# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1v7lA 163 2.42e-01 1kqfA 1015 3.08e+00 b.52.2.2,c.81.1.1 72871,72872 2napA 723 3.44e+00 2napA b.52.2.2,c.81.1.1 26926,35334 1yavA 159 4.03e+00 1ko7A 314 4.39e+00 c.98.2.1,c.91.1.2 72797,72798 2gp4A 628 5.03e+00 1q7hA 153 5.09e+00 b.122.1.1,d.17.6.2 96042,96043 1pueE 89 5.72e+00 1awcA a.4.5.21 16165 1tuoA 464 6.55e+00 1ju3A 583 6.64e+00 b.18.1.13,c.69.1.21 67300,67301 1i12A 160 7.13e+00 1i21A d.108.1.1 61515 1a88A 275 7.21e+00 1brt c.69.1.12 34707 1zpsA 138 7.85e+00 1huuA 90 7.91e+00 1huuA a.55.1.1 17897 2bdrA 175 8.36e+00 1t3iA 420 8.57e+00 c.67.1.3 106354 2g5dA 422 8.88e+00 1xtoA 311 8.93e+00 1i1dA 161 9.98e+00 1i21A d.108.1.1 61526 1y0nA 78 1.03e+01 1t0hB 224 1.05e+01 c.37.1.1 106208 1t3lA 337 1.06e+01 b.34.2.1,c.37.1.1 106358,106359 2fcbA 173 1.10e+01 2fcbA b.1.1.4,b.1.1.4 21781,21782 1vhvA 268 1.12e+01 c.90.1.1 100704 1air 353 1.19e+01 1air b.80.1.1 28018 1o88A 353 1.20e+01 b.80.1.1 81178 1r6xA 395 1.29e+01 b.122.1.3,c.26.1.5 97167,97168 2f1rA 171 1.30e+01 2bnfB 241 1.31e+01 2acjA 66 1.32e+01 1hkhA 279 1.34e+01 c.69.1.12 90628 1qauA 112 1.35e+01 1qauA b.36.1.1 24779 1k7jA 206 1.40e+01 d.115.1.1 72103 2bneA 241 1.44e+01 1owfA 99 1.57e+01 a.55.1.1 87487 1uheA 97 1.58e+01 2f2eA 146 1.64e+01 1pe1A 267 1.77e+01 c.1.10.4 94591 1jcxA 267 1.77e+01 c.1.10.4 66510 1mk4A 157 1.78e+01 d.108.1.1 84979 1fxqA 267 1.85e+01 1d9eA c.1.10.4 60108 1fwsA 267 1.87e+01 1d9eA c.1.10.4 60063 1kl9A 182 1.94e+01 b.40.4.5 72681 1sazA 381 1.94e+01 1wyzA 242 1.96e+01 2g76A 335 2.01e+01 1k28A 584 2.01e+01 b.40.8.1,b.108.1.2,d.2.1.3 68049,68050,68051 1uxtA 501 2.01e+01 c.82.1.1 108125 1zoiA 276 2.02e+01 1qbjA 81 2.13e+01 1qbjA a.4.5.19 16155 1ybdA 239 2.16e+01 1zq1C 633 2.21e+01 1a6f 119 2.25e+01 1a6f d.14.1.2 37564 1x13A 401 2.32e+01 1fltX 95 2.52e+01 1fltX b.1.1.4 21765 1snnA 227 2.57e+01 d.115.1.2 105821 1pvyA 227 2.57e+01 d.115.1.2 95195 2bf5A 98 2.66e+01 1e58A 249 2.73e+01 1qhfA c.60.1.1 59262 1f2tB 148 2.80e+01 1f2tB 1b34B 118 2.81e+01 1b34B b.38.1.1 24797 1e0tA 470 2.94e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 1xmkA 79 3.05e+01 1bjx 110 3.05e+01 1bjx c.47.1.2 32774 1tuaA 191 3.07e+01 d.51.1.1,d.51.1.1 107321,107322 1h0hA 977 3.18e+01 b.52.2.2,c.81.1.1 76435,76436 1r7lA 110 3.22e+01 d.277.1.1 104837 1amx 180 3.26e+01 1amx b.2.3.1 22410 1lgpA 116 3.30e+01 b.26.1.2 73890 2cb5A 453 3.41e+01 3gcb d.3.1.1 37035 1ustA 93 3.46e+01 a.4.5.13 99884 1wvgA 359 3.46e+01 1e19A 314 3.63e+01 1b7bA c.73.1.1 34967 2ccjA 205 3.74e+01 1lr0A 129 3.74e+01 d.212.1.1 74213 1ro0A 216 3.75e+01 d.264.1.2 97664 2a6hC 1119 3.88e+01 1jf9A 408 3.89e+01 1c0nA c.67.1.3 62931 1yqyA 523 3.96e+01 1n9lA 109 4.02e+01 d.110.3.6 85468 2ez3A 302 4.03e+01 1gcuA 295 4.07e+01 1gcuA c.2.1.3,d.81.1.4 30063,39978 1uv4A 293 4.08e+01 1ydxA 406 4.13e+01 2be1A 339 4.18e+01 1xsqA 168 4.28e+01 1sb8A 352 4.33e+01 c.2.1.2 105410 1lc0A 294 4.35e+01 c.2.1.3,d.81.1.4 73823,73824 1jsdB 176 4.38e+01 h.3.1.1 63259 2avyM 117 4.41e+01 1tk9A 188 4.41e+01 c.80.1.3 107082 1erjA 393 4.41e+01 1erjA b.69.4.1 27660 1ddgA 374 4.52e+01 1amoA b.43.4.1,c.25.1.4 25671,31559 2furA 209 4.75e+01 1ynpA 317 4.86e+01 1brt 277 4.88e+01 1brt c.69.1.12 34699 1zvhA 134 4.93e+01 1rkxA 357 4.96e+01 c.2.1.2 97631 1v8aA 265 5.02e+01 c.72.1.2 100494 1p65A 73 5.14e+01 d.254.1.1 94156 1g8fA 511 5.15e+01 1g8fA b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1a49A 530 5.25e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27026,29255,33109 1k4iA 233 5.29e+01 d.115.1.2 72056 1wdeA 294 5.35e+01 2a19A 175 5.37e+01 1rds 105 5.48e+01 9rnt d.1.1.4 36236 1y9lA 115 5.52e+01 1broA 277 5.54e+01 1brt c.69.1.12 34700 1owfB 94 5.55e+01 a.55.1.1 87488 2amhA 207 5.55e+01 1vs0A 310 5.59e+01 1u5tC 202 5.59e+01 a.4.5.54,a.4.5.54 107688,107689 1xmbA 418 5.60e+01 1kblA 873 5.66e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 2fb6A 117 5.67e+01 3ullA 132 5.67e+01 3ullA b.40.4.3 25282 2gnoA 305 5.73e+01 1t8xA 267 5.83e+01 2h14A 317 5.84e+01 3tgl 269 5.94e+01 3tgl c.69.1.17 34733 1j5yA 187 5.94e+01 a.4.5.1,d.94.2.1 71592,71593 2ew2A 316 5.94e+01 1zhaA 267 5.96e+01 1vjlA 164 5.96e+01 d.257.1.1 100822 1lucB 324 6.09e+01 1lucA c.1.16.1 29548 2gnqA 336 6.19e+01 1ro2A 216 6.27e+01 d.264.1.2 97665 1x82A 190 6.47e+01 1qu1A 155 6.64e+01 1qu1A h.3.1.1 45670 1ivyA 452 6.65e+01 1ivyA c.69.1.5 34654 1bteA 97 6.81e+01 1bteA g.7.1.3 44463 1guqA 348 6.85e+01 1guqA d.13.1.2,d.13.1.2 37522,37523 1vehA 92 6.90e+01 1uu1A 335 7.00e+01 c.67.1.1 99993 1wwkA 307 7.14e+01 1xiwB 79 7.19e+01 1wkrA 340 7.24e+01 b.50.1.2 109395 1pv9A 348 7.33e+01 c.55.2.1,d.127.1.1 95157,95158 1tksA 204 7.36e+01 d.115.1.2 107114 1xfoA 357 7.41e+01 1luzA 88 7.71e+01 b.40.4.5 74271 2cwpA 112 7.74e+01 2ahjB 212 7.80e+01 2ahjB b.34.4.4 24599 1qxrA 189 7.86e+01 b.82.1.7 96552 2cblA 305 7.94e+01 2cblA a.39.1.7,a.48.1.1,d.93.1.1 17380,17774,40528 1wi6A 88 7.96e+01 1h59B 54 8.02e+01 g.3.9.1 70881 1lswA 131 8.09e+01 d.110.3.2 78181 1uw4A 91 8.11e+01 d.58.7.4 100071 1xb4A 202 8.16e+01 1h8eH 146 8.20e+01 1e79H b.93.1.1 60757 1eexB 224 8.25e+01 1dioB c.51.3.1 33213 1nmoA 247 8.28e+01 c.135.1.1 91980 1j96A 323 8.32e+01 c.1.7.1 71616 1yvhA 329 8.44e+01 1ofdA 1520 8.47e+01 b.80.4.1,c.1.4.1,d.153.1.1 86935,86936,86937 6paxA 133 8.47e+01 6paxA a.4.1.5,a.4.1.5 64758,64759 1ou0A 207 8.51e+01 c.23.17.1 93536 1xsrA 168 8.57e+01 1u5tB 169 8.62e+01 a.4.5.54,a.4.5.54 107686,107687 1wr4A 36 8.90e+01 1k1aA 241 8.97e+01 d.211.1.1 67992