# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1v7lA 163 1.19e-02 1jpaA 312 1.39e+00 d.144.1.7 67011 1mp8A 281 1.41e+00 d.144.1.7 91384 1vi4A 174 1.61e+00 c.8.7.1 100731 1aquA 297 3.08e+00 1aquA c.37.1.5 31942 1dkuA 317 3.25e+00 1dkuA c.61.1.2,c.61.1.2 34118,34119 1qauA 112 3.27e+00 1qauA b.36.1.1 24779 2d13A 227 3.56e+00 1yavA 159 3.98e+00 2evaA 307 4.49e+00 1k0hA 117 4.84e+00 b.106.1.2 71975 1hf2A 210 5.18e+00 1hf2A b.80.3.1,c.102.1.1 60992,60993 1ojjA 402 5.85e+00 b.29.1.10 93130 1dbiA 280 5.87e+00 1gci c.41.1.1 32543 1mx3A 347 6.15e+00 c.2.1.4,c.23.12.1 79638,79639 1wcdJ 441 6.15e+00 1vj0A 380 6.17e+00 b.35.1.2,c.2.1.1 100786,100787 2df7A 458 6.73e+00 2c30A 321 6.92e+00 1b7yB 785 7.03e+00 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16301,16302,25312,39311,40780,41456 2gp4A 628 7.19e+00 1pme 380 7.85e+00 1hcl d.144.1.7 41653 1c30B 382 7.89e+00 c.8.3.1,c.23.16.1 30736,31413 2gsfA 373 9.69e+00 1lzlA 323 1.02e+01 c.69.1.2 78306 1a9xB 379 1.03e+01 1c3oB c.8.3.1,c.23.16.1 30732,31409 2f57A 317 1.05e+01 1qf5A 431 1.07e+01 1adeA c.37.1.10 32212 1bg6 359 1.08e+01 1bg6 a.100.1.5,c.2.1.6 18810,30214 1ls1A 295 1.09e+01 a.24.13.1,c.37.1.10 78170,78171 2fvgA 340 1.09e+01 2di4A 238 1.10e+01 1qpcA 279 1.13e+01 1fgkA d.144.1.7 41685 1i12A 160 1.13e+01 1i21A d.108.1.1 61515 1zyiA 171 1.15e+01 2gjgA 248 1.15e+01 2beiA 170 1.24e+01 1kl1A 419 1.25e+01 c.67.1.4 72663 1q6zA 528 1.27e+01 1jftA 340 1.28e+01 a.35.1.5,c.93.1.1 66652,66653 1yjsA 419 1.29e+01 2furA 209 1.32e+01 1vi2A 300 1.34e+01 c.2.1.7,c.58.1.5 100726,100727 1p42A 270 1.34e+01 d.14.1.7,d.14.1.7 87754,87755 1nbwA 607 1.35e+01 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 1xffA 240 1.37e+01 d.153.1.1 109580 3cox 507 1.42e+01 1b8sA c.3.1.2,d.16.1.1 30332,37863 1z4hA 66 1.55e+01 1ln1A 214 1.72e+01 d.129.3.2 74038 1v4xA 144 1.73e+01 a.1.1.2 108363 1e0tA 470 1.75e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 1iioA 84 1.79e+01 a.39.4.1 66150 1inlA 296 1.80e+01 c.66.1.17 66220 1ru3A 732 1.84e+01 e.26.1.3 97835 1in4A 334 1.92e+01 1hqcA a.4.5.11,c.37.1.20 62597,62598 1ufoA 238 1.93e+01 c.69.1.27 99344 1x8vA 455 1.96e+01 1xrtA 467 2.00e+01 3ullA 132 2.01e+01 3ullA b.40.4.3 25282 1zzoA 136 2.12e+01 1pmnA 364 2.17e+01 d.144.1.7 94907 2gupA 292 2.18e+01 2c46A 241 2.32e+01 2d0oA 610 2.40e+01 1zvyA 136 2.40e+01 1g7sA 594 2.47e+01 1g7rA b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8 25712,25713,31032,32147 1qvcA 145 2.53e+01 3ullA b.40.4.3 25284 1uu1A 335 2.53e+01 c.67.1.1 99993 2bu3A 254 2.55e+01 1jb0A 755 2.60e+01 1jb0A f.29.1.1 62820 1rxyA 253 2.61e+01 c.56.2.1 98065 1fgkA 310 2.64e+01 1fgkA d.144.1.7 41693 1uirA 314 2.66e+01 c.66.1.17 99429 2g76A 335 2.74e+01 1ep3B 262 2.79e+01 1ep2B b.43.4.2,c.25.1.3 25664,31554 1ek6A 348 2.79e+01 1xel c.2.1.2 29800 2b9hA 353 2.85e+01 1dbqA 289 2.86e+01 1qpzA c.93.1.1 35666 1mh1 186 2.87e+01 1eesA c.37.1.8 32002 1w27A 714 2.91e+01 1dleA 298 2.93e+01 1dleA b.47.1.2 26312 1bkb 136 2.95e+01 1bkb b.34.5.2,b.40.4.5 24609,25341 1szhA 161 2.96e+01 a.226.1.1 106157 2gfsA 372 3.00e+01 1qv1A 195 3.06e+01 a.39.1.5 96347 1g3qA 237 3.23e+01 1hyqA c.37.1.10 60237 1f0lA 535 3.32e+01 1ddt b.2.1.1,d.166.1.1,f.1.2.1 22377,42239,43382 1oywA 523 3.35e+01 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1lr0A 129 3.40e+01 d.212.1.1 74213 1jpzA 473 3.52e+01 a.104.1.1 67069 1jyeA 349 3.54e+01 c.93.1.1 67455 1whi 122 3.66e+01 1whi b.39.1.1 24810 1kfcA 268 3.84e+01 c.1.2.4 77371 2aa1A 144 3.84e+01 1gheA 177 3.87e+01 d.108.1.1 76222 1w1oA 534 3.88e+01 d.58.32.4,d.145.1.1 109071,109072 1ymiA 334 3.88e+01 1euhA 475 3.92e+01 1euhA c.82.1.1 35369 1r6xA 395 3.98e+01 b.122.1.3,c.26.1.5 97167,97168 1dl2A 511 4.02e+01 1dl2A a.102.2.1 18844 2alaA 391 4.06e+01 1k32A 1045 4.12e+01 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1nuyA 337 4.18e+01 e.7.1.1 86213 2gpjA 252 4.19e+01 1h0hA 977 4.27e+01 b.52.2.2,c.81.1.1 76435,76436 1xd3A 230 4.29e+01 1zemA 262 4.29e+01 2vhbA 146 4.35e+01 2vhbA a.1.1.2 15629 1iukA 140 4.37e+01 c.2.1.8 83712 1rfeA 162 4.39e+01 1m70A 190 4.40e+01 a.3.1.4,a.3.1.4 91200,91201 1u6rA 380 4.49e+01 1uf2A 1019 4.57e+01 e.28.1.2 99289 1h2kA 349 4.59e+01 b.82.2.6 76572 1r64A 481 4.66e+01 b.18.1.20,c.41.1.1 97140,97141 1vj1A 363 4.66e+01 b.35.1.2,c.2.1.1 100794,100795 1j8mF 297 4.67e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1oaoC 729 4.68e+01 e.26.1.3 86746 1vqrA 297 4.69e+01 2bsxA 253 4.72e+01 2f9hA 129 4.75e+01 1iqzA 81 4.77e+01 d.58.1.4 66281 1iv8A 720 4.78e+01 b.71.1.1,c.1.8.1 76842,76843 1wyuB 474 4.83e+01 1ty9A 222 4.83e+01 1yqzA 438 4.91e+01 2fepA 289 4.96e+01 1vziA 126 5.01e+01 b.1.13.1,g.41.5.2 108967,108968 2anxA 146 5.02e+01 1gz8A 299 5.05e+01 d.144.1.7 83405 2fsjA 346 5.09e+01 2aa4A 289 5.13e+01 2fefA 294 5.15e+01 1p4oA 322 5.22e+01 d.144.1.7 87775 1pvdA 537 5.30e+01 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 2a4dA 160 5.32e+01 1wraA 308 5.38e+01 1jztA 246 5.40e+01 c.104.1.1 63319 1ytaA 180 5.44e+01 1iz6A 138 5.50e+01 b.34.5.2,b.40.4.5 76976,76977 1u2pA 163 5.64e+01 1ddjA 247 5.68e+01 5ptp b.47.1.2 26362 1qh4A 380 5.82e+01 1qh4A a.83.1.1,d.128.1.2 18462,41197 1bxoA 323 5.90e+01 2er7E b.50.1.2 26805 1k8kB 394 5.98e+01 c.55.1.1 68307 1s12A 94 6.00e+01 1hxvA 113 6.18e+01 d.26.1.1 71089 1qopA 268 6.30e+01 2tysA c.1.2.4 28570 1k6kA 143 6.30e+01 a.174.1.1 77274 1hqkA 154 6.35e+01 c.16.1.1 65902 1ooeA 236 6.38e+01 c.2.1.2 87196 1q5xA 161 6.42e+01 c.8.7.1 95947 1n8yC 608 6.42e+01 c.10.2.5,c.10.2.5,g.3.9.1,g.3.9.1 80314,80315,80316,80317 2b0tA 738 6.46e+01 1u59A 287 6.49e+01 d.144.1.7 107681 1uebA 184 6.60e+01 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784 1qo7A 394 6.64e+01 1qo7A c.69.1.11 34697 1zjkA 403 6.65e+01 1in6A 334 6.69e+01 1hqcA a.4.5.11,c.37.1.20 62601,62602 1w6sA 599 6.75e+01 1agqA 135 6.76e+01 1agqA g.17.1.2 44789 1mrzA 293 6.81e+01 b.43.5.1,c.26.1.3 91452,91453 1wjvA 79 6.84e+01 1s28A 132 6.88e+01 d.198.1.1 105223 1uu3A 310 6.88e+01 d.144.1.7 99999 1mkaA 171 7.06e+01 1mkaA d.38.1.2 38543 1opjA 293 7.12e+01 d.144.1.7 87230 2fu4A 83 7.15e+01 1l7mA 211 7.16e+01 c.108.1.4 73664 2eulA 156 7.16e+01 1xcbA 211 7.20e+01 a.4.5.38,c.2.1.12 109552,109553 1xdwA 331 7.20e+01 2fi9A 128 7.23e+01 1mjfA 281 7.26e+01 c.66.1.17 79198 1yhvA 297 7.29e+01 2bukA 196 7.31e+01 2btoA 473 7.39e+01 1o54A 277 7.40e+01 c.66.1.13 92482 1y89A 238 7.53e+01 2bdwA 362 7.75e+01 1rifA 282 7.99e+01 c.37.1.23 97507 1lkfA 299 8.10e+01 1pvl f.6.1.1 43821 1zm8A 259 8.12e+01 2bokA 241 8.25e+01 1fc6A 388 8.31e+01 1fc6A b.36.1.3,c.14.1.2 64738,64739 2a1iA 146 8.37e+01 2g0dA 409 8.39e+01 1u9cA 224 8.40e+01 1b6g 310 8.40e+01 1b6g c.69.1.8 34661 1tksA 204 8.41e+01 d.115.1.2 107114 1q67A 231 8.56e+01 b.55.1.7 95960 1nkqA 259 8.56e+01 d.177.1.1 103862 1twiA 434 8.57e+01 b.49.2.3,c.1.6.1 107399,107400 1iow 306 8.61e+01 1iow c.30.1.2,d.142.1.1 31713,41481 1tig 94 8.70e+01 1tig d.68.1.1 39566 1mspA 126 8.71e+01 1mspA b.1.11.2 22333 1jk4A 89 8.81e+01 b.9.1.1 77130 1cliA 345 8.85e+01 1cliA d.79.4.1,d.139.1.1 39816,41459 1t9hA 307 8.86e+01 1q0xH 221 8.93e+01 b.1.1.1,b.1.1.2 95517,95518 1n4wA 504 8.94e+01 c.3.1.2,d.16.1.1 91676,91677 1nxuA 333 8.94e+01 c.122.1.1 86389 1lh0A 213 8.96e+01 c.61.1.1 73896 1t0hB 224 8.98e+01 c.37.1.1 106208 1qstA 160 8.98e+01 1yghA d.108.1.1 40804