# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1v7lA 163 1.97e-01 2ganA 190 3.88e-01 1rliA 184 8.79e-01 c.23.5.6 97647 1vbkA 307 1.07e+00 1vddA 228 1.23e+00 e.49.1.1 108519 1bg6 359 1.66e+00 1bg6 a.100.1.5,c.2.1.6 18810,30214 2gjgA 248 1.93e+00 1hf2A 210 2.02e+00 1hf2A b.80.3.1,c.102.1.1 60992,60993 2beiA 170 2.03e+00 1p42A 270 2.52e+00 d.14.1.7,d.14.1.7 87754,87755 2gfaA 119 2.58e+00 1r6xA 395 2.81e+00 b.122.1.3,c.26.1.5 97167,97168 1qmeA 702 2.92e+00 1pmd d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 2d13A 227 2.98e+00 2bsxA 253 3.01e+00 1d2oA 187 3.45e+00 1d2oA b.3.5.1,b.3.5.1 22625,22626 1vi4A 174 3.51e+00 c.8.7.1 100731 2fe7A 166 4.06e+00 1mx3A 347 4.17e+00 c.2.1.4,c.23.12.1 79638,79639 2g76A 335 4.85e+00 1h16A 759 5.06e+00 c.7.1.1 76462 1rxyA 253 5.43e+00 c.56.2.1 98065 1gheA 177 5.50e+00 d.108.1.1 76222 1fsgA 233 5.70e+00 1qk3A c.61.1.1 34029 1iz5A 249 5.97e+00 d.131.1.2,d.131.1.2 83834,83835 1geeA 261 6.32e+00 c.2.1.2 90509 1odkA 235 6.55e+00 c.56.2.1 86863 1c1yB 77 6.76e+00 1c1yB d.15.1.5 37618 1y0bA 197 6.88e+00 1xf1A 926 7.01e+00 1g8lA 411 7.29e+00 1g8lA b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1kafA 108 7.44e+00 d.199.1.1 68372 1xebA 150 7.84e+00 1qlmA 316 7.93e+00 1qlmA d.147.1.1 41765 2gp4A 628 7.99e+00 1uwzA 136 8.00e+00 c.97.1.1 108081 1g0oA 283 8.52e+00 1ybvA c.2.1.2 60181 2aa4A 289 8.53e+00 1g3qA 237 8.73e+00 1hyqA c.37.1.10 60237 1rqpA 299 9.08e+00 b.141.1.1,c.132.1.1 97754,97755 1wn5A 130 9.60e+00 1vhsA 175 9.67e+00 d.108.1.1 100698 1fc6A 388 9.73e+00 1fc6A b.36.1.3,c.14.1.2 64738,64739 1xdnA 277 1.05e+01 1ln1A 214 1.08e+01 d.129.3.2 74038 1gs5A 258 1.08e+01 c.73.1.2 70395 1y0yA 353 1.08e+01 1je0A 236 1.09e+01 c.56.2.1 66581 2f06A 144 1.13e+01 1x6vA 630 1.15e+01 1g57A 217 1.18e+01 1g57A d.115.1.2 60253 1fjhA 257 1.18e+01 1fjhB c.2.1.2 29870 1uxtA 501 1.24e+01 c.82.1.1 108125 1cliA 345 1.24e+01 1cliA d.79.4.1,d.139.1.1 39816,41459 1e19A 314 1.25e+01 1b7bA c.73.1.1 34967 1k78A 149 1.26e+01 a.4.1.5,a.4.1.5 68255,68256 2apr 325 1.31e+01 2er7E b.50.1.2 26819 2evaA 307 1.37e+01 1rhs 296 1.47e+01 1rhs c.46.1.2,c.46.1.2 32703,32704 1ja9A 274 1.48e+01 c.2.1.2 62817 1w99A 558 1.49e+01 1xkwA 665 1.51e+01 1vc3B 97 1.53e+01 2cq2A 114 1.56e+01 1cjcA 460 1.58e+01 1cjcA c.3.1.1,c.4.1.1 30319,30604 1h8eA 510 1.59e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1kl1A 419 1.61e+01 c.67.1.4 72663 1yjsA 419 1.64e+01 2atrA 138 1.65e+01 2c46A 241 1.69e+01 1nbaA 264 1.72e+01 1nbaA c.33.1.3 31753 1o88A 353 1.72e+01 b.80.1.1 81178 1nnfA 309 1.76e+01 c.94.1.1 85903 2f1rA 171 1.77e+01 1yavA 159 1.84e+01 1vi2A 300 1.88e+01 c.2.1.7,c.58.1.5 100726,100727 1h8eH 146 1.89e+01 1e79H b.93.1.1 60757 2f1fA 164 1.90e+01 1sc6A 404 1.94e+01 1am2 199 1.95e+01 1am2 b.86.1.2 28381 2bibA 547 1.96e+01 1vicA 262 2.00e+01 c.68.1.13 100756 2gupA 292 2.00e+01 1whzA 70 2.01e+01 1nbwA 607 2.02e+01 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 1wwkA 307 2.03e+01 1vziA 126 2.03e+01 b.1.13.1,g.41.5.2 108967,108968 1zymA 258 2.08e+01 1zymA a.60.10.1,c.8.1.2 18110,30705 1wwzA 159 2.09e+01 2a33A 215 2.11e+01 2cveA 191 2.13e+01 1ko3A 230 2.13e+01 d.157.1.1 90974 1q33A 292 2.20e+01 d.113.1.1 95657 1nr0A 611 2.27e+01 b.69.4.1,b.69.4.1 86078,86079 1fwxA 595 2.32e+01 b.6.1.4,b.69.3.1 60069,60070 2c1iA 431 2.43e+01 1zemA 262 2.44e+01 1jeoA 180 2.45e+01 c.80.1.3 66611 2gasA 307 2.46e+01 1ek6A 348 2.49e+01 1xel c.2.1.2 29800 2b5gA 171 2.52e+01 1jnrB 150 2.56e+01 d.58.1.5 66969 1ixcA 294 2.56e+01 a.4.5.37,c.94.1.1 83764,83765 1cs1A 386 2.57e+01 1ibjA c.67.1.3 34399 2bneA 241 2.58e+01 1bf6A 291 2.62e+01 1pscA c.1.9.3 29065 1i12A 160 2.72e+01 1i21A d.108.1.1 61515 1zsoA 164 2.73e+01 1uheA 97 2.80e+01 1fs7A 485 2.83e+01 1qdbA a.138.1.3 19691 1w66A 232 2.86e+01 1dbwA 126 2.88e+01 1dbwA c.23.1.1 31095 1zc1A 208 2.91e+01 2bcqA 335 2.91e+01 2gwhA 298 2.92e+01 1k7jA 206 2.92e+01 d.115.1.1 72103 1t9hA 307 2.94e+01 1dkuA 317 2.97e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1wraA 308 3.03e+01 1wkrA 340 3.03e+01 b.50.1.2 109395 1s3cA 141 3.04e+01 2g50A 530 3.15e+01 2f8aA 208 3.16e+01 1jcfA 344 3.23e+01 c.55.1.1,c.55.1.1 62878,62879 1q67A 231 3.25e+01 b.55.1.7 95960 1r6lA 239 3.26e+01 d.14.1.4,d.101.1.1 97153,97154 1m0wA 491 3.34e+01 c.30.1.4,d.142.1.6 78363,78364 1vjpA 394 3.48e+01 c.2.1.3,d.81.1.3 100828,100829 1xbiA 120 3.50e+01 1yovA 537 3.60e+01 1ep3B 262 3.61e+01 1ep2B b.43.4.2,c.25.1.3 25664,31554 1ez0A 510 3.65e+01 1eyyA c.82.1.1 35385 1oaqH 121 3.68e+01 b.1.1.1 92707 1qqp2 218 3.75e+01 1qqp2 1al3 324 3.81e+01 1al3 c.94.1.1 35835 2bukA 196 3.82e+01 1jkeA 145 3.84e+01 c.110.1.1 66791 1s2wA 295 3.86e+01 c.1.12.7 98407 2a5jA 191 3.86e+01 1xr4A 509 3.94e+01 1q60A 99 3.97e+01 1t0iA 191 3.98e+01 c.23.5.4 106209 1f0lA 535 4.04e+01 1ddt b.2.1.1,d.166.1.1,f.1.2.1 22377,42239,43382 1neu 124 4.05e+01 1neu b.1.1.1 19704 1wwrA 171 4.09e+01 1ne9A 335 4.11e+01 d.108.1.4,d.108.1.4 91839,91840 2f5uA 447 4.12e+01 1ahl 49 4.13e+01 1ahl g.9.1.1 44601 2gefA 217 4.16e+01 1j8mF 297 4.21e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1w2wB 191 4.27e+01 2c2xA 281 4.34e+01 1x65A 89 4.36e+01 1zbqA 327 4.37e+01 1amf 233 4.40e+01 1wod c.94.1.1 35833 1z02A 446 4.41e+01 1z1dA 103 4.42e+01 1qjcA 158 4.43e+01 1b6tA c.26.1.3 63328 1n0lA 224 4.46e+01 b.1.11.1,b.7.2.1 79744,79745 1y7rA 133 4.50e+01 1owfA 99 4.51e+01 a.55.1.1 87487 1v37A 177 4.53e+01 2ffsA 157 4.57e+01 1vqoE 178 4.61e+01 2gujA 155 4.62e+01 1whi 122 4.66e+01 1whi b.39.1.1 24810 3cox 507 4.68e+01 1b8sA c.3.1.2,d.16.1.1 30332,37863 1zavA 180 4.68e+01 1b34B 118 4.69e+01 1b34B b.38.1.1 24797 1xtqA 177 4.71e+01 1lcyA 325 4.72e+01 b.36.1.4,b.47.1.1 73834,73835 2ccjA 205 4.82e+01 2a6hC 1119 4.84e+01 1auoA 218 4.84e+01 1auoA c.69.1.14 34716 1q0rA 298 4.85e+01 c.69.1.28 95508 1yge 839 4.91e+01 1yge a.119.1.1,b.12.1.1 19234,23634 1qgdA 662 4.92e+01 c.36.1.6,c.36.1.10,c.48.1.1 88367,88368,88369 1y0nA 78 4.95e+01 2fvgA 340 4.99e+01 1b7yB 785 5.10e+01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16301,16302,25312,39311,40780,41456 1yh1A 359 5.14e+01 1m4jA 142 5.16e+01 d.109.1.2 78602 1od6A 160 5.19e+01 c.26.1.3 86836 1in4A 334 5.23e+01 1hqcA a.4.5.11,c.37.1.20 62597,62598 1a8y 367 5.23e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1vctA 205 5.24e+01 2aamA 309 5.27e+01 2coeA 120 5.28e+01 1mspA 126 5.29e+01 1mspA b.1.11.2 22333 1hm9A 468 5.30e+01 b.81.1.4,c.68.1.5 65866,65867 1wi6A 88 5.30e+01 1ijqA 316 5.32e+01 1ijqA b.68.5.1,g.3.11.1 62506,62507 1ignA 246 5.34e+01 1ignA a.4.1.6,a.4.1.6 16048,16049 1mvfD 82 5.34e+01 b.129.1.1 85143 1ufoA 238 5.35e+01 c.69.1.27 99344 1iro 54 5.37e+01 1rb9 g.41.5.1 45223 1jbkA 195 5.40e+01 c.37.1.20 71631 2fp7B 172 5.40e+01 1twyA 290 5.43e+01 1uz5A 402 5.44e+01 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1k6dA 220 5.45e+01 c.124.1.2 72082 1ehiA 377 5.47e+01 1iow c.30.1.2,d.142.1.1 31716,41484 1s1dA 331 5.48e+01 b.67.3.1 98344 1sdsA 117 5.49e+01 d.79.3.1 105439 1bd3A 243 5.57e+01 1bd3A c.61.1.1 34098 1syxB 86 5.59e+01 2a6qA 86 5.61e+01 1ebfA 358 5.62e+01 1ebuA c.2.1.3,d.81.1.2 30033,39948 1vggA 161 5.66e+01 1cz4A 185 5.69e+01 1cz4A b.52.2.3,d.31.1.1 26934,38468 1k3bB 164 5.70e+01 d.3.1.1 72015 1c3cA 429 5.81e+01 1c3cA a.127.1.1 19425 1y4tA 322 5.82e+01 1dxeA 256 5.84e+01 1dxeA c.1.12.5 29310 1sqrA 95 5.88e+01 1tu5A 746 5.89e+01 1r6vA 671 5.90e+01 1fo8A 343 5.93e+01 1foaA c.68.1.10 59927 1k0hA 117 6.03e+01 b.106.1.2 71975 1bx1A 314 6.04e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1b0uA 262 6.07e+01 1b0uA c.37.1.12 32370 1r0vA 305 6.08e+01 c.52.2.1,c.52.2.1,d.75.1.1 96742,96743,96744 2ck3A 510 6.08e+01 1vl2A 421 6.15e+01 c.26.2.1,d.210.1.1 108708,108709 1l3kA 196 6.22e+01 d.58.7.1,d.58.7.1 73539,73540 1bxoA 323 6.24e+01 2er7E b.50.1.2 26805 1omoA 322 6.25e+01 c.2.1.13 104017 1s29A 92 6.28e+01 a.4.5.46 98373 2blnA 305 6.32e+01 1j71A 334 6.33e+01 1eagA b.50.1.2 62669 1xdwA 331 6.33e+01 1okgA 373 6.36e+01 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1wlsA 328 6.36e+01 1j05B 121 6.41e+01 b.1.1.1 90736 1k32A 1045 6.42e+01 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2furA 209 6.45e+01 1sviA 195 6.49e+01 c.37.1.8 106048 1xcbA 211 6.54e+01 a.4.5.38,c.2.1.12 109552,109553 2g8lA 299 6.56e+01 1pmy 123 6.56e+01 1bqk b.6.1.1 22888 1kblA 873 6.56e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 2f2eA 146 6.63e+01 1uu1A 335 6.63e+01 c.67.1.1 99993 1k92A 455 6.65e+01 c.26.2.1,d.210.1.1 68325,68326 1t4wA 196 6.65e+01 b.2.5.2 106427 1y88A 199 6.68e+01 1xvaA 292 6.70e+01 1xvaA c.66.1.5 34183 1mw9X 592 6.71e+01 e.10.1.1 91480 1y81A 138 6.76e+01 1sgjA 284 6.80e+01 c.1.12.5 105535 1cydA 244 6.91e+01 1cydA c.2.1.2 29825 1n7hA 381 6.95e+01 c.2.1.2 80250 2b0vA 153 6.96e+01 2gaiA 633 6.99e+01 2fv7A 331 7.06e+01 1kicA 339 7.08e+01 c.70.1.1 72510 1s1fA 406 7.12e+01 1nhkL 144 7.14e+01 1npk d.58.6.1 39142 1ta3A 274 7.15e+01 c.1.8.5 106731 1yllA 200 7.16e+01 1woqA 267 7.16e+01 c.55.1.10,c.55.1.10 109462,109463 2a5yB 549 7.21e+01 1kqfA 1015 7.21e+01 b.52.2.2,c.81.1.1 72871,72872 1z85A 234 7.21e+01 1ejdA 419 7.42e+01 1uae d.68.2.2 39576 2gwgA 350 7.46e+01 1m65A 245 7.48e+01 c.6.3.1 84847 2bmwA 304 7.48e+01 2btoA 473 7.49e+01 1vf8A 377 7.53e+01 1ukuA 102 7.56e+01 d.58.5.2 99533 1lm8V 160 7.57e+01 b.3.3.1 74035 1qahA 136 7.58e+01 d.79.1.1 96338 2blfB 81 7.62e+01 1mkyA 439 7.81e+01 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 2c0zA 216 7.92e+01 1jyeA 349 7.93e+01 c.93.1.1 67455 1a4iA 301 7.93e+01 1a4iA c.2.1.7,c.58.1.2 30278,33926 1jb0A 755 7.94e+01 1jb0A f.29.1.1 62820 1st9A 143 7.96e+01 c.47.1.10 98987 1chmA 401 7.99e+01 1chmA c.55.2.1,d.127.1.1 33545,41142 1q0xH 221 8.02e+01 b.1.1.1,b.1.1.2 95517,95518 1zm8A 259 8.04e+01 1ro0A 216 8.11e+01 d.264.1.2 97664 1mxmA 254 8.11e+01 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 1ls1A 295 8.11e+01 a.24.13.1,c.37.1.10 78170,78171 1n3lA 372 8.12e+01 c.26.1.1 79966 2ex4A 241 8.13e+01 2a2kA 175 8.13e+01 1duvG 333 8.15e+01 1othA c.78.1.1,c.78.1.1 35228,35229 1e0cA 271 8.20e+01 1e0cA c.46.1.2,c.46.1.2 32717,32718 2bjbA 462 8.21e+01 1uf3A 228 8.31e+01 d.159.1.6 99317 1k3iA 656 8.36e+01 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 2f9sA 151 8.38e+01 1np7A 489 8.42e+01 a.99.1.1,c.28.1.1 80677,80678 1zbfA 142 8.44e+01 1f2vA 219 8.50e+01 1f2vA c.23.17.1 59627 2cw9A 194 8.51e+01 2fdrA 229 8.57e+01 1agqA 135 8.61e+01 1agqA g.17.1.2 44789 2ai4A 119 8.63e+01 1x9pA 523 8.67e+01 2bgcA 238 8.70e+01 1svy 114 8.70e+01 1svy d.109.1.1 40831 1tqnA 486 8.70e+01 a.104.1.1 107238 2f23A 156 8.76e+01 1qhtA 775 8.76e+01 1tgoA c.55.3.5,e.8.1.1 33722,43011 1a9xB 379 8.81e+01 1c3oB c.8.3.1,c.23.16.1 30732,31409 1ctt 294 8.81e+01 1ctt c.97.1.1,c.97.1.1 36022,36023 1vrbA 342 8.84e+01 2g6tA 306 8.87e+01 1w6sA 599 8.88e+01 1j2rA 199 8.91e+01 c.33.1.3 90788 1ogiA 303 8.91e+01 b.43.4.2,c.25.1.1 92914,92915 2bm5A 186 8.91e+01 1fnd 314 8.91e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1w15A 153 8.95e+01 b.7.1.2 109041 1dleA 298 8.97e+01 1dleA b.47.1.2 26312 1r0uA 148 8.99e+01 b.60.1.5 96741