# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1v7lA 163 2.24e-02 1yqzA 438 1.16e+00 1mp8A 281 1.16e+00 d.144.1.7 91384 1tvoA 368 1.41e+00 1a8s 273 1.53e+00 1brt c.69.1.12 34710 1aquA 297 1.81e+00 1aquA c.37.1.5 31942 1pme 380 1.91e+00 1hcl d.144.1.7 41653 3erk 364 2.24e+00 1hcl d.144.1.7 41654 2gfsA 372 2.48e+00 1ywrA 360 2.71e+00 1zoiA 276 3.08e+00 1jpaA 312 3.10e+00 d.144.1.7 67011 1hf2A 210 3.26e+00 1hf2A b.80.3.1,c.102.1.1 60992,60993 1zzlA 351 3.42e+00 1r3cA 366 3.72e+00 d.144.1.7 96906 2c30A 321 3.83e+00 1z5vA 474 3.89e+00 1h1dA 221 3.97e+00 c.66.1.1 83452 1zz2A 360 4.30e+00 1vid 221 4.48e+00 1vid c.66.1.1 34178 1wbsA 360 4.79e+00 1pmnA 364 4.85e+00 d.144.1.7 94907 2b9hA 353 5.21e+00 1ywnA 316 5.69e+00 2gsfA 373 5.99e+00 1a8q 274 6.40e+00 1brt c.69.1.12 34702 2f57A 317 7.66e+00 1blxA 326 8.52e+00 1hcl d.144.1.7 41596 2a19B 284 8.66e+00 1j8mF 297 9.08e+00 1ng1 a.24.13.1,c.37.1.10 62742,62743 1m2xA 223 1.09e+01 d.157.1.1 84764 1fgkA 310 1.09e+01 1fgkA d.144.1.7 41693 1oywA 523 1.10e+01 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1rerA 391 1.14e+01 b.1.18.4,f.10.1.1 97327,97328 1i7qB 193 1.19e+01 1qdlB c.23.16.1 61902 1fvrA 327 1.23e+01 d.144.1.7 60047 1qpcA 279 1.23e+01 1fgkA d.144.1.7 41685 1m2rA 327 1.23e+01 d.144.1.7 84760 1k0hA 117 1.26e+01 b.106.1.2 71975 1a88A 275 1.35e+01 1brt c.69.1.12 34707 1dl2A 511 1.35e+01 1dl2A a.102.2.1 18844 1h0hA 977 1.37e+01 b.52.2.2,c.81.1.1 76435,76436 1qf5A 431 1.43e+01 1adeA c.37.1.10 32212 1ymiA 334 1.48e+01 1g3mA 294 1.48e+01 c.37.1.5 83268 1p4oA 322 1.50e+01 d.144.1.7 87775 1hcl 298 1.51e+01 1hcl d.144.1.7 41593 1om1A 332 1.57e+01 d.144.1.7 93347 1in4A 334 1.58e+01 1hqcA a.4.5.11,c.37.1.20 62597,62598 2bvaA 292 1.59e+01 1ir3A 306 1.62e+01 1fmk d.144.1.7 41702 2fvgA 340 1.62e+01 1gz8A 299 1.63e+01 d.144.1.7 83405 1qlaB 239 1.67e+01 1qlaB a.1.2.1,d.15.4.2 15679,37707 1vj0A 380 1.70e+01 b.35.1.2,c.2.1.1 100786,100787 1uirA 314 1.84e+01 c.66.1.17 99429 1bkb 136 1.85e+01 1bkb b.34.5.2,b.40.4.5 24609,25341 1vi2A 300 1.92e+01 c.2.1.7,c.58.1.5 100726,100727 1va4A 279 1.93e+01 c.69.1.12 108458 1j97A 211 1.99e+01 1f5sA c.108.1.4 62753 1qo7A 394 2.01e+01 1qo7A c.69.1.11 34697 1zxxA 319 2.05e+01 2d13A 227 2.05e+01 1xd3A 230 2.12e+01 2choA 716 2.14e+01 1j1bA 420 2.18e+01 d.144.1.7 90758 1l7mA 211 2.22e+01 c.108.1.4 73664 2furA 209 2.24e+01 2c2hA 192 2.25e+01 1ojjA 402 2.29e+01 b.29.1.10 93130 1u5uA 374 2.48e+01 1hx0A 496 2.58e+01 b.71.1.1,c.1.8.1 61346,61347 1in6A 334 2.70e+01 1hqcA a.4.5.11,c.37.1.20 62601,62602 1yrvA 169 2.74e+01 1b7yB 785 2.80e+01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16301,16302,25312,39311,40780,41456 8acn 754 2.84e+01 1amj c.8.2.1,c.83.1.1 30724,35400 1zzoA 136 2.88e+01 2evaA 307 2.88e+01 2di4A 238 2.98e+01 1u59A 287 2.99e+01 d.144.1.7 107681 1dleA 298 3.23e+01 1dleA b.47.1.2 26312 1uu3A 310 3.24e+01 d.144.1.7 99999 1i1qB 192 3.36e+01 1qdlB c.23.16.1 61544 1y0bA 197 3.42e+01 2azpA 318 3.42e+01 1rdqE 350 3.50e+01 d.144.1.7 97314 2chnA 716 3.51e+01 3ullA 132 3.58e+01 3ullA b.40.4.3 25282 1dkuA 317 3.65e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1t5jA 313 3.66e+01 a.209.1.1 99125 1bg6 359 3.66e+01 1bg6 a.100.1.5,c.2.1.6 18810,30214 2cunA 410 3.67e+01 1vi4A 174 3.71e+01 c.8.7.1 100731 1xbbA 291 3.75e+01 1tu5A 746 3.82e+01 1zxoA 291 3.83e+01 1whi 122 3.86e+01 1whi b.39.1.1 24810 1oaoC 729 3.95e+01 e.26.1.3 86746 1zjkA 403 3.98e+01 1r1dA 247 4.04e+01 c.69.1.29 96813 1g3qA 237 4.05e+01 1hyqA c.37.1.10 60237 1h1wA 289 4.16e+01 d.144.1.7 83460 1x8hA 228 4.31e+01 1cliA 345 4.36e+01 1cliA d.79.4.1,d.139.1.1 39816,41459 1yhvA 297 4.44e+01 2bsxA 253 4.47e+01 1mqoA 227 4.48e+01 d.157.1.1 103846 1i37A 260 4.49e+01 1a28A a.123.1.1 61583 1brt 277 4.52e+01 1brt c.69.1.12 34699 1q1gA 276 4.53e+01 c.56.2.1 95574 1u6rA 380 4.57e+01 1vbkA 307 4.64e+01 1yfqA 342 4.67e+01 1zbmA 280 4.68e+01 1qvcA 145 4.73e+01 3ullA b.40.4.3 25284 1gpiA 431 4.90e+01 b.29.1.10 65450 1c30B 382 4.91e+01 c.8.3.1,c.23.16.1 30736,31413 1mtzA 293 4.95e+01 c.69.1.7 79467 2mspA 126 5.03e+01 1mspA b.1.11.2 22335 1apmE 350 5.04e+01 1cdkA d.144.1.7 41628 1f3mC 297 5.11e+01 1hcl d.144.1.7 41677 1rkd 309 5.25e+01 1rkd c.72.1.1 34928 1s5lA 344 5.26e+01 1opjA 293 5.28e+01 d.144.1.7 87230 1gpr 162 5.32e+01 1gpr b.84.3.1 28267 2df7A 458 5.37e+01 1smd 496 5.47e+01 1smd b.71.1.1,c.1.8.1 27768,28755 1v95A 130 5.63e+01 c.51.1.1 108435 1jf2A 195 5.72e+01 1ej3A a.39.1.5 62930 1j1uA 306 5.82e+01 c.26.1.1 83980 1nnwA 252 5.86e+01 d.159.1.5 80674 2btoA 473 5.87e+01 1xh9A 350 5.90e+01 2frnA 278 5.92e+01 1amuA 563 5.94e+01 1amuA e.23.1.1 43351 1qv1A 195 5.96e+01 a.39.1.5 96347 1j8yF 297 6.02e+01 1ng1 a.24.13.1,c.37.1.10 62747,62748 2gjgA 248 6.15e+01 1hkhA 279 6.15e+01 c.69.1.12 90628 1ouoA 210 6.22e+01 d.4.1.6 93554 2g76A 335 6.43e+01 1vjpA 394 6.58e+01 c.2.1.3,d.81.1.3 100828,100829 1jztA 246 6.63e+01 c.104.1.1 63319 2ax6A 256 6.68e+01 1l6wA 220 6.75e+01 c.1.10.1 73632 1tksA 204 6.79e+01 d.115.1.2 107114 1ru3A 732 6.84e+01 e.26.1.3 97835 1fjhA 257 6.85e+01 1fjhB c.2.1.2 29870 1dbiA 280 6.91e+01 1gci c.41.1.1 32543 1i2kA 269 6.96e+01 e.17.1.1 90661 1auoA 218 7.00e+01 1auoA c.69.1.14 34716 1xa0A 328 7.16e+01 2bc2A 227 7.37e+01 1a7tA d.157.1.1 42031 1tqhA 247 7.39e+01 c.69.1.29 107225 2bdwA 362 7.42e+01 1wcdJ 441 7.44e+01 1s12A 94 7.49e+01 1dymA 402 7.52e+01 1celA b.29.1.10 24304 1t7rA 269 7.53e+01 a.123.1.1 106635 1i74A 309 7.64e+01 1i74A c.107.1.1 61867 1q18A 332 7.70e+01 c.55.1.7,c.55.1.7 104470,104471 1qauA 112 7.72e+01 1qauA b.36.1.1 24779 1c96A 753 7.88e+01 1amj c.8.2.1,c.83.1.1 30727,35403 1mq4A 272 8.02e+01 d.144.1.7 91391 1ls1A 295 8.09e+01 a.24.13.1,c.37.1.10 78170,78171 1rq2A 382 8.13e+01 c.32.1.1,d.79.2.1 105048,105049 2c5kT 95 8.16e+01 2b0tA 738 8.23e+01 1a9xB 379 8.25e+01 1c3oB c.8.3.1,c.23.16.1 30732,31409 1u4cA 349 8.36e+01 b.69.4.2 107666 2b3yA 888 8.41e+01 1fjgI 128 8.42e+01 1fjfI d.14.1.1 37559 1y37A 304 8.51e+01 2exrA 524 8.74e+01 1ep3B 262 8.79e+01 1ep2B b.43.4.2,c.25.1.3 25664,31554 2cbiA 594 8.84e+01