# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1v7lA 163 2.11e-01 3ullA 132 1.16e+00 3ullA b.40.4.3 25282 1zvyA 136 1.69e+00 1pguA 615 2.34e+00 b.69.4.1,b.69.4.1 88069,88070 1hilB 220 2.37e+00 1igtB b.1.1.1,b.1.1.2 19787,20897 1yfqA 342 3.08e+00 1rerA 391 3.31e+00 b.1.18.4,f.10.1.1 97327,97328 1iqzA 81 3.45e+00 d.58.1.4 66281 2c5kT 95 3.47e+00 1u4cA 349 3.91e+00 b.69.4.2 107666 1uv4A 293 6.09e+00 1o54A 277 6.60e+00 c.66.1.13 92482 1aquA 297 7.46e+00 1aquA c.37.1.5 31942 2cwaA 263 8.09e+00 1sur 215 9.33e+00 1sur c.26.2.2 31620 1a6wH 120 9.52e+00 1mfa b.1.1.1 20253 1d3vA 323 9.94e+00 1d3vA c.42.1.1 32559 1qvcA 145 1.06e+01 3ullA b.40.4.3 25284 1hyxH 224 1.07e+01 1igtB b.1.1.1,b.1.1.2 20167,21191 1ivyA 452 1.09e+01 1ivyA c.69.1.5 34654 1mwpA 96 1.10e+01 1mwpA d.170.2.1 42453 2hts 88 1.12e+01 2hts a.4.5.22 16174 2gx9A 129 1.13e+01 2fxqA 264 1.15e+01 1mp8A 281 1.29e+01 d.144.1.7 91384 1wn2A 121 1.30e+01 2gjgA 248 1.32e+01 1zeqX 84 1.33e+01 1ywnA 316 1.33e+01 1q7hA 153 1.35e+01 b.122.1.1,d.17.6.2 96042,96043 2f2sA 406 1.35e+01 2bdwA 362 1.42e+01 3htsB 102 1.46e+01 2hts a.4.5.22 16175 1z4hA 66 1.46e+01 1rkqA 282 1.51e+01 c.108.1.10 97621 1x3eA 165 1.53e+01 2ts1 419 1.57e+01 2ts1 c.26.1.1 31564 2gsfA 373 1.97e+01 1k3sA 113 2.03e+01 d.198.1.1 68120 1jj2K 164 2.04e+01 1ffkJ c.12.1.1 63096 1whzA 70 2.06e+01 2aebA 322 2.12e+01 1s72L 165 2.13e+01 c.12.1.1 105331 1ytaA 180 2.18e+01 1wmmA 145 2.19e+01 1vqoL 165 2.19e+01 1ffyA 917 2.21e+01 1qu2A a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 1zx8A 136 2.21e+01 1s2dA 167 2.25e+01 c.23.14.1 98377 2ew0A 192 2.35e+01 1wyuB 474 2.37e+01 1op3H 225 2.38e+01 b.1.1.1,b.1.1.2 87208,87209 1qvbA 481 2.39e+01 1qvbA c.1.8.4 28983 1qpcA 279 2.50e+01 1fgkA d.144.1.7 41685 1rm6C 161 2.59e+01 1g40A 244 2.61e+01 1e5gA g.18.1.1,g.18.1.1,g.18.1.1,g.18.1.1 44823,44824,44825,44826 1mh1 186 2.66e+01 1eesA c.37.1.8 32002 1vqoE 178 2.75e+01 1s72E 178 2.82e+01 d.141.1.1,d.141.1.1 105323,105324 1x7lA 149 2.82e+01 b.2.10.1 109500 1jj2E 177 2.87e+01 1ffk1 d.141.1.1,d.141.1.1 63089,63090 1ospH 218 2.91e+01 1igtB b.1.1.1,b.1.1.2 20117,21147 1c5cH 215 2.96e+01 1igtB b.1.1.1,b.1.1.2 20475,21439 1t3lA 337 3.03e+01 b.34.2.1,c.37.1.1 106358,106359 1lr0A 129 3.10e+01 d.212.1.1 74213 2alaA 391 3.12e+01 1jilA 420 3.18e+01 c.26.1.1 66745 1cm9A 74 3.19e+01 1b3aA d.9.1.1 37405 1i12A 160 3.35e+01 1i21A d.108.1.1 61515 1szwA 379 3.42e+01 d.265.1.4 99047 1f0iA 504 3.46e+01 1f0iA d.136.1.2,d.136.1.2 59566,59567 1z9fA 153 3.52e+01 1i1dA 161 3.61e+01 1i21A d.108.1.1 61526 1x6oA 174 3.63e+01 b.34.5.2,b.40.4.5 109493,109494 1qysA 106 3.72e+01 k.41.1.1 96603 1ra0A 430 3.74e+01 1tuc 63 3.77e+01 1tuc b.34.2.1 24492 1tvxA 75 3.77e+01 1tvxA d.9.1.1 37441 1vkyA 347 3.87e+01 e.53.1.1 108696 1n08A 163 3.91e+01 b.43.5.1 79730 1shyB 551 3.95e+01 b.69.12.1,g.16.2.1 105565,105566 1k6wA 426 3.96e+01 b.92.1.2,c.1.9.5 68236,68237 2napA 723 4.02e+01 2napA b.52.2.2,c.81.1.1 26926,35334 1rdo1 113 4.08e+01 1rtm1 1g3mA 294 4.24e+01 c.37.1.5 83268 1ue1A 164 4.30e+01 b.40.4.3 99243 1c30B 382 4.33e+01 c.8.3.1,c.23.16.1 30736,31413 1yavA 159 4.42e+01 2absA 383 4.52e+01 1fltX 95 4.58e+01 1fltX b.1.1.4 21765 2c2hA 192 4.80e+01 1l6rA 227 4.93e+01 c.108.1.10 77768 2plc 274 5.05e+01 2plc c.1.18.2 29614 1kqfA 1015 5.15e+01 b.52.2.2,c.81.1.1 72871,72872 1iv8A 720 5.17e+01 b.71.1.1,c.1.8.1 76842,76843 1se8A 301 5.24e+01 b.40.4.3 105448 1zxoA 291 5.28e+01 2aabH 243 5.37e+01 1weyA 104 5.40e+01 1u0qA 125 5.45e+01 1liiA 363 5.46e+01 c.72.1.1 73921 1wjnA 97 5.47e+01 1v0wA 506 5.48e+01 d.136.1.2,d.136.1.2 108220,108221 2crvA 120 5.63e+01 1n0zA 45 5.63e+01 g.41.11.1 85247 1a9xB 379 5.66e+01 1c3oB c.8.3.1,c.23.16.1 30732,31409 2gu2A 312 5.67e+01 2bz8A 58 5.68e+01 1j1uA 306 5.96e+01 c.26.1.1 83980 1rdj1 113 6.00e+01 1rtm1 2sn3 65 6.07e+01 1aho g.3.7.1 44120 1a28A 256 6.17e+01 1a28A a.123.1.1 19290 1yn8A 59 6.19e+01 1xovA 326 6.33e+01 1ng4A 390 6.37e+01 c.3.1.2,d.16.1.3 85666,85667 1aonO 97 6.43e+01 b.35.1.1 24642 1pk6A 133 6.44e+01 b.22.1.1 94801 1wq3A 322 6.45e+01 3il8 72 6.54e+01 1tvxA d.9.1.1 37356 2g76A 335 6.57e+01 1ysjA 404 6.61e+01 1txyA 104 6.69e+01 2aieP 203 6.72e+01 1qauA 112 6.76e+01 1qauA b.36.1.1 24779 1xmbA 418 6.84e+01 1zxtA 76 6.84e+01 1sr7A 259 7.01e+01 a.123.1.1 105957 1ryiA 382 7.01e+01 1b34B 118 7.05e+01 1b34B b.38.1.1 24797 1fvrA 327 7.08e+01 d.144.1.7 60047 1wzcA 249 7.16e+01 1z6oM 191 7.23e+01 2bibA 547 7.29e+01 1r4wA 226 7.33e+01 c.47.1.13 97050 1a79A 171 7.37e+01 1a79A c.52.2.1,d.75.1.1 33340,39739 2ha8A 184 7.47e+01 1zq1C 633 7.50e+01 1riiA 265 7.59e+01 1l1dA 152 7.63e+01 b.88.1.3 73452 1m1zA 513 7.63e+01 c.26.2.1,d.153.1.1 78457,78458 1e58A 249 7.78e+01 1qhfA c.60.1.1 59262 1p35A 299 7.81e+01 1p35A b.28.1.1 23925 1iz6A 138 7.82e+01 b.34.5.2,b.40.4.5 76976,76977 1h59B 54 7.83e+01 g.3.9.1 70881 2f4pA 147 7.84e+01 1jguH 217 7.98e+01 b.1.1.1,b.1.1.2 66688,66689 1mqkH 127 8.01e+01 b.1.1.1 85053 1nkqA 259 8.05e+01 d.177.1.1 103862 1t46A 313 8.07e+01 d.144.1.7 106397 1wocA 103 8.13e+01 1qlaB 239 8.28e+01 1qlaB a.1.2.1,d.15.4.2 15679,37707 1sqnA 261 8.35e+01 a.123.1.1 105944 1gpr 162 8.40e+01 1gpr b.84.3.1 28267 1qxmA 300 8.42e+01 b.42.2.1,b.42.2.1 96533,96534 1hr0W 71 8.45e+01 1ah9 b.40.4.5 25329 2as0A 396 8.73e+01 1lgpA 116 8.84e+01 b.26.1.2 73890 1oaqH 121 8.99e+01 b.1.1.1 92707