# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1wqaA 455 2.13e-01 2gj8A 172 1.05e+00 1oneA 436 1.54e+00 4enl c.1.11.1,d.54.1.1 29200,38844 2al2A 436 1.54e+00 2al1A 436 1.61e+00 4enl 436 1.84e+00 4enl c.1.11.1,d.54.1.1 29202,38846 1lvwA 295 1.95e+00 c.68.1.6 84723 1wduA 245 2.19e+00 d.151.1.1 109286 2oneA 436 2.32e+00 4enl c.1.11.1,d.54.1.1 29203,38847 2dbbA 151 3.08e+00 1st9A 143 3.46e+00 c.47.1.10 98987 1ri7A 171 3.54e+00 a.4.5.32,d.58.4.2 97504,97505 2f9sA 151 4.06e+00 1i35A 95 4.15e+00 d.15.1.5 66017 2ucz 165 4.43e+00 1u9aA d.20.1.1 38330 2akzA 439 4.74e+00 1yb0A 159 4.79e+00 2lbd 267 5.36e+00 2lbd a.123.1.1 19287 1te6A 439 5.39e+00 c.1.11.1,d.54.1.1 106797,106798 1em8A 147 5.44e+00 c.128.1.1 90457 1fcyA 236 5.45e+00 2lbd a.123.1.1 19282 1o69A 394 5.49e+00 c.67.1.4 92560 2u1a 88 5.78e+00 2u1a d.58.7.1 39164 4lbd 267 6.07e+00 2lbd a.123.1.1 19289 1ymqA 261 6.37e+00 1ooeA 236 6.45e+00 c.2.1.2 87196 1v60A 123 7.82e+00 1av6A 289 8.10e+00 3mag c.66.1.25 34218 1pvvA 315 8.32e+00 c.78.1.1,c.78.1.1 95190,95191 1oz9A 150 8.76e+00 d.92.1.15 93808 1xc3A 302 9.18e+00 2g5cA 281 1.04e+01 1vl6A 388 1.06e+01 c.2.1.7,c.58.1.3 108724,108725 1jmtA 104 1.07e+01 d.58.7.3 63180 1a1s 314 1.14e+01 1othA c.78.1.1,c.78.1.1 35258,35259 1u7lA 392 1.18e+01 1qdlB 195 1.19e+01 1qdlB c.23.16.1 31437 1w1wA 430 1.31e+01 3mag 307 1.36e+01 3mag c.66.1.25 34205 2f5gA 133 1.42e+01 1pzxA 289 1.52e+01 c.119.1.1 95484 1vggA 161 1.67e+01 1yp2A 451 1.81e+01 1p8kZ 254 1.82e+01 d.95.2.1,d.95.2.1 94361,94362 1d7kA 421 1.83e+01 7odcA b.49.2.3,c.1.6.1 26486,28648 1f2tB 148 1.84e+01 1f2tB 1bwsA 321 1.89e+01 1bsvA c.2.1.2 29812 1uirA 314 2.00e+01 c.66.1.17 99429 1wi1A 126 2.08e+01 1aoxA 203 2.08e+01 1aoxA c.62.1.1 34151 7odcA 424 2.10e+01 7odcA b.49.2.3,c.1.6.1 26488,28650 1fi4A 416 2.18e+01 1fi4A d.14.1.5,d.58.26.2 59847,59848 1vpt 348 2.19e+01 3mag c.66.1.25 34207 1x7oA 287 2.24e+01 1v39 322 2.31e+01 3mag c.66.1.25 34206 1vp9 322 2.31e+01 3mag c.66.1.25 34210 1a9s 289 2.32e+01 1b8oA c.56.2.1 33768 1pbn 289 2.35e+01 1b8oA c.56.2.1 33771 1lngA 87 2.37e+01 d.201.1.1 74045 2ga9A 297 2.39e+01 1qo0D 196 2.41e+01 1qo0D c.23.1.3 31125 3pnp 289 2.43e+01 1b8oA c.56.2.1 33763 1e9rA 437 2.46e+01 c.37.1.11 64827 1autL 114 2.52e+01 1hcgB g.3.11.1,g.3.11.1 44244,44245 1efuB 282 2.61e+01 1efuB d.43.1.1,a.5.2.2,d.43.1.1 38677,58975,58976 1ionA 243 2.62e+01 c.37.1.10 62633 1df3A 162 2.67e+01 1mup b.60.1.1 27134 1h1nA 305 2.69e+01 c.1.8.3 70855 1rgyA 360 2.76e+01 e.3.1.1 97456 1a9r 282 2.85e+01 1b8oA c.56.2.1 33767 2fckA 181 2.92e+01 1g3qA 237 3.01e+01 1hyqA c.37.1.10 60237 1b8bA 605 3.15e+01 1b8bA 1fxoA 293 3.16e+01 1g0rA c.68.1.6 34524 1vheA 373 3.25e+01 b.49.3.1,c.56.5.4 100669,100670 1i06A 180 3.26e+01 1mup b.60.1.1 27131 1gefA 123 3.29e+01 1gefA c.52.1.18 60465 1jv4A 162 3.29e+01 b.60.1.1 67343 1i05A 180 3.30e+01 1mup b.60.1.1 27130 1zndA 174 3.30e+01 1ndoA 449 3.33e+01 1ndoA b.33.1.2,d.129.3.3 24444,41323 1phk 298 3.34e+01 1cdkA d.144.1.7 41635 1yc5A 246 3.38e+01 1de5A 426 3.39e+01 1de5A c.1.15.2 29402 1o7nA 449 3.40e+01 b.33.1.2,d.129.3.3 81162,81163 1eg9A 449 3.40e+01 1ndoA b.33.1.2,d.129.3.3 24443,41322 1lkcA 364 3.49e+01 c.67.1.1 73978 2eueA 279 3.50e+01 1r5lA 262 3.55e+01 a.5.3.1,c.13.1.1 97099,97100 1pot 325 3.56e+01 1pot c.94.1.1 35807 1a9t 284 3.59e+01 1b8oA c.56.2.1 33765 1s3zA 165 3.60e+01 d.108.1.1 105250 1w8sA 263 3.61e+01 1b44D 129 3.61e+01 3chbD b.40.2.1 24960 1bqg 451 3.62e+01 1bqg c.1.11.2,d.54.1.1 29217,38861 1jj2L 194 3.63e+01 1ffkI d.12.1.2 63097 2cxcA 144 3.69e+01 1xqaA 113 3.76e+01 1bqk 124 3.79e+01 1bqk b.6.1.1 22889 1gz0A 253 3.81e+01 c.116.1.1,d.79.3.3 76391,76392 1wn5A 130 3.84e+01 1g0rA 293 3.87e+01 1g0rA c.68.1.6 34532 1mup 166 3.87e+01 1mup b.60.1.1 27133 2bcoA 350 3.89e+01 1de6A 426 4.03e+01 1de5A c.1.15.2 29398 1kyhA 276 4.11e+01 c.72.1.4 73222 1a4yA 460 4.13e+01 1a4yA c.10.1.1 30852 2c1cA 312 4.14e+01 1odkA 235 4.14e+01 c.56.2.1 86863 1fo8A 343 4.16e+01 1foaA c.68.1.10 59927 1zsyA 357 4.17e+01 1d8wA 426 4.17e+01 1de5A c.1.15.2 29394 1fxlA 167 4.21e+01 1b7fA d.58.7.1,d.58.7.1 39183,39184 1ipiA 123 4.23e+01 c.52.1.18 66255 1fo9A 348 4.27e+01 1foaA c.68.1.10 59928 1wstA 417 4.28e+01 2dlbA 80 4.30e+01 1b8oA 284 4.31e+01 1b8oA c.56.2.1 33762 1am7A 158 4.37e+01 1am7A d.2.1.4 36981 1ir6A 424 4.42e+01 c.107.1.2 71342 1e69B 322 4.46e+01 1e69B c.37.1.12 32377 2atxA 194 4.46e+01 1foaA 348 4.53e+01 1foaA c.68.1.10 59929 1vkhA 273 4.59e+01 c.69.1.32 108662 1hyqA 263 4.61e+01 1hyqA c.37.1.10 61412 1un8A 552 4.63e+01 c.119.1.2,a.208.1.1 103806,99661 1icxA 155 4.81e+01 d.129.3.1 71191 1qy1A 174 5.07e+01 b.60.1.1 96568 1b7gO 340 5.16e+01 1b7gO c.2.1.3,d.81.1.1 29992,39907 1k8rB 110 5.17e+01 d.15.1.5 72180 1a9nB 96 5.19e+01 1urnA d.58.7.1 39165 1jl0A 334 5.20e+01 1jenA d.156.1.1 63155 1gm6A 175 5.20e+01 b.60.1.1 70272 1innA 166 5.22e+01 1j98A d.185.1.2 62608 1vjeA 166 5.22e+01 d.185.1.2 100807 1d9uA 154 5.26e+01 1am7A d.2.1.4 59111 1g55A 343 5.30e+01 1g55A c.66.1.26 34247 1mp9A 198 5.39e+01 d.129.1.1,d.129.1.1 91385,91386 2cu1A 103 5.44e+01 1lc5A 364 5.51e+01 c.67.1.1 73827 1m41A 380 5.53e+01 c.1.16.4 78595 1w8iA 156 5.60e+01 1tin 69 5.75e+01 2sniI d.40.1.1 38580 1wvfA 520 5.86e+01 2bj7A 138 5.88e+01 1fiy 883 5.98e+01 1fiy c.1.12.3 29307 1xat 212 6.02e+01 2xat b.81.1.3 28059 1f9zA 135 6.05e+01 1qipA d.32.1.1 38484 1l0oA 150 6.16e+01 d.122.1.3 73403 1th8A 145 6.22e+01 d.122.1.3 106908 2ca6A 386 6.27e+01 1vhuA 211 6.40e+01 c.50.1.2 100703 1v7pC 200 6.43e+01 c.62.1.1 108408 1pdz 434 6.46e+01 4enl c.1.11.1,d.54.1.1 29215,38859 1zpvA 91 6.51e+01 1dj0A 264 6.53e+01 1dj0A d.265.1.1 90337 2bkqA 212 6.61e+01 2xat 212 6.62e+01 2xat b.81.1.3 28058 1mit 69 6.69e+01 1hymA d.40.1.1 38582 2a6tA 271 6.77e+01 1ysrA 150 6.80e+01 1rm8A 169 6.81e+01 d.92.1.11 97660 1j1lA 290 6.88e+01 b.82.1.12 90766 1ojxA 263 6.89e+01 c.1.10.1 93164 1k2fA 190 6.89e+01 b.8.1.2 68054 1ryiA 382 7.19e+01 1jj2R 84 7.34e+01 1ffkP d.12.1.1 63103 1vr3A 191 7.34e+01 1s72S 85 7.36e+01 d.12.1.1 105338 1ng4A 390 7.44e+01 c.3.1.2,d.16.1.3 85666,85667 1rhs 296 7.49e+01 1rhs c.46.1.2,c.46.1.2 32703,32704 1gfsA 321 7.49e+01 c.2.1.2 29811 1vaoA 560 7.54e+01 1qltA d.58.32.1,d.145.1.1 39461,41724 2c60A 111 7.69e+01 1jzxK 205 7.72e+01 i.1.1.2 67885 1bsvA 321 7.83e+01 1bsvA c.2.1.2 29809 1kblA 873 7.84e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1ar1A 558 7.84e+01 2occA f.24.1.1 43618 1ursA 402 7.85e+01 c.94.1.1 99833 1fr1A 361 7.91e+01 1gceA e.3.1.1 42734 1wvqA 167 7.91e+01 1w1kA 560 7.99e+01 d.58.32.1,d.145.1.1 109059,109060 1qu9A 128 8.00e+01 1qu9A d.79.1.1 39755 1qu9C 128 8.00e+01 1qu9A d.79.1.1 39757 1rkuA 206 8.02e+01 c.108.1.11 97627 1fa8A 135 8.02e+01 1qipA d.32.1.1 38486 1e8gA 560 8.04e+01 1qltA d.58.32.1,d.145.1.1 39455,41718 2erxA 172 8.12e+01 1ve5A 311 8.16e+01 2di4A 238 8.18e+01 1pt6A 213 8.23e+01 c.62.1.1 95091 1fzyA 149 8.28e+01 d.20.1.1 65072 1hjzA 192 8.29e+01 c.50.1.2 83520 2d0eA 407 8.34e+01 1vp4A 425 8.44e+01 1c0pA 363 8.45e+01 1an9A c.4.1.2,d.16.1.3 30647,37934 1k5dC 386 8.61e+01 c.10.1.2 68170 2a5jA 191 8.64e+01 1ii7A 333 8.79e+01 1ii7A d.159.1.4 62415 1vqoS 85 8.82e+01 1j5yA 187 8.82e+01 a.4.5.1,d.94.2.1 71592,71593 1fsz 372 8.83e+01 1fsz c.32.1.1,d.79.2.1 31750,39802 1s1fA 406 8.85e+01 2a5yB 549 8.90e+01 1zu4A 320 8.96e+01