# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1v7lA 163 8.55e-02 1zvyA 136 7.48e-01 2gp4A 628 7.69e-01 1kqfA 1015 9.22e-01 b.52.2.2,c.81.1.1 72871,72872 2napA 723 1.13e+00 2napA b.52.2.2,c.81.1.1 26926,35334 1vs0A 310 4.24e+00 1xtoA 311 4.69e+00 1uxtA 501 5.07e+00 c.82.1.1 108125 2apjA 260 5.38e+00 1fx2A 235 5.44e+00 1fx2A d.58.29.1 39430 1i12A 160 5.60e+00 1i21A d.108.1.1 61515 1i1dA 161 5.70e+00 1i21A d.108.1.1 61526 3ullA 132 5.91e+00 3ullA b.40.4.3 25282 1yavA 159 7.46e+00 1ko7A 314 7.53e+00 c.98.2.1,c.91.1.2 72797,72798 1pueE 89 8.23e+00 1awcA a.4.5.21 16165 2gjgA 248 8.52e+00 1o88A 353 8.53e+00 b.80.1.1 81178 1air 353 8.80e+00 1air b.80.1.1 28018 1q7hA 153 8.93e+00 b.122.1.1,d.17.6.2 96042,96043 1fltX 95 8.99e+00 1fltX b.1.1.4 21765 2cblA 305 9.12e+00 2cblA a.39.1.7,a.48.1.1,d.93.1.1 17380,17774,40528 1yvhA 329 9.44e+00 1ydxA 406 9.49e+00 1t0hB 224 1.02e+01 c.37.1.1 106208 1qvcA 145 1.03e+01 3ullA b.40.4.3 25284 1ivyA 452 1.03e+01 1ivyA c.69.1.5 34654 1t3lA 337 1.08e+01 b.34.2.1,c.37.1.1 106358,106359 1h0hA 977 1.18e+01 b.52.2.2,c.81.1.1 76435,76436 1tk9A 188 1.22e+01 c.80.1.3 107082 1jsdA 319 1.31e+01 b.19.1.2 63258 2cxaA 256 1.46e+01 1a88A 275 1.48e+01 1brt c.69.1.12 34707 1huuA 90 1.50e+01 1huuA a.55.1.1 17897 1owfA 99 1.59e+01 a.55.1.1 87487 1r6xA 395 1.60e+01 b.122.1.3,c.26.1.5 97167,97168 1se8A 301 1.72e+01 b.40.4.3 105448 2viuA 328 1.77e+01 1hgeA b.19.1.2 23797 1k3sA 113 1.83e+01 d.198.1.1 68120 1yb5A 351 1.85e+01 1y0nA 78 1.94e+01 2be1A 339 1.94e+01 1wjnA 97 1.96e+01 2fcbA 173 1.97e+01 2fcbA b.1.1.4,b.1.1.4 21781,21782 1ju3A 583 1.98e+01 b.18.1.13,c.69.1.21 67300,67301 2bf5A 98 2.00e+01 1gydB 315 2.04e+01 b.67.2.1 70751 1e58A 249 2.14e+01 1qhfA c.60.1.1 59262 1qauA 112 2.19e+01 1qauA b.36.1.1 24779 1uv4A 293 2.22e+01 1bteA 97 2.28e+01 1bteA g.7.1.3 44463 1ustA 93 2.28e+01 a.4.5.13 99884 1kl9A 182 2.31e+01 b.40.4.5 72681 1gyhA 318 2.34e+01 b.67.2.1 70757 2ahjB 212 2.34e+01 2ahjB b.34.4.4 24599 2cz1B 212 2.34e+01 1o54A 277 2.35e+01 c.66.1.13 92482 2bdrA 175 2.49e+01 1ti6A 875 2.51e+01 b.52.2.2,c.81.1.1 106974,106975 1h59B 54 2.55e+01 g.3.9.1 70881 1zeqX 84 2.62e+01 1yizA 429 2.68e+01 1yiyA 429 2.68e+01 1kblA 873 2.71e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 2cb5A 453 2.72e+01 3gcb d.3.1.1 37035 2g76A 335 2.81e+01 1zoiA 276 3.00e+01 1zd0A 150 3.04e+01 1wmmA 145 3.05e+01 1ynpA 317 3.08e+01 1iqzA 81 3.23e+01 d.58.1.4 66281 1tuoA 464 3.36e+01 1e0tA 470 3.42e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 1te7A 103 3.44e+01 1x6oA 174 3.50e+01 b.34.5.2,b.40.4.5 109493,109494 2cwaA 263 3.60e+01 1xx1A 285 3.70e+01 1oeyJ 107 3.79e+01 d.15.2.2 92804 1amx 180 3.85e+01 1amx b.2.3.1 22410 2f2eA 146 3.92e+01 1i7nA 309 3.97e+01 c.30.1.5,d.142.1.3 83681,83682 1lucB 324 4.00e+01 1lucA c.1.16.1 29548 1t3iA 420 4.01e+01 c.67.1.3 106354 2acjA 66 4.03e+01 1xmbA 418 4.07e+01 1wl9A 440 4.07e+01 2bwvA 440 4.07e+01 1k7jA 206 4.10e+01 d.115.1.1 72103 1x3eA 165 4.10e+01 1lgpA 116 4.11e+01 b.26.1.2 73890 2bnfB 241 4.22e+01 1az9 457 4.29e+01 1az9 c.55.2.1,d.127.1.1 33547,41164 1ue1A 164 4.30e+01 b.40.4.3 99243 1x7dA 350 4.41e+01 1xu9A 286 4.49e+01 1kcqA 104 4.54e+01 d.109.1.1 68449 1snnA 227 4.62e+01 d.115.1.2 105821 1qbjA 81 4.62e+01 1qbjA a.4.5.19 16155 2bneA 241 4.63e+01 1pvyA 227 4.77e+01 d.115.1.2 95195 1xnzA 264 4.78e+01 1c24A 263 4.80e+01 1c24A d.127.1.1 41148 1f2tB 148 4.85e+01 1f2tB 2f1rA 171 4.96e+01 1ir6A 424 4.97e+01 c.107.1.2 71342 2ggcA 263 4.99e+01 1z9fA 153 5.02e+01 1zpsA 138 5.14e+01 1kqfB 294 5.15e+01 d.58.1.5,f.23.22.1 75900,75901 1g8fA 511 5.19e+01 1g8fA b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1php 394 5.30e+01 16pk c.86.1.1 35452 1uheA 97 5.30e+01 1ua4A 455 5.32e+01 c.72.1.3 99128 1tksA 204 5.33e+01 d.115.1.2 107114 2cwpA 112 5.36e+01 1p7hL 286 5.40e+01 b.1.18.1,b.2.5.3 94271,94272 1a8p 258 5.41e+01 1fdr b.43.4.2,c.25.1.1 25654,31544 1bia 321 5.60e+01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1bkb 136 5.60e+01 1bkb b.34.5.2,b.40.4.5 24609,25341 1dl5A 317 5.70e+01 1dl5A c.66.1.7,d.197.1.1 64720,64721 1jztA 246 5.74e+01 c.104.1.1 63319 2fp8A 322 5.77e+01 1aquA 297 5.84e+01 1aquA c.37.1.5 31942 2fxqA 264 5.98e+01 1svy 114 6.05e+01 1svy d.109.1.1 40831 1xseA 295 6.07e+01 1f0lA 535 6.21e+01 1ddt b.2.1.1,d.166.1.1,f.1.2.1 22377,42239,43382 1a9xB 379 6.33e+01 1c3oB c.8.3.1,c.23.16.1 30732,31409 1r3eA 309 6.45e+01 b.122.1.1,d.265.1.2 96907,96908 1fb6A 105 6.46e+01 1thx c.47.1.1 32739 2ccjA 205 6.46e+01 1ofdA 1520 6.46e+01 b.80.4.1,c.1.4.1,d.153.1.1 86935,86936,86937 1v6tA 255 6.55e+01 1a02N 301 6.71e+01 1a02N b.1.18.1,b.2.5.3 21923,22440 1df7A 159 6.84e+01 3dfr c.71.1.1 34885 2fb6A 117 6.99e+01 2g8lA 299 7.05e+01 1vehA 92 7.13e+01 1tuaA 191 7.52e+01 d.51.1.1,d.51.1.1 107321,107322 1wybA 392 7.62e+01 1n9lA 109 7.67e+01 d.110.3.6 85468 1zq1C 633 7.73e+01 2d9bA 109 7.84e+01 1lrwA 600 7.85e+01 b.70.1.1 91111 1q3jA 36 7.88e+01 g.3.4.2 95692 1nkqA 259 7.89e+01 d.177.1.1 103862 1mk4A 157 7.92e+01 d.108.1.1 84979 1k4iA 233 7.95e+01 d.115.1.2 72056 1uu1A 335 7.97e+01 c.67.1.1 99993 1vpjA 192 8.12e+01 1rylA 167 8.17e+01 d.276.1.1 105124 2a19A 175 8.24e+01 1p99A 295 8.28e+01 c.94.1.1 94384 1eb7A 323 8.28e+01 1eb7A a.3.1.5,a.3.1.5 59404,59405 1iz6A 138 8.30e+01 b.34.5.2,b.40.4.5 76976,76977 1ruwA 69 8.31e+01 1pv9A 348 8.38e+01 c.55.2.1,d.127.1.1 95157,95158 1c30B 382 8.45e+01 c.8.3.1,c.23.16.1 30736,31413 1bjx 110 8.52e+01 1bjx c.47.1.2 32774 2amhA 207 8.58e+01 1r7lA 110 8.65e+01 d.277.1.1 104837 1fjgE 162 8.74e+01 1pkp d.14.1.1,d.50.1.2 37553,38789 1vchA 175 8.85e+01 2gs5A 198 8.86e+01 1wi1A 126 8.88e+01 1uebA 184 8.89e+01 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784 1y1nA 291 8.91e+01 1fjsA 234 8.98e+01 1ucyE b.47.1.2 26336