# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1v7lA 163 5.41e-02 1qmeA 702 8.29e-01 1pmd d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 2aa4A 289 1.31e+00 1hf2A 210 2.30e+00 1hf2A b.80.3.1,c.102.1.1 60992,60993 2ganA 190 2.55e+00 1vddA 228 2.64e+00 e.49.1.1 108519 1h16A 759 4.23e+00 c.7.1.1 76462 1xdnA 277 6.04e+00 1rliA 184 6.07e+00 c.23.5.6 97647 1y0bA 197 6.56e+00 1vbkA 307 6.66e+00 1p42A 270 6.72e+00 d.14.1.7,d.14.1.7 87754,87755 1gheA 177 7.85e+00 d.108.1.1 76222 1xvaA 292 8.37e+00 1xvaA c.66.1.5 34183 1mrzA 293 8.59e+00 b.43.5.1,c.26.1.3 91452,91453 1uwzA 136 8.89e+00 c.97.1.1 108081 1o88A 353 9.30e+00 b.80.1.1 81178 1r6xA 395 9.41e+00 b.122.1.3,c.26.1.5 97167,97168 1iz5A 249 9.52e+00 d.131.1.2,d.131.1.2 83834,83835 1xebA 150 9.52e+00 1yavA 159 1.02e+01 1cs1A 386 1.02e+01 1ibjA c.67.1.3 34399 1ek9A 428 1.02e+01 1ek9A f.5.1.1 43809 2fe7A 166 1.03e+01 1bg6 359 1.04e+01 1bg6 a.100.1.5,c.2.1.6 18810,30214 1qqp2 218 1.11e+01 1qqp2 1zm8A 259 1.15e+01 1d2oA 187 1.17e+01 1d2oA b.3.5.1,b.3.5.1 22625,22626 2gfaA 119 1.18e+01 1g8lA 411 1.26e+01 1g8lA b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1geeA 261 1.29e+01 c.2.1.2 90509 2gjgA 248 1.39e+01 1fc6A 388 1.43e+01 1fc6A b.36.1.3,c.14.1.2 64738,64739 2f8aA 208 1.44e+01 1w99A 558 1.50e+01 1fs7A 485 1.52e+01 1qdbA a.138.1.3 19691 1nr0A 611 1.54e+01 b.69.4.1,b.69.4.1 86078,86079 1nbwA 607 1.55e+01 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 1cjcA 460 1.57e+01 1cjcA c.3.1.1,c.4.1.1 30319,30604 1z1dA 103 1.61e+01 2bsxA 253 1.63e+01 1ln1A 214 1.68e+01 d.129.3.2 74038 1qlmA 316 1.70e+01 1qlmA d.147.1.1 41765 2bibA 547 1.70e+01 1x9pA 523 1.72e+01 2apr 325 1.72e+01 2er7E b.50.1.2 26819 1c1yB 77 1.77e+01 1c1yB d.15.1.5 37618 1yovA 537 1.79e+01 8rucI 123 1.80e+01 1rboC d.73.1.1 39629 1k78A 149 1.82e+01 a.4.1.5,a.4.1.5 68255,68256 2c46A 241 1.83e+01 2d13A 227 1.83e+01 2g76A 335 1.84e+01 1rqpA 299 1.88e+01 b.141.1.1,c.132.1.1 97754,97755 2coeA 120 1.93e+01 2evaA 307 2.02e+01 1y0yA 353 2.16e+01 2beiA 170 2.23e+01 1g57A 217 2.23e+01 1g57A d.115.1.2 60253 1ja9A 274 2.32e+01 c.2.1.2 62817 2gasA 307 2.34e+01 1fsgA 233 2.35e+01 1qk3A c.61.1.1 34029 1c3pA 375 2.38e+01 1c3pA c.42.1.2 32606 1zemA 262 2.39e+01 1w15A 153 2.48e+01 b.7.1.2 109041 2f1rA 171 2.55e+01 1xf1A 926 2.55e+01 1rifA 282 2.69e+01 c.37.1.23 97507 2gp4A 628 2.71e+01 1l3kA 196 2.74e+01 d.58.7.1,d.58.7.1 73539,73540 1mx3A 347 2.76e+01 c.2.1.4,c.23.12.1 79638,79639 1ignA 246 2.80e+01 1ignA a.4.1.6,a.4.1.6 16048,16049 2gwgA 350 2.87e+01 1uheA 97 2.88e+01 1h8eH 146 2.94e+01 1e79H b.93.1.1 60757 2atrA 138 3.03e+01 1f2vA 219 3.05e+01 1f2vA c.23.17.1 59627 1zc1A 208 3.08e+01 1rxyA 253 3.15e+01 c.56.2.1 98065 1wraA 308 3.24e+01 1nnfA 309 3.24e+01 c.94.1.1 85903 1g3qA 237 3.37e+01 1hyqA c.37.1.10 60237 1vhsA 175 3.51e+01 d.108.1.1 100698 1xkwA 665 3.54e+01 1mxmA 254 3.84e+01 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 2gefA 217 3.86e+01 1bf6A 291 4.02e+01 1pscA c.1.9.3 29065 1vc3B 97 4.04e+01 1q67A 231 4.05e+01 b.55.1.7 95960 1v95A 130 4.09e+01 c.51.1.1 108435 1yvoA 172 4.13e+01 1g0oA 283 4.14e+01 1ybvA c.2.1.2 60181 1lzlA 323 4.17e+01 c.69.1.2 78306 2bhgA 209 4.32e+01 1wn5A 130 4.34e+01 1auoA 218 4.36e+01 1auoA c.69.1.14 34716 1vctA 205 4.41e+01 1s4cA 155 4.41e+01 1ahl 49 4.45e+01 1ahl g.9.1.1 44601 1x6vA 630 4.49e+01 1st9A 143 4.49e+01 c.47.1.10 98987 1qhtA 775 4.50e+01 1tgoA c.55.3.5,e.8.1.1 33722,43011 1je0A 236 4.51e+01 c.56.2.1 66581 1e19A 314 4.56e+01 1b7bA c.73.1.1 34967 1r0vA 305 4.60e+01 c.52.2.1,c.52.2.1,d.75.1.1 96742,96743,96744 1r53A 382 4.63e+01 d.258.1.1 97063 1v8aA 265 4.66e+01 c.72.1.2 100494 1b34B 118 4.67e+01 1b34B b.38.1.1 24797 2gn4A 344 4.75e+01 2fb1A 226 4.77e+01 1u3eM 174 4.80e+01 d.4.1.3,d.285.1.1 107640,107641 1wwrA 171 4.82e+01 1xbiA 120 4.85e+01 1vkcA 158 4.99e+01 1imjA 210 5.07e+01 c.69.1.23 71246 2g9iA 249 5.10e+01 2f9sA 151 5.18e+01 1vi4A 174 5.21e+01 c.8.7.1 100731 1yloA 348 5.29e+01 1jbkA 195 5.34e+01 c.37.1.20 71631 1el5A 389 5.35e+01 1b3mA c.3.1.2,d.16.1.3 30369,37937 1mkyA 439 5.35e+01 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 2g8lA 299 5.35e+01 1dbwA 126 5.38e+01 1dbwA c.23.1.1 31095 1jeoA 180 5.40e+01 c.80.1.3 66611 1mtpB 43 5.42e+01 1duvG 333 5.46e+01 1othA c.78.1.1,c.78.1.1 35228,35229 1agqA 135 5.52e+01 1agqA g.17.1.2 44789 2fp7B 172 5.57e+01 1iro 54 5.57e+01 1rb9 g.41.5.1 45223 1sc6A 404 5.60e+01 1vjpA 394 5.66e+01 c.2.1.3,d.81.1.3 100828,100829 1t4wA 196 5.73e+01 b.2.5.2 106427 1q33A 292 5.74e+01 d.113.1.1 95657 1zsoA 164 5.76e+01 2f06A 144 5.91e+01 2bgkA 278 5.94e+01 1gpmA 525 5.98e+01 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1vicA 262 6.05e+01 c.68.1.13 100756 1f46A 140 6.09e+01 1f46A d.129.4.1 59643 1s3cA 141 6.11e+01 1cliA 345 6.22e+01 1cliA d.79.4.1,d.139.1.1 39816,41459 1qauA 112 6.25e+01 1qauA b.36.1.1 24779 1fjrA 195 6.32e+01 1fjrA b.102.1.1 59855 1i12A 160 6.33e+01 1i21A d.108.1.1 61515 2fuvA 549 6.53e+01 1wddS 128 6.60e+01 1ijqA 316 6.62e+01 1ijqA b.68.5.1,g.3.11.1 62506,62507 1w66A 232 6.87e+01 1oi0A 124 6.92e+01 c.97.3.1 93045 1sdsA 117 6.93e+01 d.79.3.1 105439 1inlA 296 7.01e+01 c.66.1.17 66220 1k6dA 220 7.13e+01 c.124.1.2 72082 2fdrA 229 7.17e+01 1fmb 104 7.19e+01 1fmb b.50.1.1 26777 1yge 839 7.23e+01 1yge a.119.1.1,b.12.1.1 19234,23634 1a8y 367 7.25e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1vq0A 302 7.28e+01 1ctt 294 7.32e+01 1ctt c.97.1.1,c.97.1.1 36022,36023 1kafA 108 7.35e+01 d.199.1.1 68372 1w2wB 191 7.41e+01 1chmA 401 7.53e+01 1chmA c.55.2.1,d.127.1.1 33545,41142 1sviA 195 7.54e+01 c.37.1.8 106048 1bxoA 323 7.62e+01 2er7E b.50.1.2 26805 1h8eA 510 7.73e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 2c1iA 431 7.75e+01 2a7mA 250 7.77e+01 1r5mA 425 7.79e+01 1r6lA 239 7.80e+01 d.14.1.4,d.101.1.1 97153,97154 1z2aA 168 7.86e+01 1fwxA 595 7.86e+01 b.6.1.4,b.69.3.1 60069,60070 1vi2A 300 7.94e+01 c.2.1.7,c.58.1.5 100726,100727 1t9hA 307 8.02e+01 1mp9A 198 8.04e+01 d.129.1.1,d.129.1.1 91385,91386 1ejfA 125 8.08e+01 1ejfA b.15.1.2 23683 1hm9A 468 8.24e+01 b.81.1.4,c.68.1.5 65866,65867 1uxtA 501 8.26e+01 c.82.1.1 108125 2b0vA 153 8.42e+01 1sheA 103 8.53e+01 d.274.1.1 105551 1aquA 297 8.63e+01 1aquA c.37.1.5 31942 1v30A 124 8.65e+01 2bm5A 186 8.68e+01 1uu1A 335 8.69e+01 c.67.1.1 99993 2fsjA 346 8.70e+01 1o6dA 163 8.79e+01 c.116.1.3 92567 1omoA 322 8.79e+01 c.2.1.13 104017 1dleA 298 8.80e+01 1dleA b.47.1.2 26312 1tuoA 464 8.80e+01 2btoA 473 8.81e+01 2a3nA 355 8.87e+01 1ez0A 510 8.92e+01 1eyyA c.82.1.1 35385 1dxy 333 8.93e+01 1dxy c.2.1.4,c.23.12.1 30094,31354 1qo7A 394 8.93e+01 1qo7A c.69.1.11 34697 2fl4A 149 8.98e+01 1tu5A 746 9.00e+01