# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1uby 367 2.46e+00 1uby a.128.1.1 19435 1a6q 382 2.99e+00 1a6q a.159.1.1,d.219.1.1 75801,75802 1aoxA 203 3.84e+00 1aoxA c.62.1.1 34151 1w44A 331 5.15e+00 1xc3A 302 5.57e+00 1q77A 138 6.34e+00 c.26.2.4 96023 1kx9A 112 6.51e+00 a.118.21.1 77602 1fps 348 6.70e+00 1uby a.128.1.1 19436 1v7pC 200 7.71e+00 c.62.1.1 108408 1wnlA 235 9.22e+00 1k3xA 262 9.23e+00 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1z8oA 404 1.11e+01 1wqwA 235 1.34e+01 1epxA 370 1.42e+01 1fbaA c.1.10.1 29150 1i05A 180 1.54e+01 1mup b.60.1.1 27130 1i06A 180 1.54e+01 1mup b.60.1.1 27131 1jipA 403 1.56e+01 a.104.1.1 66748 1df3A 162 1.68e+01 1mup b.60.1.1 27134 2apoA 357 1.74e+01 1jv4A 162 1.75e+01 b.60.1.1 67343 1mup 166 1.78e+01 1mup b.60.1.1 27133 2f94F 350 1.82e+01 1auiB 169 2.06e+01 1auiB a.39.1.5 17325 1vkhA 273 2.06e+01 c.69.1.32 108662 1yq7A 374 2.13e+01 1em8A 147 2.18e+01 c.128.1.1 90457 1yv5A 374 2.22e+01 1a41 234 2.36e+01 1a41 d.163.1.2 42174 1ie9A 259 2.43e+01 1db1A a.123.1.1 62318 1k2fA 190 2.43e+01 b.8.1.2 68054 1lngA 87 2.60e+01 d.201.1.1 74045 1y6hA 177 2.64e+01 1wqaA 455 2.65e+01 1db1A 259 2.77e+01 1db1A a.123.1.1 19329 2lbd 267 2.84e+01 2lbd a.123.1.1 19287 1ztdA 133 2.94e+01 1rzuA 485 3.03e+01 c.87.1.8 105140 1wduA 245 3.09e+01 d.151.1.1 109286 1igtB 444 3.27e+01 1igtB b.1.1.1,b.1.1.2,b.1.1.2,b.1.1.2 19765,20867,20868,20869 1zpvA 91 3.38e+01 1u96A 69 3.49e+01 1ov2A 99 3.55e+01 a.13.1.1 93580 1xqaA 113 3.57e+01 1u7pA 164 3.59e+01 1w18A 493 3.61e+01 2cunA 410 3.67e+01 4lbd 267 3.85e+01 2lbd a.123.1.1 19289 1ru3A 732 3.87e+01 e.26.1.3 97835 1qy1A 174 4.06e+01 b.60.1.1 96568 1fcyA 236 4.11e+01 2lbd a.123.1.1 19282 1zndA 174 4.15e+01 1fbaA 361 4.48e+01 1fbaA c.1.10.1 29120 1x6mA 196 4.52e+01 1g71A 347 4.64e+01 1g71A d.264.1.1 43268 1xqiA 195 4.87e+01 1vbkA 307 4.89e+01 1psqA 163 4.96e+01 c.47.1.10 88283 1aab 83 5.06e+01 1cktA a.21.1.1 16420 1q98A 165 5.06e+01 c.47.1.10 96253 1t6cA 315 5.06e+01 c.55.1.8,c.55.1.8 106558,106559 1aocA 175 5.34e+01 1aocA g.17.1.5 44817 1jnrA 643 5.38e+01 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 1kkhA 317 5.44e+01 d.14.1.5,d.58.26.3 72645,72646 1zljA 78 5.48e+01 1n67A 359 5.51e+01 b.2.3.4,b.2.3.4 85354,85355 1ymqA 261 5.62e+01 1r45A 204 5.70e+01 1ne8A 117 5.74e+01 b.34.6.2 80424 2fjbA 643 5.86e+01 1h1nA 305 5.94e+01 c.1.8.3 70855 1lre 81 6.15e+01 1lre a.13.1.1 16376 1rfzA 168 6.21e+01 a.195.1.1 97411 1cktA 71 6.41e+01 1cktA a.21.1.1 16417 1ws6A 171 6.43e+01 1r9cA 139 6.68e+01 d.32.1.2 97255 1vmeA 410 6.78e+01 c.23.5.1,d.157.1.3 108893,108894 1op1A 82 6.90e+01 a.13.1.1 93396 1ni5A 433 6.93e+01 c.26.2.5,d.229.1.1 80533,80534 2a7oA 112 7.07e+01 1igtD 444 7.55e+01 1igtB b.1.1.1,b.1.1.2,b.1.1.2,b.1.1.2 19767,20871,20872,20873 1vjqA 79 7.89e+01 k.43.1.1 100830 2a9kB 223 8.15e+01 1e6cA 173 8.19e+01 1shkA c.37.1.2 59296 2u1a 88 8.28e+01 2u1a d.58.7.1 39164 1w2fA 276 8.59e+01 d.143.1.3 109125 1e9rA 437 8.69e+01 c.37.1.11 64827