# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1v7lA 163 1.74e-02 3ullA 132 1.14e-01 3ullA b.40.4.3 25282 1zvyA 136 2.70e-01 1q7hA 153 4.57e-01 b.122.1.1,d.17.6.2 96042,96043 1qvcA 145 5.11e-01 3ullA b.40.4.3 25284 2fxqA 264 5.57e-01 2gp4A 628 5.89e-01 1dl5A 317 7.92e-01 1dl5A c.66.1.7,d.197.1.1 64720,64721 2gjgA 248 8.11e-01 1t0hB 224 8.93e-01 c.37.1.1 106208 1pguA 615 1.22e+00 b.69.4.1,b.69.4.1 88069,88070 1x3eA 165 1.25e+00 1kqfA 1015 2.11e+00 b.52.2.2,c.81.1.1 72871,72872 1tk9A 188 2.36e+00 c.80.1.3 107082 1ivyA 452 2.38e+00 1ivyA c.69.1.5 34654 1nkqA 259 2.48e+00 d.177.1.1 103862 1o54A 277 2.49e+00 c.66.1.13 92482 1z4hA 66 2.70e+00 1e0tA 470 2.87e+00 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 1wmmA 145 2.88e+00 1whzA 70 3.01e+00 1iz6A 138 3.12e+00 b.34.5.2,b.40.4.5 76976,76977 1aquA 297 3.45e+00 1aquA c.37.1.5 31942 1vs0A 310 3.73e+00 2napA 723 4.05e+00 2napA b.52.2.2,c.81.1.1 26926,35334 1i12A 160 4.20e+00 1i21A d.108.1.1 61515 1qauA 112 4.56e+00 1qauA b.36.1.1 24779 1zeqX 84 4.58e+00 1kqfB 294 4.67e+00 d.58.1.5,f.23.22.1 75900,75901 1t3tA 1303 4.78e+00 a.5.10.1,c.23.16.1,d.284.1.2,d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 106381,106382,106383,106384,106385,106386,106387 1yfqA 342 5.01e+00 2cxaA 256 5.10e+00 1iqzA 81 5.14e+00 d.58.1.4 66281 2aebA 322 5.50e+00 1xovA 326 5.92e+00 1k3sA 113 5.98e+00 d.198.1.1 68120 1eu3A 210 7.33e+00 1an8 b.40.2.2,d.15.6.1 25206,37795 1iv8A 720 8.66e+00 b.71.1.1,c.1.8.1 76842,76843 1b34B 118 9.09e+00 1b34B b.38.1.1 24797 1oyzA 280 9.12e+00 a.118.1.16 93775 2gu2A 312 9.24e+00 1e58A 249 9.26e+00 1qhfA c.60.1.1 59262 2crvA 120 9.68e+00 1d3vA 323 1.02e+01 1d3vA c.42.1.1 32559 2ha8A 184 1.13e+01 1vchA 175 1.20e+01 1uebA 184 1.23e+01 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784 1lr0A 129 1.26e+01 d.212.1.1 74213 1tvxA 75 1.27e+01 1tvxA d.9.1.1 37441 1v5eA 590 1.28e+01 2alaA 391 1.29e+01 1l3iA 192 1.36e+01 c.66.1.22 77676 1dqeA 137 1.36e+01 1dqeA a.39.2.1 17388 1xtoA 311 1.36e+01 1jsdA 319 1.39e+01 b.19.1.2 63258 1yavA 159 1.40e+01 1c30B 382 1.42e+01 c.8.3.1,c.23.16.1 30736,31413 1ryiA 382 1.43e+01 1wi1A 126 1.44e+01 1ruwA 69 1.53e+01 1zd0A 150 1.54e+01 1h0hA 977 1.54e+01 b.52.2.2,c.81.1.1 76435,76436 1pk6A 133 1.55e+01 b.22.1.1 94801 1szhA 161 1.55e+01 a.226.1.1 106157 3htsB 102 1.62e+01 2hts a.4.5.22 16175 1uv4A 293 1.62e+01 1j58A 385 1.63e+01 b.82.1.2 71531 1zx8A 136 1.63e+01 1vpjA 192 1.65e+01 2furA 209 1.70e+01 1bkb 136 1.72e+01 1bkb b.34.5.2,b.40.4.5 24609,25341 1a9xB 379 1.72e+01 1c3oB c.8.3.1,c.23.16.1 30732,31409 2g76A 335 1.72e+01 1hxvA 113 1.73e+01 d.26.1.1 71089 1pl8A 356 1.77e+01 b.35.1.2,c.2.1.1 94878,94879 2gsfA 373 1.79e+01 1rkqA 282 1.80e+01 c.108.1.10 97621 1j54A 186 1.81e+01 c.55.3.5 77077 1se8A 301 1.83e+01 b.40.4.3 105448 1owfA 99 1.83e+01 a.55.1.1 87487 1r6xA 395 1.85e+01 b.122.1.3,c.26.1.5 97167,97168 1bteA 97 1.86e+01 1bteA g.7.1.3 44463 2czsA 80 1.87e+01 1ugpB 226 1.88e+01 b.34.4.4 107832 1i1nA 226 1.91e+01 c.66.1.7 71102 1mh1 186 1.92e+01 1eesA c.37.1.8 32002 1x6oA 174 1.94e+01 b.34.5.2,b.40.4.5 109493,109494 1r3eA 309 2.05e+01 b.122.1.1,d.265.1.2 96907,96908 3il8 72 2.09e+01 1tvxA d.9.1.1 37356 1k8kB 394 2.11e+01 c.55.1.1 68307 1vkyA 347 2.17e+01 e.53.1.1 108696 2a9uA 144 2.20e+01 1jsmA 325 2.22e+01 b.19.1.2 63264 1wy5A 317 2.40e+01 1q6uA 245 2.40e+01 d.26.1.1 95998 1f2tB 148 2.57e+01 1f2tB 1t46A 313 2.63e+01 d.144.1.7 106397 1rcqA 357 2.73e+01 b.49.2.2,c.1.6.1 104882,104883 1afp 51 2.78e+01 1afp g.26.1.1 44947 1tig 94 2.85e+01 1tig d.68.1.1 39566 1sazA 381 2.86e+01 2cbp 96 2.90e+01 2cbp b.6.1.1 22895 1am2 199 2.94e+01 1am2 b.86.1.2 28381 2gm5A 139 2.97e+01 1mp8A 281 2.98e+01 d.144.1.7 91384 1ywnA 316 2.99e+01 1gweA 503 3.12e+01 e.5.1.1 70667 1pch 88 3.15e+01 1ptf d.94.1.1 40564 2aqlA 173 3.19e+01 1qpcA 279 3.22e+01 1fgkA d.144.1.7 41685 1te7A 103 3.29e+01 1c75A 71 3.32e+01 451c a.3.1.1 15796 1q6hA 224 3.33e+01 d.26.1.1 95975 1v8yA 170 3.36e+01 1tovA 98 3.36e+01 b.34.10.1 107179 1zvhA 134 3.58e+01 1p42A 270 3.60e+01 d.14.1.7,d.14.1.7 87754,87755 1eexG 173 3.61e+01 1dioG a.23.2.1 16490 1vqoE 178 3.72e+01 1kblA 873 3.73e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1vqvA 306 3.79e+01 2ew0A 192 3.84e+01 1fltX 95 3.87e+01 1fltX b.1.1.4 21765 1yizA 429 3.93e+01 1k78A 149 3.95e+01 a.4.1.5,a.4.1.5 68255,68256 1yiyA 429 4.00e+01 1yn8A 59 4.06e+01 1r17A 343 4.19e+01 b.2.3.4,b.2.3.4 96796,96797 2as0A 396 4.28e+01 1k0hA 117 4.29e+01 b.106.1.2 71975 1xneA 113 4.33e+01 1kopA 223 4.39e+01 2cba b.74.1.1 27966 1wocA 103 4.40e+01 1smxA 96 4.45e+01 b.40.4.5 105772 1dg6A 191 4.48e+01 1d4vB b.22.1.1 23883 1n9lA 109 4.52e+01 d.110.3.6 85468 2auwA 170 4.52e+01 2go3A 267 4.55e+01 1vc3B 97 4.73e+01 1kzlA 208 4.83e+01 b.43.4.3,b.43.4.3 77635,77636 2g1lA 104 5.01e+01 1qysA 106 5.05e+01 k.41.1.1 96603 1f53A 84 5.10e+01 1f53A b.11.1.4 23632 1xocA 520 5.11e+01 1w9sA 142 5.12e+01 1em8A 147 5.27e+01 c.128.1.1 90457 1ktbA 405 5.31e+01 b.71.1.1,c.1.8.1 72960,72961 1w70A 60 5.31e+01 1nnsA 326 5.33e+01 c.88.1.1 85910 1yb5A 351 5.38e+01 1ne7A 289 5.43e+01 c.124.1.1 91833 2be1A 339 5.47e+01 2f9hA 129 5.57e+01 1i1jA 108 5.61e+01 1i1jA b.34.2.1 61531 2c5kT 95 5.62e+01 1dxy 333 5.72e+01 1dxy c.2.1.4,c.23.12.1 30094,31354 1pht 85 5.76e+01 1ckaA b.34.2.1 24483 1g3mA 294 5.76e+01 c.37.1.5 83268 1e6cA 173 5.76e+01 1shkA c.37.1.2 59296 1vdmA 153 5.79e+01 2mcm 112 5.82e+01 2mcm b.1.7.1 22207 1zbxB 141 5.85e+01 1s12A 94 5.93e+01 1yvhA 329 5.99e+01 1ytaA 180 6.09e+01 1pzxA 289 6.12e+01 c.119.1.1 95484 1zxtA 76 6.18e+01 1i8dA 213 6.18e+01 b.43.4.3,b.43.4.3 61953,61954 1xe1A 116 6.20e+01 b.43.3.1 109571 1vhvA 268 6.24e+01 c.90.1.1 100704 1pueE 89 6.24e+01 1awcA a.4.5.21 16165 2g6fX 59 6.28e+01 2ggcA 263 6.31e+01 2as9A 210 6.41e+01 2fbyA 205 6.47e+01 1lgpA 116 6.50e+01 b.26.1.2 73890 1oruA 195 6.51e+01 b.58.1.2 93464 1f39A 101 6.54e+01 1umuA b.87.1.1 28386 1hyoA 421 6.58e+01 1qcnA b.34.8.1,d.177.1.1 59001,59002 1wozA 177 6.60e+01 1fxkC 133 6.63e+01 1fxkC a.2.5.1 15702 1u0qA 125 6.75e+01 1zlmA 58 6.77e+01 1auiB 169 6.89e+01 1auiB a.39.1.5 17325 1p4oA 322 6.93e+01 d.144.1.7 87775 1wveC 80 6.99e+01 1jb0D 138 7.01e+01 1jb0D d.187.1.1 62823 2cvbA 188 7.14e+01 1ckaA 57 7.22e+01 1ckaA b.34.2.1 24459 1qu1A 155 7.24e+01 1qu1A h.3.1.1 45670 1uj0A 62 7.34e+01 b.34.2.1 99449 1k6dA 220 7.41e+01 c.124.1.2 72082 1svy 114 7.41e+01 1svy d.109.1.1 40831 1upsA 420 7.42e+01 1uayA 242 7.52e+01 c.2.1.2 88390 1xdwA 331 7.53e+01 1z08A 170 7.60e+01 1qwlA 505 7.61e+01 e.5.1.1 96483 2g50A 530 7.62e+01 1fgkA 310 7.65e+01 1fgkA d.144.1.7 41693 1y9lA 115 7.82e+01 2fdsA 352 7.88e+01 1m7sA 484 7.89e+01 e.5.1.1 74574 1t9bA 677 8.02e+01 1weyA 104 8.03e+01 1fukA 165 8.18e+01 1fukA c.37.1.19 32409 1ydxA 406 8.20e+01 1s28A 132 8.37e+01 d.198.1.1 105223 1ou0A 207 8.38e+01 c.23.17.1 93536 1obfO 335 8.38e+01 c.2.1.3,d.81.1.1 86768,86769 1vqoL 165 8.66e+01 1oxwA 373 8.67e+01 c.19.1.3 87539 2bjqA 345 8.74e+01 1e5rA 290 8.82e+01 1e5rA b.82.2.4 59276 1mxmA 254 8.86e+01 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 1utiA 58 8.87e+01 b.34.2.1 99962 2d28C 149 8.88e+01 1xfrA 128 8.95e+01