# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1v7lA 163 1.56e-02 2gp4A 628 4.42e-02 1kqfA 1015 4.45e-01 b.52.2.2,c.81.1.1 72871,72872 1fx2A 235 1.39e+00 1fx2A d.58.29.1 39430 1i21A 159 1.52e+00 1i21A d.108.1.1 61549 1i12A 160 1.56e+00 1i21A d.108.1.1 61515 1i1dA 161 1.67e+00 1i21A d.108.1.1 61526 1fx4A 231 1.67e+00 1fx2A d.58.29.1 39431 1zvyA 136 1.78e+00 1xovA 326 4.59e+00 1ydxA 406 4.66e+00 1dmr 823 5.16e+00 1dmr b.52.2.2,c.81.1.1 26904,35312 1xmbA 418 5.32e+00 1fltX 95 7.36e+00 1fltX b.1.1.4 21765 1qtyT 101 7.57e+00 1fltX b.1.1.4 21769 1fltY 95 7.64e+00 1fltX b.1.1.4 21766 2bdrA 175 8.21e+00 1kl9A 182 8.30e+00 b.40.4.5 72681 1q7hA 153 8.61e+00 b.122.1.1,d.17.6.2 96042,96043 1qsvA 101 9.24e+00 1fltX b.1.1.4 21771 1pydA 556 1.03e+01 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 2fmlA 273 1.16e+01 1vs0A 310 1.16e+01 1k3sA 113 1.19e+01 d.198.1.1 68120 1uv4A 293 1.33e+01 1yavA 159 1.35e+01 1amx 180 1.40e+01 1amx b.2.3.1 22410 2bneA 241 1.45e+01 1ox3A 109 1.49e+01 h.1.17.1 93668 2bnfB 241 1.51e+01 1ivyA 452 1.51e+01 1ivyA c.69.1.5 34654 1zeqX 84 1.55e+01 2fp8A 322 1.60e+01 1r6xA 395 1.61e+01 b.122.1.3,c.26.1.5 97167,97168 1kblA 873 1.64e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1bteA 97 1.71e+01 1bteA g.7.1.3 44463 1iqzA 81 1.80e+01 d.58.1.4 66281 1x7dA 350 1.81e+01 1dl5A 317 1.89e+01 1dl5A c.66.1.7,d.197.1.1 64720,64721 1qh0A 295 1.91e+01 b.43.4.2,c.25.1.1 68891,68892 1que 303 1.95e+01 1fnc b.43.4.2,c.25.1.1 25647,31537 2go3A 267 1.99e+01 1p42A 270 1.99e+01 d.14.1.7,d.14.1.7 87754,87755 1go2A 304 2.00e+01 b.43.4.2,c.25.1.1 76243,76244 1b2rA 304 2.00e+01 1fnc b.43.4.2,c.25.1.1 25648,31538 2bsaA 303 2.01e+01 1w34A 304 2.03e+01 1ogiA 303 2.21e+01 b.43.4.2,c.25.1.1 92914,92915 2bmwA 304 2.23e+01 1qavB 115 2.28e+01 1qauA b.36.1.1 24780 1ysjA 404 2.31e+01 1fivA 113 2.32e+01 1fmb b.50.1.1 26764 2napA 723 2.39e+01 2napA b.52.2.2,c.81.1.1 26926,35334 2a19A 175 2.44e+01 1wn5A 130 2.44e+01 1a5z 319 2.53e+01 1ceqA c.2.1.5,d.162.1.1 30181,42148 1plfA 72 2.55e+01 1tvxA d.9.1.1 37373 4fiv 113 2.57e+01 1fmb b.50.1.1 26762 1mfn 185 2.68e+01 1qr4B b.1.2.1,b.1.2.1 21984,21985 2bf5A 98 2.76e+01 1g10A 102 2.77e+01 1g10A d.137.1.1 60191 1df7A 159 2.91e+01 3dfr c.71.1.1 34885 1jsdA 319 3.01e+01 b.19.1.2 63258 2fivA 116 3.10e+01 1fmb b.50.1.1 26766 1ddt 535 3.19e+01 1ddt b.2.1.1,d.166.1.1,f.1.2.1 22379,42241,43384 1jztA 246 3.19e+01 c.104.1.1 63319 1guaA 167 3.23e+01 1ctqA c.37.1.8 32013 1xtoA 311 3.35e+01 1r3eA 309 3.37e+01 b.122.1.1,d.265.1.2 96907,96908 1uj6A 227 3.39e+01 c.124.1.4,d.58.40.1 107898,107899 1luzA 88 3.49e+01 b.40.4.5 74271 1qauA 112 3.60e+01 1qauA b.36.1.1 24779 1ireB 228 3.62e+01 b.34.4.4 76770 1ugpB 226 3.68e+01 b.34.4.4 107832 1h6zA 913 3.82e+01 c.1.12.2,c.8.1.1,d.142.1.5 70906,70907,70908 1u4cA 349 3.82e+01 b.69.4.2 107666 1e0tA 470 3.94e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 1h59B 54 4.00e+01 g.3.9.1 70881 2d9rA 104 4.02e+01 1te7A 103 4.05e+01 1o88A 353 4.10e+01 b.80.1.1 81178 1air 353 4.10e+01 1air b.80.1.1 28018 2pec 353 4.12e+01 1air b.80.1.1 28019 1e5gA 120 4.25e+01 1e5gA g.18.1.1,g.18.1.1 44843,44844 1xu9A 286 4.26e+01 1hup 141 4.37e+01 1rtm1 d.169.1.1,h.1.1.1 42354,45422 1rylA 167 4.44e+01 d.276.1.1 105124 1lgpA 116 4.46e+01 b.26.1.2 73890 1sro 76 4.48e+01 1sro b.40.4.5 25327 2fcbA 173 4.65e+01 2fcbA b.1.1.4,b.1.1.4 21781,21782 1wgvA 124 4.68e+01 1ws0A 156 4.73e+01 1yzyA 413 4.78e+01 3fivA 116 4.95e+01 1fmb b.50.1.1 26768 1napA 70 4.97e+01 1tvxA d.9.1.1 37445 1yfqA 342 4.97e+01 1tvxB 75 5.01e+01 1tvxA d.9.1.1 37442 1bh6A 274 5.02e+01 1gci c.41.1.1 32487 1tvxA 75 5.02e+01 1tvxA d.9.1.1 37441 1b8qA 127 5.09e+01 1qauA b.36.1.1 24781 1svy 114 5.10e+01 1svy d.109.1.1 40831 1aquA 297 5.16e+01 1aquA c.37.1.5 31942 2be1A 339 5.27e+01 1ky9A 448 5.30e+01 b.36.1.4,b.47.1.1 73198,73199 1t0hB 224 5.48e+01 c.37.1.1 106208 1xcrA 316 5.57e+01 1g8fA 511 5.57e+01 1g8fA b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1zvnA 99 5.64e+01 1v8bA 479 5.83e+01 2cblA 305 5.97e+01 2cblA a.39.1.7,a.48.1.1,d.93.1.1 17380,17774,40528 1kao 167 6.03e+01 1ctqA c.37.1.8 32014 2f2eA 146 6.11e+01 1yvhA 329 6.34e+01 1k28A 584 6.34e+01 b.40.8.1,b.108.1.2,d.2.1.3 68049,68050,68051 1zoiA 276 6.37e+01 1ig8A 486 6.49e+01 2yhx c.55.1.3,c.55.1.3 64746,64747 1agp 166 6.54e+01 1ctqA c.37.1.8 31985 1dik 874 6.68e+01 1dik c.1.12.2,c.8.1.1,d.142.1.5 29304,30702,41572 821p 166 6.69e+01 1ctqA c.37.1.8 31969 1ctqA 166 6.70e+01 1ctqA c.37.1.8 31965 1ky9B 448 6.72e+01 b.36.1.4,b.36.1.4,b.47.1.1 73200,73201,73202 5p21 166 6.79e+01 1ctqA c.37.1.8 31966 1a8p 258 6.82e+01 1fdr b.43.4.2,c.25.1.1 25654,31544 1hruA 188 6.84e+01 1hruA d.115.1.1 40926 1f0lA 535 6.84e+01 1ddt b.2.1.1,d.166.1.1,f.1.2.1 22377,42239,43382 1b47A 304 6.85e+01 2cblA a.39.1.7,a.48.1.1,d.93.1.1 17381,17775,40529 1wn0A 145 6.94e+01 1lam 484 7.00e+01 1lam c.50.1.1,c.56.5.3 33166,33829 2ffeA 311 7.07e+01 1upsA 420 7.17e+01 1qpbA 563 7.19e+01 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 1lucB 324 7.24e+01 1lucA c.1.16.1 29548 1xseA 295 7.35e+01 1huuA 90 7.36e+01 1huuA a.55.1.1 17897 2fpeA 62 7.49e+01 1h0hA 977 7.72e+01 b.52.2.2,c.81.1.1 76435,76436 1p99A 295 7.83e+01 c.94.1.1 94384 1lap 488 7.87e+01 1lam c.50.1.1,c.56.5.3 33171,33834 1ko7A 314 7.94e+01 c.98.2.1,c.91.1.2 72797,72798 1a88A 275 7.94e+01 1brt c.69.1.12 34707 1bllE 488 7.96e+01 1lam c.50.1.1,c.56.5.3 33170,33833 1yqyA 523 7.96e+01 2yhx 457 7.97e+01 2yhx i.12.1.1 46024 1tap 60 7.99e+01 1kigI g.8.1.2 44569 1s28A 132 8.02e+01 d.198.1.1 105223 1yb5A 351 8.18e+01 1llwA 1520 8.34e+01 b.80.4.1,c.1.4.1,d.153.1.1 74017,74018,74019 1w4xA 542 8.39e+01 c.3.1.5,c.3.1.5 109171,109172 1d0dA 60 8.49e+01 1kigI g.8.1.2 44566 1vcbC 160 8.68e+01 1vcbC b.3.3.1 22535 1lrwA 600 8.73e+01 b.70.1.1 91111 1tuaA 191 8.76e+01 d.51.1.1,d.51.1.1 107321,107322 1tx2A 297 8.77e+01 c.1.21.1 107420 1ofdA 1520 8.79e+01 b.80.4.1,c.1.4.1,d.153.1.1 86935,86936,86937 3ullA 132 8.80e+01 3ullA b.40.4.3 25282 1iz6A 138 8.94e+01 b.34.5.2,b.40.4.5 76976,76977