# List of top-scoring protein chains for T0357.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1v7lA 163 4.05e-01 1p3rA 160 4.02e+00 b.55.1.2 94065 2g74A 183 6.33e+00 1x83A 189 6.40e+00 2etlA 228 6.90e+00 1i9aA 182 6.92e+00 1i9aA d.113.1.2 62082 1ppvA 183 6.94e+00 d.113.1.2 104282 1x84A 189 6.97e+00 1hztA 190 7.01e+00 1i9aA d.113.1.2 61459 1q54A 183 7.70e+00 d.113.1.2 95860 1hx3A 190 7.80e+00 1i9aA d.113.1.2 61351 1r67A 190 1.14e+01 d.113.1.2 97147 1iqzA 81 1.34e+01 d.58.1.4 66281 2aa4A 289 1.47e+01 1qdmA 478 1.49e+01 1smrA a.64.1.2,b.50.1.2 18141,26838 1dkuA 317 1.72e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1bk4A 337 1.83e+01 1frpA e.7.1.1 42938 1zunB 434 1.90e+01 1qmyA 167 2.29e+01 1qmyA d.3.1.2 37094 1sxjB 323 2.42e+01 a.80.1.1,c.37.1.20 106083,106084 1i9wA 390 2.44e+01 b.1.18.4,f.10.1.1 71163,71164 2alaA 391 2.44e+01 1giqA 413 2.46e+01 d.166.1.1,d.166.1.1 76224,76225 2bwjA 199 2.51e+01 1cjcA 460 2.52e+01 1cjcA c.3.1.1,c.4.1.1 30319,30604 1h32B 138 2.60e+01 a.3.1.1 76620 1qolA 173 2.65e+01 1qmyA d.3.1.2 37097 1nxuA 333 2.96e+01 c.122.1.1 86389 1s20A 340 2.97e+01 c.122.1.1 98356 1neu 124 3.08e+01 1neu b.1.1.1 19704 1qdlB 195 3.26e+01 1qdlB c.23.16.1 31437 1ijxA 127 3.41e+01 1ijxA a.141.1.1 62511 1uwgH 225 3.47e+01 b.1.1.1,b.1.1.2 100115,100116 1zvyA 136 3.48e+01 1v4xA 144 3.65e+01 a.1.1.2 108363 1tr9A 341 3.71e+01 2fieA 338 3.76e+01 1y65A 342 3.77e+01 2bukA 196 3.78e+01 2fhyA 374 3.79e+01 1yavA 159 3.97e+01 1e2xA 243 4.08e+01 1e2xA a.4.5.6,a.78.1.1 16113,18443 1ftaA 337 4.23e+01 1frpA e.7.1.1 42934 1egjH 220 4.28e+01 1igtB b.1.1.1,b.1.1.2 20501,21457 1yiqA 689 4.32e+01 2f1dA 207 4.37e+01 1vi4A 174 4.46e+01 c.8.7.1 100731 1fj9A 337 4.58e+01 1frpA e.7.1.1 42907 1nuyA 337 4.58e+01 e.7.1.1 86213 2f3bA 338 4.58e+01 1yyzA 337 4.63e+01 1xe4A 335 4.70e+01 1fsaA 337 4.89e+01 1frpA e.7.1.1 42903 1kz8A 337 4.89e+01 e.7.1.1 77633 1rdzA 337 4.93e+01 1frpA e.7.1.1 42882 1levA 337 4.99e+01 e.7.1.1 77911 1st3 269 5.07e+01 1gci c.41.1.1 32504 1ne9A 335 5.17e+01 d.108.1.4,d.108.1.4 91839,91840 1uywH 218 5.33e+01 5fbpA 335 5.59e+01 1frpA e.7.1.1 42873 1frpA 335 5.61e+01 1frpA e.7.1.1 42875 1sq1A 370 5.68e+01 d.258.1.1 98961 1xf8A 335 5.71e+01 1ugiA 84 5.76e+01 1ugiA d.17.5.1 38125 1ughI 82 5.81e+01 1ugiA d.17.5.1 38133 1udiI 83 5.84e+01 1ugiA d.17.5.1 38124 1to6A 371 5.86e+01 c.141.1.1 107170 1q5pA 269 6.04e+01 c.41.1.1 95903 1c9mA 269 6.06e+01 1gci c.41.1.1 32506 1d2gA 292 6.06e+01 1xvaA c.66.1.5 34187 1wviA 257 6.25e+01 2bhtA 303 6.65e+01 1xvaA 292 6.78e+01 1xvaA c.66.1.5 34183 1hw1A 239 6.82e+01 1e2xA a.4.5.6,a.78.1.1 16111,18441 2d7uA 339 7.10e+01 1zxoA 291 7.11e+01 2fsjA 346 7.34e+01 2ayiA 408 7.44e+01 1f1eA 154 7.46e+01 a.22.1.2 64927 1nbwA 607 7.48e+01 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 1l1qA 186 8.14e+01 c.61.1.1 77653 1nm1A 375 8.17e+01 c.55.1.1,c.55.1.1 80651,80652 1dvfD 120 8.18e+01 1mfa b.1.1.1 20107 1yqzA 438 8.30e+01 1xrgA 156 8.39e+01 1gp1A 198 8.47e+01 1gp1A c.47.1.10 33059 1kqfB 294 8.61e+01 d.58.1.5,f.23.22.1 75900,75901 2cd0A 111 8.64e+01 8fabA b.1.1.1 20561 1q0yH 221 8.77e+01 b.1.1.1,b.1.1.2 95521,95522 1cteA 254 8.78e+01 1theB d.3.1.1 37058 1theA 260 8.91e+01 1theB d.3.1.1 37056 1q1jL 215 8.98e+01 b.1.1.1,b.1.1.2 95585,95586