# List of top-scoring protein chains for T0356.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1wqaA 455 6.79e+00 1dekA 241 6.99e+00 1dekA c.37.1.1 31842 2fu0A 160 1.11e+01 1j0dA 341 1.51e+01 c.79.1.1 83902 1fd0A 235 1.56e+01 a.123.1.1 76164 1fcyA 236 1.57e+01 2lbd a.123.1.1 19282 1exaA 246 1.63e+01 2lbd a.123.1.1 19285 1k8rB 110 1.66e+01 d.15.1.5 72180 2lbd 267 1.70e+01 2lbd a.123.1.1 19287 1s1iV 148 2.30e+01 i.1.1.1 105196 1lb8A 263 2.35e+01 c.94.1.1 73800 1ftkA 279 2.40e+01 1gr2A c.94.1.1 35819 1p1wA 263 2.43e+01 c.94.1.1 87713 1dkfB 235 2.47e+01 2lbd a.123.1.1 19281 1i35A 95 2.85e+01 d.15.1.5 66017 1f2dA 341 2.91e+01 1f2dA c.79.1.1 35298 1j0eA 341 2.92e+01 c.79.1.1 83906 1ybyA 215 2.93e+01 1tpwA 247 2.97e+01 1amk c.1.1.1 28449 2u1a 88 2.99e+01 2u1a d.58.7.1 39164 1xapA 267 3.02e+01 1tpvA 247 3.05e+01 1amk c.1.1.1 28443 2eueA 275 3.05e+01 1tpc1 247 3.12e+01 1amk 2fh9A 274 3.15e+01 1lbcA 263 3.24e+01 c.94.1.1 73805 2f3oA 776 3.27e+01 1xdkB 303 3.27e+01 1lbbA 263 3.46e+01 c.94.1.1 73804 1mqdA 261 3.48e+01 c.94.1.1 85049 1mqiA 263 3.49e+01 c.94.1.1 91398 2anjA 263 3.49e+01 1m5dA 263 3.51e+01 c.94.1.1 78641 1mqhA 263 3.52e+01 c.94.1.1 91397 1p1oA 263 3.57e+01 c.94.1.1 87699 1srqA 341 3.69e+01 e.55.1.1 105967 1tph1 247 3.74e+01 1amk 1spqA 247 3.74e+01 c.1.1.1 105878 1su5A 247 3.79e+01 c.1.1.1 106020 1tpuA 247 3.80e+01 1amk c.1.1.1 28441 1sw7A 248 3.80e+01 c.1.1.1 106073 1sw3A 248 3.84e+01 c.1.1.1 106065 1ssdA 247 3.89e+01 c.1.1.1 105979 1sq7A 247 3.90e+01 c.1.1.1 105886 1sw0A 248 3.91e+01 c.1.1.1 106060 1tpb1 247 3.92e+01 1amk 1of5B 184 4.19e+01 d.17.4.2 86934 2ahoA 414 4.22e+01 2a25A 193 4.27e+01 1k2fA 190 4.30e+01 b.8.1.2 68054 2an6A 191 4.30e+01 1vimA 200 4.39e+01 c.80.1.3 100758 1ob8A 135 4.47e+01 1xrjA 261 4.69e+01 1uj2A 252 4.71e+01 c.37.1.6 99452 1yf9A 171 4.73e+01 1nn4A 162 5.01e+01 c.121.1.1 85888 1z90A 469 5.04e+01 2f1sA 186 5.58e+01 1pybA 111 5.60e+01 b.40.4.4 95330 2bbrA 195 5.62e+01 1hd0A 75 6.15e+01 1ha1 d.58.7.1 39188 1v7pC 200 6.17e+01 c.62.1.1 108408 1aoxA 203 6.23e+01 1aoxA c.62.1.1 34151 2an9A 207 6.24e+01 2bbzA 249 6.31e+01 1s96A 219 6.35e+01 c.37.1.1 98740 1gviA 588 6.61e+01 b.1.18.2,b.71.1.1,c.1.8.1 70604,70605,70606 1smaA 588 6.77e+01 1bvzA b.1.18.2,b.71.1.1,c.1.8.1 21854,27781,28768 1n5dA 288 6.99e+01 c.2.1.2 80030 1exzA 141 7.03e+01 1exzA a.26.1.2 16877 2gj8A 172 7.07e+01 1timA 247 7.12e+01 1amk c.1.1.1 28453 1z10A 476 7.20e+01 2cse1 1267 7.24e+01 1wmaA 276 7.35e+01 1rflA 172 7.46e+01 c.37.1.8 97384 1e6yC 247 7.51e+01 1mroC d.58.31.1 39441 1scfA 273 7.60e+01 1exzA a.26.1.2 16873 1n35A 1267 7.64e+01 e.8.1.4 79935 1r74A 294 7.78e+01 c.66.1.5 104828 1ymqA 261 8.32e+01 2fswA 107 8.36e+01 2fxaA 207 8.53e+01 2cr7A 80 8.58e+01 1zud1 251 8.80e+01 1zfnA 253 8.87e+01