# List of top-scoring protein chains for T0356.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1fd0A 235 3.53e+00 a.123.1.1 76164 1fcyA 236 3.54e+00 2lbd a.123.1.1 19282 1exaA 246 3.58e+00 2lbd a.123.1.1 19285 2lbd 267 3.63e+00 2lbd a.123.1.1 19287 1xapA 267 6.55e+00 1xdkB 303 6.84e+00 1aoxA 203 1.23e+01 1aoxA c.62.1.1 34151 1xc3A 302 1.35e+01 1q3bA 262 1.51e+01 a.156.1.2,b.113.1.1,g.39.1.8 104518,104519,104520 1q3cA 262 1.83e+01 a.156.1.2,b.113.1.1,g.39.1.8 104521,104522,104523 1k3xA 262 1.83e+01 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1v7pC 200 1.87e+01 c.62.1.1 108408 1dkfB 235 1.89e+01 2lbd a.123.1.1 19281 1of5B 184 1.95e+01 d.17.4.2 86934 1se9A 126 2.18e+01 d.15.1.1 98821 1wqaA 455 2.24e+01 1ps9A 671 2.62e+01 c.1.4.1,c.3.1.1,c.4.1.1 95076,95077,95078 7mdhA 375 2.66e+01 1bmdA c.2.1.5,d.162.1.1 30130,42097 1dm5A 315 2.79e+01 1avc a.65.1.1 18186 1aeiA 315 2.81e+01 1avc a.65.1.1 18180 1dziA 185 2.89e+01 1aoxA c.62.1.1 59142 2bkrA 212 3.16e+01 1pybA 111 3.18e+01 b.40.4.4 95330 1st9A 143 3.18e+01 c.47.1.10 98987 1jj2L 194 3.24e+01 1ffkI d.12.1.2 63097 1di1A 300 3.38e+01 1di1A a.128.1.4 19446 2fu0A 160 3.44e+01 2f9sA 151 3.54e+01 2fswA 107 3.64e+01 1j0dA 341 3.70e+01 c.79.1.1 83902 1vkhA 273 3.91e+01 c.69.1.32 108662 1zud1 251 3.96e+01 1z5xE 310 3.96e+01 1zu4A 320 3.97e+01 2b2xA 223 4.01e+01 1zfnA 253 4.02e+01 1lbcA 263 4.17e+01 c.94.1.1 73805 1ftkA 279 4.19e+01 1gr2A c.94.1.1 35819 1k8rB 110 4.21e+01 d.15.1.5 72180 1mqhA 263 4.24e+01 c.94.1.1 91397 1p1oA 263 4.26e+01 c.94.1.1 87699 1lbbA 263 4.27e+01 c.94.1.1 73804 2anjA 263 4.27e+01 1mqdA 261 4.29e+01 c.94.1.1 85049 1mqiA 263 4.32e+01 c.94.1.1 91398 1m5dA 263 4.33e+01 c.94.1.1 78641 2fxaA 207 4.45e+01 1p1wA 263 4.47e+01 c.94.1.1 87713 1lb8A 263 4.51e+01 c.94.1.1 73800 1kmzA 130 4.55e+01 d.32.1.2 72759 1i35A 95 4.71e+01 d.15.1.5 66017 2evaA 307 5.09e+01 1z90A 469 5.11e+01 1yvbA 241 5.17e+01 1kllA 130 5.21e+01 d.32.1.2 72720 1t3cA 421 5.34e+01 d.92.1.7 106343 1l5wA 796 5.37e+01 c.87.1.4 73605 1qm5A 796 5.37e+01 1a8i c.87.1.4 35542 1iq8A 582 5.51e+01 c.1.20.1,b.122.1.1,d.17.6.1 71270,83074,83075 1xtoA 311 5.62e+01 1jyoA 130 5.66e+01 d.198.1.1 67483 1ri7A 171 5.68e+01 a.4.5.32,d.58.4.2 97504,97505 1m4vA 204 5.73e+01 b.40.2.2,d.15.6.1 74459,74460 2u1a 88 5.94e+01 2u1a d.58.7.1 39164 1ffkI 194 6.05e+01 1ffkI d.12.1.2 37494 1x40A 91 6.06e+01 1em8A 147 6.11e+01 c.128.1.1 90457 1xt9A 212 6.16e+01 1r1kD 266 6.47e+01 a.123.1.1 96819 1id1A 153 6.72e+01 1id1A c.2.1.9 62286 1yxsA 293 6.84e+01 2b1xA 470 7.06e+01 1eoqA 96 7.15e+01 1d1dA a.28.3.1 16959 1zkwA 420 7.37e+01 1zl6A 420 7.38e+01 1yu9A 175 7.41e+01 1f2dA 341 7.46e+01 1f2dA c.79.1.1 35298 1j0eA 341 7.46e+01 c.79.1.1 83906 1zn3A 420 7.50e+01 1zl5A 420 7.52e+01 1vmjA 151 7.53e+01 1zkxA 420 7.56e+01 1t3aA 421 7.71e+01 d.92.1.7 106339 1ibhA 151 7.81e+01 1yaiA b.1.8.1 62159 2bmeA 186 7.83e+01 1avoB 140 8.01e+01 1avoB 1dekA 241 8.13e+01 1dekA c.37.1.1 31842 1avbA 226 8.14e+01 1led b.29.1.1 24158 2ccmA 191 8.28e+01 2dboA 148 8.34e+01 2f51A 118 8.41e+01 1z8qA 404 8.58e+01 1jipA 403 8.63e+01 a.104.1.1 66748 1z8pA 404 8.63e+01 1jioA 403 8.67e+01 a.104.1.1 66747 1z8oA 404 8.68e+01 1b4pA 217 8.84e+01 a.45.1.1,c.47.1.5 83158,83159 1kjlA 146 8.88e+01