+01 d.144.1.7 90758 2df7A 458 3.35e+01 1i74A 309 3.41e+01 1i74A c.107.1.1 61867 1zxxA 319 3.57e+01 1om1A 332 3.66e+01 d.144.1.7 93347 1v72A 356 3.76e+01 1jwhA 337 3.76e+01 d.144.1.7 71913 1fjhB 257 3.89e+01 1fjhB c.2.1.2 29871 2b5dX 528 3.93e+01 2bc2A 227 4.01e+01 1a7tA d.157.1.1 42031 1b7yB 785 4.02e+01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16301,16302,25312,39311,40780,41456 1opjA 293 4.03e+01 d.144.1.7 87230 1a8s 273 4.04e+01 1brt c.69.1.12 34710 2cunA 410 4.16e+01 1lp4A 332 4.32e+01 d.144.1.7 74170 1oywA 523 4.37e+01 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1q5xA 161 4.37e+01 c.8.7.1 95947 1i3kA 348 4.39e+01 1xel c.2.1.2 61595 1lpuA 332 4.54e+01 d.144.1.7 74177 1v3fA 120 4.72e+01 a.4.5.31 100289 2di4A 238 4.77e+01 1zzoA 136 4.82e+01 1eiyB 785 4.89e+01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16305,16306,25314,39313,40782,41458 1in4A 334 4.94e+01 1hqcA a.4.5.11,c.37.1.20 62597,62598 1q41A 424 4.98e+01 d.144.1.7 95774 1ymiA 334 4.99e+01 1pysB 785 5.01e+01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16299,16300,25311,39310,40779,41455 1pmd 675 5.04e+01 1pmd d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37491,37492,42562,42771 1ru3A 732 5.05e+01 e.26.1.3 97835 1g3qA 237 5.10e+01 1hyqA c.37.1.10 60237 1ek6A 348 5.12e+01 1xel c.2.1.2 29800 1fc6A 388 5.13e+01 1fc6A b.36.1.3,c.14.1.2 64738,64739 1wcdJ 441 5.28e+01 1neu 124 5.40e+01 1neu b.1.1.1 19704 1xd3A 230 5.50e+01 1dvfD 120 5.59e+01 1mfa b.1.1.1 20107 2frnA 278 5.63e+01 2fsjA 346 5.79e+01 1j97A 211 5.82e+01 1f5sA c.108.1.4 62753 1in6A 334 6.04e+01 1hqcA a.4.5.11,c.37.1.20 62601,62602 1pk6A 133 6.28e+01 b.22.1.1 94801 1ui0A 205 6.32e+01 c.18.1.2 99411 1l7mA 211 6.36e+01 c.108.1.4 73664 1d3uB 201 6.40e+01 1aisB a.74.1.2,a.74.1.2 18386,18387 1f5sA 211 6.43e+01 1f5sA c.108.1.4 59656 1o04A 500 6.59e+01 c.82.1.1 86508 1zoiA 276 6.61e+01 2btoA 473 6.64e+01 1dymA 402 6.75e+01 1celA b.29.1.10 24304 1wpnA 188 6.77e+01 1ot5A 477 6.83e+01 b.18.1.20,c.41.1.1 87409,87410 1uu3A 310 6.85e+01 d.144.1.7 99999 1p4oA 322 6.86e+01 d.144.1.7 87775 1dd6A 228 6.93e+01 1a7tA d.157.1.1 42054 2g0qA 173 6.97e+01 1a81A 254 7.00e+01 1a81A d.93.1.1,d.93.1.1 40507,40508 1va4A 279 7.04e+01 c.69.1.12 108458 2ffjA 300 7.05e+01 1aurA 218 7.16e+01 1auoA c.69.1.14 34718 1euhA 475 7.27e+01 1euhA c.82.1.1 35369 1ibsA 317 7.28e+01 c.61.1.2,c.61.1.2 66107,66108 1rrmA 386 7.32e+01 e.22.1.2 105081 1nsyA 271 7.33e+01 2nsyA c.26.2.1 31614 1i39A 225 7.44e+01 1ekeA c.55.3.1 61585 1uf2A 1019 7.50e+01 e.28.1.2 99289 1el4A 195 7.56e+01 1ej3A a.39.1.5 59453 1mjgM 729 7.73e+01 e.26.1.3 79204 2fnoA 248 7.81e+01 2fvgA 340 7.96e+01 1ih8A 271 7.99e+01 2nsyA c.26.2.1 62377 1siqA 392 8.04e+01 a.29.3.1,e.6.1.1 105585,105586 1chmA 401 8.13e+01 1chmA c.55.2.1,d.127.1.1 33545,41142 2g76A 335 8.24e+01 1zgmA 248 8.45e+01 2evaA 307 8.47e+01 1z57A 339 8.51e+01 1b65A 375 8.57e+01 1b65A d.154.1.1 42020 1zy4A 303 8.59e+01 2a6mA 155 8.64e+01 1r64A 481 8.67e+01 b.18.1.20,c.41.1.1 97140,97141 1oaoC 729 8.71e+01 e.26.1.3 86746 1ag8A 499 8.75e+01 1bpwA c.82.1.1 35341 1f1eA 154 8.79e+01 a.22.1.2 64927 1autC 250 8.86e+01 5ptp b.47.1.2 26348 1qmeA 702 8.89e+01 1pmd d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 1a7tA 232 8.99e+01 1a7tA d.157.1.1 42041 1o6yA 299 8.99e+01 d.144.1.7 81106