# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1wqaA 455 6.37e-01 1pvvA 315 6.49e-01 c.78.1.1,c.78.1.1 95190,95191 1a6q 382 1.12e+00 1a6q a.159.1.1,d.219.1.1 75801,75802 1xc3A 302 2.98e+00 1ju2A 536 3.98e+00 c.3.1.2,d.16.1.1 77169,77170 1wdtA 665 3.99e+00 1odkA 235 4.79e+00 c.56.2.1 86863 1wmaA 276 5.97e+00 2f94F 350 7.05e+00 2ivyA 101 8.21e+00 1bazA 53 8.54e+00 1bazA a.43.1.1 17421 2al1A 436 9.40e+00 1iq8A 582 9.72e+00 c.1.20.1,b.122.1.1,d.17.6.1 71270,83074,83075 1nvmB 312 9.88e+00 c.2.1.3,d.81.1.1 86251,86252 1wuiS 267 1.02e+01 1kt6A 183 1.02e+01 b.60.1.1 84466 2bj7A 138 1.07e+01 2al2A 436 1.14e+01 1ubkS 267 1.14e+01 e.19.1.1 88423 2fu2A 102 1.14e+01 1zndA 174 1.23e+01 1othA 321 1.27e+01 1othA c.78.1.1,c.78.1.1 35260,35261 1qy1A 174 1.30e+01 b.60.1.1 96568 1oneA 436 1.35e+01 4enl c.1.11.1,d.54.1.1 29200,38844 1y2mA 716 1.40e+01 1vd5A 377 1.40e+01 a.102.1.7 108518 1q77A 138 1.40e+01 c.26.2.4 96023 1b8oA 284 1.49e+01 1b8oA c.56.2.1 33762 2c46A 241 1.66e+01 2cpgA 45 1.66e+01 2cpgA a.43.1.3 17455 2a7oA 112 1.66e+01 1yemA 179 1.80e+01 1ru3A 732 1.80e+01 e.26.1.3 97835 2cunA 410 1.80e+01 2a7mA 250 1.83e+01 1j0hA 588 1.87e+01 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1sj1A 66 1.88e+01 d.58.1.4 105595 2cyeA 133 1.91e+01 1ryiA 382 2.00e+01 2a6sA 84 2.04e+01 2bw3A 534 2.05e+01 1auiB 169 2.07e+01 1auiB a.39.1.5 17325 2fv1A 377 2.08e+01 2bjiA 277 2.09e+01 2h6dA 276 2.09e+01 1wozA 177 2.10e+01 1fcyA 236 2.11e+01 2lbd a.123.1.1 19282 1dekA 241 2.13e+01 1dekA c.37.1.1 31842 1avqA 228 2.13e+01 1avqA c.52.1.13 33326 1p4xA 250 2.14e+01 a.4.5.28,a.4.5.28 87784,87785 1e3dA 266 2.16e+01 2frvA e.19.1.1 59188 1ynfA 458 2.21e+01 1l2tA 235 2.23e+01 c.37.1.12 73514 1dzkA 157 2.26e+01 1obpA b.60.1.1 27096 2b99A 156 2.27e+01 1cg5A 141 2.28e+01 1abwA a.1.1.2 15406 1z3eB 73 2.32e+01 1d3yA 301 2.34e+01 1d3yA e.12.1.1 43252 1yj7A 171 2.34e+01 2gj8A 172 2.35e+01 1tadA 324 2.36e+01 1cipA a.66.1.1,c.37.1.8 18194,32077 1ztdA 133 2.38e+01 1lngA 87 2.39e+01 d.201.1.1 74045 1xi3A 215 2.42e+01 c.1.3.1 109601 1gen 218 2.55e+01 1gen b.66.1.1 27536 2ah6A 208 2.63e+01 1fseA 74 2.69e+01 1fseA a.4.6.2 60000 1i3dA 146 2.74e+01 a.1.1.2 61587 7odcA 424 2.82e+01 7odcA b.49.2.3,c.1.6.1 26488,28650 1nc5A 373 2.92e+01 a.102.1.6 85548 1a6m 151 3.03e+01 1a6m a.1.1.2 15018 2dc4A 165 3.07e+01 1e9rA 437 3.12e+01 c.37.1.11 64827 1bj7 156 3.22e+01 1bj7 b.60.1.1 27113 2arhA 203 3.26e+01 1v7pC 200 3.37e+01 c.62.1.1 108408 1aun 208 3.37e+01 1thv b.25.1.1 23900 1irdB 146 3.39e+01 a.1.1.2 66287 1jysA 242 3.41e+01 c.56.2.1 77216 2faoA 309 3.49e+01 1pot 325 3.61e+01 1pot c.94.1.1 35807 1w44A 331 3.63e+01 1vkhA 273 3.65e+01 c.69.1.32 108662 1h05A 146 3.65e+01 c.23.13.1 76433 1us5A 314 3.65e+01 c.94.1.1 99856 2ap1A 327 3.71e+01 1fi4A 416 3.72e+01 1fi4A d.14.1.5,d.58.26.2 59847,59848 2cwxA 430 3.73e+01 2es9A 115 3.84e+01 1mzbA 136 3.86e+01 a.4.5.42 91497 2cbiA 594 3.87e+01 1yh1A 359 3.89e+01 1bqk 124 4.04e+01 1bqk b.6.1.1 22889 1mjhA 162 4.05e+01 1mjhA c.26.2.4 31639 1aisB 200 4.07e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 1yseA 141 4.07e+01 1v74B 87 4.08e+01 a.24.20.1 100443 1vjeA 166 4.09e+01 d.185.1.2 100807 1mr3F 181 4.12e+01 c.37.1.8 79422 2bk9A 153 4.12e+01 1uqtA 482 4.19e+01 c.87.1.6 99794 1pfbA 55 4.19e+01 b.34.13.2 94655 1q3iA 214 4.22e+01 d.220.1.1 104524 2a67A 167 4.25e+01 1hb6A 86 4.27e+01 a.11.1.1 70959 1kqqA 139 4.29e+01 a.4.3.1 72885 1voqa 90 4.33e+01 1lf7A 182 4.49e+01 b.60.1.1 73878 1wvqA 167 4.54e+01 2apoA 357 4.58e+01 1zq6A 359 4.59e+01 1yqfA 203 4.62e+01 1gvjA 146 4.66e+01 a.4.5.21 90525 1pt6A 213 4.68e+01 c.62.1.1 95091 1hgxA 183 4.71e+01 1tc1A c.61.1.1 34027 1wh5A 80 4.76e+01 2bbrA 195 4.80e+01 1vbiA 344 4.80e+01 1bebA 162 4.82e+01 1bebA b.60.1.1 27115 1ws0A 156 4.83e+01 1zljA 78 4.89e+01 2aa1A 144 4.90e+01 1wrvA 308 4.95e+01 1f35A 162 5.04e+01 1f35A b.94.1.1 59628 2gakA 391 5.08e+01 1w18A 493 5.11e+01 1x1oA 286 5.12e+01 1q1vA 70 5.14e+01 a.159.4.1 104479 1wzlA 585 5.15e+01 1xyzA 347 5.18e+01 1taxA c.1.8.3 28804 1t2bA 397 5.24e+01 2g5cA 281 5.27e+01 2f05A 105 5.27e+01 1yzvA 204 5.38e+01 1it2A 146 5.38e+01 a.1.1.2 66365 1ob8A 135 5.41e+01 1b77A 228 5.41e+01 1b77A d.131.1.2,d.131.1.2 41362,41363 2g2dA 193 5.42e+01 1wj9A 211 5.47e+01 1rp4A 389 5.49e+01 a.227.1.1 105027 1c0pA 363 5.52e+01 1an9A c.4.1.2,d.16.1.3 30647,37934 1wi1A 126 5.52e+01 1epxA 370 5.56e+01 1fbaA c.1.10.1 29150 1ixmA 192 5.57e+01 1ixmA d.123.1.1 41114 1vehA 92 5.60e+01 1ne8A 117 5.63e+01 b.34.6.2 80424 1zpvA 91 5.66e+01 1x6mA 196 5.67e+01 1k3xA 262 5.68e+01 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1vr5A 547 5.68e+01 1tuaA 191 5.71e+01 d.51.1.1,d.51.1.1 107321,107322 1s4kA 120 5.73e+01 a.35.1.6 105254 1wvfA 520 5.78e+01 2igd 61 5.79e+01 2igd d.15.7.1 37821 1spgA 144 5.79e+01 1abwA a.1.1.2 15409 1iow 306 5.87e+01 1iow c.30.1.2,d.142.1.1 31713,41481 1ie9A 259 5.90e+01 1db1A a.123.1.1 62318 2fiqA 420 5.92e+01 1zbsA 291 5.93e+01 1l1lA 739 5.97e+01 c.7.1.4 73470 1v32A 101 6.08e+01 a.42.1.1 100277 1q0vA 81 6.08e+01 j.105.1.1 95514 1eceA 358 6.12e+01 1eceA c.1.8.3 28813 1wlfA 179 6.12e+01 b.52.2.3,d.31.1.1 109396,109397 2d5xB 146 6.33e+01 2aeeA 211 6.56e+01 1o3uA 135 6.58e+01 a.24.16.3 86615 1lj2A 110 6.58e+01 h.1.13.2 73926 1uirA 314 6.58e+01 c.66.1.17 99429 1g2rA 100 6.67e+01 1g2rA d.192.1.1 60231 1viaA 175 6.69e+01 c.37.1.2 100754 2gsq 202 6.78e+01 1pd21 a.45.1.1,c.47.1.5 17715,33009 1ka2A 499 6.79e+01 d.92.1.5 77305 1ukuA 102 6.85e+01 d.58.5.2 99533 1n9lA 109 6.87e+01 d.110.3.6 85468 1uarA 285 6.90e+01 c.46.1.2,c.46.1.2 107762,107763 1i4uA 181 6.96e+01 b.60.1.1 61732 1jnrA 643 7.15e+01 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 2ajrA 331 7.17e+01 2vhbA 146 7.17e+01 2vhbA a.1.1.2 15629 1o5kA 306 7.23e+01 c.1.10.1 92504 1ycsB 239 7.24e+01 1ycsB d.211.1.1,b.34.2.1 19155,24553 1w8iA 156 7.25e+01 1irdA 141 7.26e+01 a.1.1.2 66286 1xhdA 173 7.29e+01 1gvdA 52 7.32e+01 a.4.1.3 83338 1y1pA 342 7.32e+01 1nrjB 218 7.34e+01 c.37.1.8 86125 2fu0A 160 7.36e+01 1aocA 175 7.47e+01 1aocA g.17.1.5 44817 1w9yA 319 7.56e+01 2a72A 146 7.62e+01 1l1eA 287 7.67e+01 c.66.1.18 73454 2di4A 238 7.71e+01 1wstA 417 7.82e+01 1nu4A 97 7.83e+01 d.58.7.1 80731 1gtkA 313 7.87e+01 c.94.1.1,d.50.2.1 76346,76347 1pbyA 489 7.88e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 94417,94418,94419,94420,94421 2gnoA 305 7.88e+01 2mprA 421 7.92e+01 2mprA f.4.3.2 43788 1kl1A 419 7.96e+01 c.67.1.4 72663 2f0aA 98 7.97e+01 1yjsA 419 7.99e+01 1wm1A 317 8.01e+01 c.69.1.7 109405 1uddA 226 8.03e+01 a.132.1.3 107776 1cydA 244 8.09e+01 1cydA c.2.1.2 29825 1em8A 147 8.12e+01 c.128.1.1 90457 1oaa 259 8.16e+01 1oaa c.2.1.2 29829 1i88A 389 8.17e+01 c.95.1.2,c.95.1.2 66070,66071 2cviA 83 8.19e+01 1vlpA 441 8.22e+01 d.41.2.2,d.41.2.3 108840,108841 1jayA 212 8.24e+01 c.2.1.6 66478 2d69A 430 8.27e+01 1nar 290 8.28e+01 1nar c.1.8.5 28988 2f1fA 164 8.28e+01 1i27A 73 8.32e+01 1i27A a.4.5.30 61555 1epwA 1290 8.39e+01 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1hhnA 101 8.46e+01 1hhnA b.104.1.1 61043 2gdm 153 8.65e+01 2gdm a.1.1.2 15212 1aquA 297 8.66e+01 1aquA c.37.1.5 31942 2fupA 168 8.66e+01 1vp8A 201 8.66e+01 1xhcA 367 8.71e+01 1oaoC 729 8.75e+01 e.26.1.3 86746 1ghhA 81 8.79e+01 1ghhA d.57.1.1 38940 2gwfA 157 8.84e+01 1g291 372 8.87e+01 1g291 1whbA 157 8.89e+01 1xouB 95 8.89e+01 1aba 87 8.92e+01 1aba c.47.1.1 32760 1ro2A 216 8.93e+01 d.264.1.2 97665 2gb7A 305 8.96e+01 1kjqA 391 9.00e+01 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618