# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1v7lA 163 1.42e-01 2gp4A 628 2.54e-01 2fcbA 173 2.81e-01 2fcbA b.1.1.4,b.1.1.4 21781,21782 2napA 723 1.47e+00 2napA b.52.2.2,c.81.1.1 26926,35334 1kqfA 1015 1.87e+00 b.52.2.2,c.81.1.1 72871,72872 1yavA 159 2.04e+00 2bdrA 175 2.13e+00 1uheA 97 2.71e+00 1o88A 353 2.99e+00 b.80.1.1 81178 1i12A 160 3.10e+00 1i21A d.108.1.1 61515 2be1A 339 3.13e+00 1kl9A 182 3.34e+00 b.40.4.5 72681 1q7hA 153 3.35e+00 b.122.1.1,d.17.6.2 96042,96043 1zvyA 136 3.79e+00 1ivyA 452 3.79e+00 1ivyA c.69.1.5 34654 1ydxA 406 4.87e+00 1t0hB 224 5.30e+00 c.37.1.1 106208 1pueE 89 5.80e+00 1awcA a.4.5.21 16165 1kblA 873 5.98e+00 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1ju3A 583 6.13e+00 b.18.1.13,c.69.1.21 67300,67301 1t3iA 420 6.16e+00 c.67.1.3 106354 1r6xA 395 6.21e+00 b.122.1.3,c.26.1.5 97167,97168 1y0nA 78 8.26e+00 1xtoA 311 8.62e+00 1amx 180 9.97e+00 1amx b.2.3.1 22410 1ryp2 233 1.01e+01 1ryp2 1zpsA 138 1.02e+01 2gnoA 305 1.05e+01 1vhvA 268 1.12e+01 c.90.1.1 100704 1ofdA 1520 1.12e+01 b.80.4.1,c.1.4.1,d.153.1.1 86935,86936,86937 2bf5A 98 1.23e+01 1wmmA 145 1.23e+01 2f2eA 146 1.24e+01 1hkhA 279 1.25e+01 c.69.1.12 90628 2apjA 260 1.27e+01 1xfrA 128 1.29e+01 1zvhA 134 1.32e+01 1zoiA 276 1.35e+01 1e0tA 470 1.40e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 1uxtA 501 1.40e+01 c.82.1.1 108125 1tuoA 464 1.40e+01 1qbjA 81 1.41e+01 1qbjA a.4.5.19 16155 1dl5A 317 1.41e+01 1dl5A c.66.1.7,d.197.1.1 64720,64721 1ustA 93 1.43e+01 a.4.5.13 99884 1uv4A 293 1.43e+01 1yiyA 429 1.44e+01 1ybdA 239 1.48e+01 3tgl 269 1.60e+01 3tgl c.69.1.17 34733 1x13A 401 1.63e+01 1qauA 112 1.67e+01 1qauA b.36.1.1 24779 2g76A 335 1.67e+01 3ullA 132 1.70e+01 3ullA b.40.4.3 25282 1fltX 95 1.71e+01 1fltX b.1.1.4 21765 1h0hA 977 1.72e+01 b.52.2.2,c.81.1.1 76435,76436 1rylA 167 1.74e+01 d.276.1.1 105124 1snnA 227 1.84e+01 d.115.1.2 105821 1f2tB 148 1.90e+01 1f2tB 1ynpA 317 1.93e+01 1ua4A 455 1.95e+01 c.72.1.3 99128 1k7jA 206 2.00e+01 d.115.1.1 72103 1owfA 99 2.00e+01 a.55.1.1 87487 1wvgA 359 2.08e+01 1rkxA 357 2.09e+01 c.2.1.2 97631 1uebA 184 2.13e+01 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784 1ti6A 875 2.13e+01 b.52.2.2,c.81.1.1 106974,106975 2bneA 241 2.15e+01 1xsqA 168 2.19e+01 7ahlA 293 2.24e+01 7ahlA f.6.1.1 43812 1dqeA 137 2.27e+01 1dqeA a.39.2.1 17388 1iqzA 81 2.27e+01 d.58.1.4 66281 1sazA 381 2.31e+01 1vs0A 310 2.31e+01 2f1rA 171 2.34e+01 1nzyA 269 2.37e+01 1nzyA c.14.1.3 30903 2ccjA 205 2.37e+01 1ep3B 262 2.38e+01 1ep2B b.43.4.2,c.25.1.3 25664,31554 2fhzB 108 2.43e+01 1k4iA 233 2.49e+01 d.115.1.2 72056 2cwpA 112 2.54e+01 1lgpA 116 2.57e+01 b.26.1.2 73890 2g09A 297 2.61e+01 2bwvA 440 2.61e+01 1yizA 429 2.63e+01 1j54A 186 2.76e+01 c.55.3.5 77077 1upsA 420 2.91e+01 1e58A 249 2.92e+01 1qhfA c.60.1.1 59262 2ha8A 184 2.93e+01 1xmkA 79 2.98e+01 1mk4A 157 3.01e+01 d.108.1.1 84979 2amhA 207 3.04e+01 1qvcA 145 3.08e+01 3ullA b.40.4.3 25284 1aquA 297 3.10e+01 1aquA c.37.1.5 31942 1xiwB 79 3.13e+01 1dzfA 215 3.25e+01 1dzfA c.52.3.1,d.78.1.1 33344,39753 1luzA 88 3.33e+01 b.40.4.5 74271 1n9lA 109 3.39e+01 d.110.3.6 85468 1df7A 159 3.42e+01 3dfr c.71.1.1 34885 1p90A 145 3.48e+01 c.55.5.2 94377 1oeyJ 107 3.55e+01 d.15.2.2 92804 1zeqX 84 3.58e+01 1bteA 97 3.64e+01 1bteA g.7.1.3 44463 1tvxA 75 3.68e+01 1tvxA d.9.1.1 37441 1sb8A 352 3.73e+01 c.2.1.2 105410 2a6hC 1119 3.76e+01 1jb0D 138 3.82e+01 1jb0D d.187.1.1 62823 1lr7A 74 3.84e+01 g.3.11.3,g.68.1.1 84679,84680 1r7lA 110 3.89e+01 d.277.1.1 104837 1eexG 173 3.92e+01 1dioG a.23.2.1 16490 1wi6A 88 3.94e+01 2bu3A 254 3.98e+01 2fb6A 117 4.07e+01 1kqfB 294 4.08e+01 d.58.1.5,f.23.22.1 75900,75901 1v6tA 255 4.19e+01 2gu2A 312 4.21e+01 1gc0A 398 4.21e+01 c.67.1.3 70168 2ganA 190 4.32e+01 1xx1A 285 4.37e+01 1dxy 333 4.53e+01 1dxy c.2.1.4,c.23.12.1 30094,31354 1ad2 228 4.63e+01 1ad2 e.24.1.1 43353 1ro0A 216 4.65e+01 d.264.1.2 97664 1te7A 103 4.80e+01 2a19A 175 4.82e+01 1uozA 315 4.84e+01 1o54A 277 4.86e+01 c.66.1.13 92482 1xmbA 418 4.88e+01 1lc0A 294 4.89e+01 c.2.1.3,d.81.1.4 73823,73824 1vhrA 184 4.90e+01 1vhrA c.45.1.1 32651 1xcrA 316 4.93e+01 2absA 383 4.95e+01 1xnzA 264 4.95e+01 1pe1A 267 4.98e+01 c.1.10.4 94591 2furA 209 5.04e+01 2h88A 621 5.06e+01 1whzA 70 5.27e+01 1erjA 393 5.31e+01 1erjA b.69.4.1 27660 4fiv 113 5.32e+01 1fmb b.50.1.1 26762 2az4A 429 5.33e+01 2ggcA 263 5.34e+01 1bg6 359 5.34e+01 1bg6 a.100.1.5,c.2.1.6 18810,30214 2ez3A 302 5.38e+01 1tk9A 188 5.38e+01 c.80.1.3 107082 1pguA 615 5.39e+01 b.69.4.1,b.69.4.1 88069,88070 2cz1B 212 5.45e+01 2bokA 241 5.58e+01 2gjgA 248 5.61e+01 1wyzA 242 5.67e+01 1vchA 175 5.71e+01 1f00I 282 5.75e+01 1f00I b.1.14.1,b.1.14.1,d.169.1.3 22368,22369,42439 2fhfA 1083 5.78e+01 1yn3A 98 5.85e+01 1fjgE 162 5.90e+01 1pkp d.14.1.1,d.50.1.2 37553,38789 1kb0A 677 5.96e+01 a.3.1.6,b.70.1.1 68378,68379 2agkA 260 6.02e+01 1lr0A 129 6.02e+01 d.212.1.1 74213 1yfuA 174 6.02e+01 1wwkA 307 6.08e+01 1vehA 92 6.15e+01 1uu1A 335 6.19e+01 c.67.1.1 99993 1hr0W 71 6.23e+01 1ah9 b.40.4.5 25329 1jsdB 176 6.29e+01 h.3.1.1 63259 1eexB 224 6.66e+01 1dioB c.51.3.1 33213 1rds 105 6.73e+01 9rnt d.1.1.4 36236 1fseA 74 6.87e+01 1fseA a.4.6.2 60000 2erxA 172 6.90e+01 1qg3A 195 6.97e+01 1qg3A b.1.2.1,b.1.2.1 21993,21994 1v8aA 265 7.02e+01 c.72.1.2 100494 1oqeK 31 7.02e+01 g.24.1.2 87296 1nu5A 370 7.04e+01 c.1.11.2,d.54.1.1 92183,92184 1ddgA 374 7.16e+01 1amoA b.43.4.1,c.25.1.4 25671,31559 1i1nA 226 7.20e+01 c.66.1.7 71102 2as9A 210 7.24e+01 1tuaA 191 7.26e+01 d.51.1.1,d.51.1.1 107321,107322 1cruA 454 7.27e+01 1c9uA b.68.2.1 27617 1nkqA 259 7.29e+01 d.177.1.1 103862 2c71A 216 7.30e+01 2ew2A 316 7.39e+01 2fp8A 322 7.40e+01 1xu9A 286 7.41e+01 1i7nA 309 7.43e+01 c.30.1.5,d.142.1.3 83681,83682 1y9lA 115 7.48e+01 1wlyA 333 7.54e+01 1guqA 348 7.59e+01 1guqA d.13.1.2,d.13.1.2 37522,37523 1jf9A 408 7.62e+01 1c0nA c.67.1.3 62931 1vrtA 560 7.69e+01 1rthA c.55.3.1,e.8.1.2 33574,43023 1lvaA 258 7.70e+01 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1wl4A 397 7.70e+01 1rloA 271 7.79e+01 1k3sA 113 7.84e+01 d.198.1.1 68120 2auwA 170 7.86e+01 2bikB 313 7.97e+01 1r9jA 673 7.98e+01 1k78A 149 8.01e+01 a.4.1.5,a.4.1.5 68255,68256 1e19A 314 8.01e+01 1b7bA c.73.1.1 34967 1h8uA 117 8.09e+01 1h8uA d.169.1.1 60793 2cxaA 256 8.10e+01 1mjuH 227 8.15e+01 b.1.1.1,b.1.1.2 91302,91303 2gnqA 336 8.17e+01 1se8A 301 8.25e+01 b.40.4.3 105448 1xb4A 202 8.32e+01 1rypD 241 8.38e+01 1rypD d.153.1.4 41935 2h14A 317 8.39e+01 1t9bA 677 8.48e+01 1b34B 118 8.63e+01 1b34B b.38.1.1 24797 1zymA 258 8.68e+01 1zymA a.60.10.1,c.8.1.2 18110,30705 1k7cA 233 8.74e+01 c.23.10.4 68267 1byyA 53 8.91e+01 j.12.1.1 46147 1vrbA 342 8.99e+01