# TARGET T0357 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0357.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 3.34133 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 P 0.072 0.007 0.010 0.005 0.296 0.609 2 K 0.329 0.013 0.017 0.007 0.205 0.429 3 A 0.854 0.007 0.006 0.005 0.052 0.076 4 I 0.949 0.003 0.002 0.005 0.016 0.024 5 I 0.949 0.005 0.002 0.006 0.012 0.028 6 N 0.779 0.006 0.002 0.015 0.079 0.119 7 K 0.316 0.006 0.014 0.033 0.406 0.225 8 K 0.119 0.011 0.017 0.027 0.447 0.379 9 T 0.131 0.022 0.016 0.055 0.405 0.371 10 E 0.182 0.014 0.013 0.183 0.296 0.312 11 T 0.315 0.011 0.021 0.311 0.149 0.194 12 I 0.473 0.008 0.017 0.375 0.063 0.063 13 I 0.641 0.003 0.011 0.291 0.031 0.023 14 A 0.475 0.005 0.006 0.456 0.030 0.028 15 V 0.402 0.003 0.009 0.485 0.047 0.055 16 G 0.273 0.005 0.016 0.319 0.171 0.215 17 A 0.308 0.010 0.061 0.269 0.201 0.151 18 A 0.378 0.043 0.084 0.190 0.165 0.140 19 M 0.340 0.021 0.116 0.097 0.342 0.084 20 A 0.241 0.009 0.066 0.114 0.429 0.140 21 E 0.180 0.011 0.058 0.145 0.400 0.206 22 I 0.174 0.013 0.015 0.031 0.409 0.357 23 P 0.190 0.011 0.024 0.062 0.242 0.471 24 L 0.331 0.030 0.064 0.165 0.169 0.241 25 V 0.396 0.013 0.082 0.180 0.142 0.187 26 E 0.417 0.008 0.083 0.174 0.149 0.168 27 V 0.255 0.016 0.073 0.157 0.211 0.287 28 R 0.145 0.031 0.023 0.093 0.221 0.487 29 D 0.037 0.006 0.006 0.066 0.138 0.748 30 E 0.007 0.001 0.014 0.883 0.040 0.056 31 K 0.018 0.001 0.013 0.921 0.026 0.021 32 F 0.014 0.001 0.009 0.953 0.015 0.009 33 F 0.018 0.001 0.006 0.953 0.012 0.010 34 E 0.035 0.001 0.010 0.934 0.012 0.008 35 A 0.033 0.001 0.007 0.939 0.010 0.010 36 V 0.027 0.002 0.006 0.926 0.033 0.006 37 K 0.027 0.004 0.008 0.828 0.121 0.013 38 T 0.018 0.004 0.008 0.568 0.341 0.062 39 G 0.031 0.006 0.004 0.010 0.714 0.235 40 D 0.103 0.003 0.001 0.001 0.141 0.752 41 R 0.818 0.009 0.001 0.001 0.026 0.146 42 V 0.957 0.002 0.001 0.001 0.009 0.032 43 V 0.982 0.001 0.001 0.001 0.003 0.013 44 V 0.966 0.004 0.001 0.001 0.004 0.026 45 N 0.776 0.007 0.001 0.001 0.176 0.040 46 A 0.042 0.001 0.044 0.002 0.905 0.007 47 D 0.009 0.001 0.045 0.001 0.939 0.006 48 E 0.010 0.001 0.023 0.001 0.960 0.005 49 G 0.195 0.012 0.004 0.001 0.567 0.220 50 Y 0.795 0.054 0.002 0.003 0.028 0.118 51 V 0.959 0.005 0.002 0.003 0.011 0.020 52 E 0.970 0.001 0.001 0.002 0.007 0.019 53 L 0.898 0.003 0.004 0.005 0.019 0.071 54 I 0.647 0.006 0.005 0.012 0.066 0.262 55 E 0.327 0.005 0.008 0.015 0.123 0.523