# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1v7lA 163 7.56e-02 1qmeA 702 9.63e-01 1pmd d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 1hf2A 210 2.41e+00 1hf2A b.80.3.1,c.102.1.1 60992,60993 1rqpA 299 2.98e+00 b.141.1.1,c.132.1.1 97754,97755 1yavA 159 3.69e+00 1nbwA 607 3.81e+00 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 1vbkA 307 4.48e+00 1wraA 308 5.15e+00 1y0yA 353 5.31e+00 1rliA 184 5.93e+00 c.23.5.6 97647 2ganA 190 6.92e+00 1zc1A 208 7.65e+00 1q0rA 298 7.90e+00 c.69.1.28 95508 2bsxA 253 8.28e+00 1j8mF 297 8.76e+00 1ng1 a.24.13.1,c.37.1.10 62742,62743 2bibA 547 9.08e+00 1fc6A 388 9.57e+00 1fc6A b.36.1.3,c.14.1.2 64738,64739 1d2oA 187 9.64e+00 1d2oA b.3.5.1,b.3.5.1 22625,22626 1rxyA 253 9.94e+00 c.56.2.1 98065 2gs5A 198 1.02e+01 2c46A 241 1.02e+01 2evaA 307 1.06e+01 1mx3A 347 1.06e+01 c.2.1.4,c.23.12.1 79638,79639 2g76A 335 1.07e+01 1gheA 177 1.15e+01 d.108.1.1 76222 1z85A 234 1.24e+01 2d13A 227 1.26e+01 1h16A 759 1.27e+01 c.7.1.1 76462 2gjgA 248 1.27e+01 1uxtA 501 1.30e+01 c.82.1.1 108125 1iz5A 249 1.42e+01 d.131.1.2,d.131.1.2 83834,83835 1o88A 353 1.45e+01 b.80.1.1 81178 2aa4A 289 1.47e+01 1bg6 359 1.49e+01 1bg6 a.100.1.5,c.2.1.6 18810,30214 2fb1A 226 1.54e+01 1r6xA 395 1.75e+01 b.122.1.3,c.26.1.5 97167,97168 1jztA 246 1.79e+01 c.104.1.1 63319 1w15A 153 1.85e+01 b.7.1.2 109041 2coeA 120 2.10e+01 1ek9A 428 2.11e+01 1ek9A f.5.1.1 43809 1ln1A 214 2.17e+01 d.129.3.2 74038 1vddA 228 2.25e+01 e.49.1.1 108519 1je0A 236 2.25e+01 c.56.2.1 66581 1qlmA 316 2.50e+01 1qlmA d.147.1.1 41765 1yovA 537 2.55e+01 1z1dA 103 2.58e+01 1qqp2 218 2.60e+01 1qqp2 2b0vA 153 2.62e+01 1p42A 270 2.67e+01 d.14.1.7,d.14.1.7 87754,87755 1mrzA 293 2.73e+01 b.43.5.1,c.26.1.3 91452,91453 1utcA 363 2.76e+01 a.118.1.4,b.69.6.1 99914,99915 2beiA 170 2.78e+01 1u3eM 174 2.99e+01 d.4.1.3,d.285.1.1 107640,107641 1vjpA 394 3.01e+01 c.2.1.3,d.81.1.3 100828,100829 2fe7A 166 3.06e+01 2gp4A 628 3.09e+01 1qauA 112 3.10e+01 1qauA b.36.1.1 24779 2gujA 155 3.21e+01 1x6vA 630 3.40e+01 1i12A 160 3.51e+01 1i21A d.108.1.1 61515 1q67A 231 3.66e+01 b.55.1.7 95960 1l3kA 196 3.79e+01 d.58.7.1,d.58.7.1 73539,73540 1n8yC 608 3.82e+01 c.10.2.5,c.10.2.5,g.3.9.1,g.3.9.1 80314,80315,80316,80317 1woqA 267 3.93e+01 c.55.1.10,c.55.1.10 109462,109463 1omoA 322 3.95e+01 c.2.1.13 104017 2alaA 391 4.01e+01 1k3bB 164 4.04e+01 d.3.1.1 72015 1tr9A 341 4.08e+01 1vi4A 174 4.09e+01 c.8.7.1 100731 1vhsA 175 4.13e+01 d.108.1.1 100698 2ex4A 241 4.14e+01 1yloA 348 4.17e+01 1nhs 447 4.18e+01 1nhp c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1y0bA 197 4.28e+01 1xf1A 926 4.31e+01 2agyA 361 4.32e+01 2gwgA 350 4.36e+01 2bu3A 254 4.47e+01 1cs1A 386 4.49e+01 1ibjA c.67.1.3 34399 1f0lA 535 4.49e+01 1ddt b.2.1.1,d.166.1.1,f.1.2.1 22377,42239,43382 1g3qA 237 4.54e+01 1hyqA c.37.1.10 60237 1dleA 298 4.60e+01 1dleA b.47.1.2 26312 2czrA 226 4.64e+01 1q40B 219 4.66e+01 d.17.4.2 95771 1ahl 49 4.70e+01 1ahl g.9.1.1 44601 1m0wA 491 4.73e+01 c.30.1.4,d.142.1.6 78363,78364 1fmb 104 4.75e+01 1fmb b.50.1.1 26777 1neu 124 4.87e+01 1neu b.1.1.1 19704 1fjhA 257 4.94e+01 1fjhB c.2.1.2 29870 1qgdA 662 4.99e+01 c.36.1.6,c.36.1.10,c.48.1.1 88367,88368,88369 1fjrA 195 5.01e+01 1fjrA b.102.1.1 59855 1vctA 205 5.02e+01 1so7A 382 5.07e+01 1vi2A 300 5.13e+01 c.2.1.7,c.58.1.5 100726,100727 1odkA 235 5.16e+01 c.56.2.1 86863 1a9xB 379 5.16e+01 1c3oB c.8.3.1,c.23.16.1 30732,31409 1zemA 262 5.18e+01 2f1rA 171 5.27e+01 1cjcA 460 5.29e+01 1cjcA c.3.1.1,c.4.1.1 30319,30604 1qo7A 394 5.30e+01 1qo7A c.69.1.11 34697 1b7yB 785 5.34e+01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16301,16302,25312,39311,40780,41456 1c3pA 375 5.35e+01 1c3pA c.42.1.2 32606 1vziA 126 5.38e+01 b.1.13.1,g.41.5.2 108967,108968 1fx2A 235 5.42e+01 1fx2A d.58.29.1 39430 1jbkA 195 5.42e+01 c.37.1.20 71631 1geeA 261 5.43e+01 c.2.1.2 90509 1uliB 187 5.57e+01 d.17.4.4 107923 1g8lA 411 5.66e+01 1g8lA b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 2blnA 305 5.74e+01 1ja9A 274 5.75e+01 c.2.1.2 62817 1fs7A 485 5.77e+01 1qdbA a.138.1.3 19691 1g57A 217 5.83e+01 1g57A d.115.1.2 60253 1fsgA 233 5.83e+01 1qk3A c.61.1.1 34029 2furA 209 5.87e+01 1nepA 130 5.89e+01 b.1.18.7 80440 1xvaA 292 5.92e+01 1xvaA c.66.1.5 34183 1c1yB 77 6.07e+01 1c1yB d.15.1.5 37618 2gfaA 119 6.17e+01 1h8eH 146 6.18e+01 1e79H b.93.1.1 60757 1yh1A 359 6.22e+01 2gupA 292 6.32e+01 1n0lA 224 6.34e+01 b.1.11.1,b.7.2.1 79744,79745 1t9hA 307 6.43e+01 1bx1A 314 6.43e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1qs1A 462 6.50e+01 1qs1A d.166.1.1,d.166.1.1 42260,42261 1j1tA 233 6.61e+01 b.29.1.18 90771 1vc3B 97 6.69e+01 1qhtA 775 6.85e+01 1tgoA c.55.3.5,e.8.1.1 33722,43011 1t4wA 196 6.93e+01 b.2.5.2 106427 1euhA 475 6.94e+01 1euhA c.82.1.1 35369 2g8lA 299 6.95e+01 1wkrA 340 7.01e+01 b.50.1.2 109395 2apr 325 7.08e+01 2er7E b.50.1.2 26819 2bukA 196 7.28e+01 2acvA 463 7.32e+01 1vqoE 178 7.43e+01 1in4A 334 7.49e+01 1hqcA a.4.5.11,c.37.1.20 62597,62598 1ne9A 335 7.51e+01 d.108.1.4,d.108.1.4 91839,91840 1agqA 135 7.54e+01 1agqA g.17.1.2 44789 1ogiA 303 7.55e+01 b.43.4.2,c.25.1.1 92914,92915 1x3lA 440 7.55e+01 2atrA 138 7.69e+01 2gefA 217 7.71e+01 8rucI 123 7.71e+01 1rboC d.73.1.1 39629 2bmwA 304 7.75e+01 1hztA 190 7.75e+01 1i9aA d.113.1.2 61459 1b0uA 262 7.87e+01 1b0uA c.37.1.12 32370 1r6lA 239 7.87e+01 d.14.1.4,d.101.1.1 97153,97154 1tyv 542 7.90e+01 1tyv b.80.1.6 28038 1imjA 210 7.95e+01 c.69.1.23 71246 1i0lA 221 7.97e+01 c.61.1.1 71096 1qd1A 325 7.97e+01 1qd1A d.58.34.1,d.58.34.1 39493,39494 1whi 122 7.99e+01 1whi b.39.1.1 24810 1rl6A 177 8.14e+01 1rl6A d.141.1.1,d.141.1.1 41473,41474 1r7lA 110 8.14e+01 d.277.1.1 104837 1x9pA 523 8.20e+01 1c30B 382 8.24e+01 c.8.3.1,c.23.16.1 30736,31413 2ffsA 157 8.30e+01 1xkwA 665 8.34e+01 1xebA 150 8.34e+01 1h8eA 510 8.35e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1ijbA 202 8.42e+01 c.62.1.1 71229 1dxy 333 8.62e+01 1dxy c.2.1.4,c.23.12.1 30094,31354 1q45A 391 8.67e+01 c.1.4.1 95780 1mai 131 8.71e+01 1mai b.55.1.1 26951 1k7jA 206 8.71e+01 d.115.1.1 72103 1o04A 500 8.77e+01 c.82.1.1 86508 1mw9X 592 8.95e+01 e.10.1.1 91480 1q60A 99 8.98e+01 1e19A 314 8.98e+01 1b7bA c.73.1.1 34967 1zm8A 259 8.98e+01