# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fckA 181 3.75e-01 1wqaA 455 4.06e-01 2gj8A 172 5.36e-01 1yb0A 159 8.80e-01 1xahA 354 8.94e-01 1ymqA 261 1.25e+00 2al2A 436 1.99e+00 1oneA 436 2.07e+00 4enl c.1.11.1,d.54.1.1 29200,38844 1qo0D 196 2.10e+00 1qo0D c.23.1.3 31125 2al1A 436 2.12e+00 1vggA 161 2.50e+00 2akzA 439 2.54e+00 1vp4A 425 3.09e+00 1uirA 314 4.07e+00 c.66.1.17 99429 1e9rA 437 4.33e+00 c.37.1.11 64827 2g5cA 281 4.52e+00 1r5tA 142 5.12e+00 c.97.1.1 104812 1u7lA 392 5.32e+00 1oz9A 150 5.44e+00 d.92.1.15 93808 1ryiA 382 5.51e+00 1z7xW 461 5.94e+00 1b8oA 284 6.00e+00 1b8oA c.56.2.1 33762 1vheA 373 6.05e+00 b.49.3.1,c.56.5.4 100669,100670 1lvwA 295 6.11e+00 c.68.1.6 84723 1lc5A 364 6.15e+00 c.67.1.1 73827 2dbbA 151 6.15e+00 1f2tB 148 6.72e+00 1f2tB 1o7nA 449 7.10e+00 b.33.1.2,d.129.3.3 81162,81163 2c1lA 358 7.58e+00 1wdtA 665 7.85e+00 2ajrA 331 8.47e+00 1fcyA 236 8.89e+00 2lbd a.123.1.1 19282 1ht6A 405 9.31e+00 b.71.1.1,c.1.8.1 83629,83630 1yp2A 451 9.33e+00 2a7mA 250 9.73e+00 1bqk 124 1.04e+01 1bqk b.6.1.1 22889 2gzaA 361 1.12e+01 2ffuA 501 1.12e+01 3pmgA 561 1.18e+01 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1ursA 402 1.19e+01 c.94.1.1 99833 1yc5A 246 1.24e+01 1k8rB 110 1.27e+01 d.15.1.5 72180 1tcvA 287 1.33e+01 1np7A 489 1.34e+01 a.99.1.1,c.28.1.1 80677,80678 1qysA 106 1.37e+01 k.41.1.1 96603 1odkA 235 1.38e+01 c.56.2.1 86863 1r5lA 262 1.41e+01 a.5.3.1,c.13.1.1 97099,97100 1pvvA 315 1.47e+01 c.78.1.1,c.78.1.1 95190,95191 2a5dA 175 1.48e+01 1wi1A 126 1.52e+01 1xewY 172 1.58e+01 1fo8A 343 1.72e+01 1foaA c.68.1.10 59927 1pzxA 289 1.83e+01 c.119.1.1 95484 1w77A 228 1.92e+01 2faoA 309 1.94e+01 1oc2A 348 2.01e+01 c.2.1.2 92765 1d8wA 426 2.03e+01 1de5A c.1.15.2 29394 1wqwA 235 2.09e+01 1mqiA 263 2.10e+01 c.94.1.1 91398 2an9A 207 2.24e+01 1h1nA 305 2.27e+01 c.1.8.3 70855 1xc3A 302 2.33e+01 1s2dA 167 2.33e+01 c.23.14.1 98377 1kyhA 276 2.34e+01 c.72.1.4 73222 1tfr 305 2.37e+01 1tfr a.60.7.1,c.120.1.2 18081,33351 2bsxA 253 2.41e+01 1fxoA 293 2.46e+01 1g0rA c.68.1.6 34524 1tvfA 369 2.47e+01 b.105.1.2,e.3.1.1 107358,107359 2ab5A 269 2.70e+01 1g3qA 237 2.71e+01 1hyqA c.37.1.10 60237 1wvqA 167 2.83e+01 2fuvA 549 2.86e+01 1v60A 123 2.91e+01 1ooeA 236 2.92e+01 c.2.1.2 87196 1tzjA 338 2.99e+01 2ge3A 170 3.00e+01 1ko6A 187 3.00e+01 b.119.1.1 77471 1ywxA 102 3.01e+01 1wstA 417 3.05e+01 1s3zA 165 3.09e+01 d.108.1.1 105250 1pot 325 3.10e+01 1pot c.94.1.1 35807 1g55A 343 3.17e+01 1g55A c.66.1.26 34247 1zz1A 369 3.20e+01 1ve0A 134 3.21e+01 1pc6A 146 3.23e+01 d.262.1.1 94430 2cw5A 255 3.35e+01 1x7oA 287 3.38e+01 1zejA 293 3.53e+01 1id1A 153 3.54e+01 1id1A c.2.1.9 62286 1geqA 248 3.55e+01 2tysA c.1.2.4 28589 1z4rA 168 3.55e+01 1twfK 120 3.66e+01 1gegA 256 3.71e+01 1ybvA c.2.1.2 29888 1jcfA 344 3.83e+01 c.55.1.1,c.55.1.1 62878,62879 1pcfA 66 3.90e+01 1pcfA d.18.1.1 38142 1d3yA 301 3.91e+01 1d3yA e.12.1.1 43252 1w96A 554 3.93e+01 1okgA 373 3.94e+01 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1in0A 163 3.94e+01 d.58.49.1,d.58.49.1 83694,83695 1jmtA 104 4.00e+01 d.58.7.3 63180 1wduA 245 4.05e+01 d.151.1.1 109286 1jmsA 381 4.06e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1mp9A 198 4.13e+01 d.129.1.1,d.129.1.1 91385,91386 1wn5A 130 4.16e+01 2fsrA 195 4.16e+01 2bkrA 212 4.16e+01 2akoA 251 4.27e+01 1erw 105 4.35e+01 1erv c.47.1.1 32745 1fvgA 199 4.36e+01 1fvaA d.58.28.1 39408 1i88A 389 4.49e+01 c.95.1.2,c.95.1.2 66070,66071 1o3yA 166 4.50e+01 c.37.1.8 86618 1vkhA 273 4.68e+01 c.69.1.32 108662 2gkeA 274 4.86e+01 2ew8A 249 4.89e+01 1bdfA 235 4.92e+01 1bdfA d.74.3.1,d.181.1.1 39727,42602 1vi4A 174 4.94e+01 c.8.7.1 100731 1y9aA 360 5.00e+01 1jndA 420 5.01e+01 c.1.8.5,d.26.3.1 71757,71758 1senA 164 5.02e+01 c.47.1.1 105465 2a1iA 146 5.08e+01 1j27A 102 5.13e+01 d.58.50.1 90778 2cfxA 144 5.21e+01 1yloA 348 5.21e+01 1wy7A 207 5.27e+01 1v8hA 107 5.30e+01 1n4qB 377 5.33e+01 a.102.4.3 91636 1xreA 217 5.33e+01 1fi4A 416 5.36e+01 1fi4A d.14.1.5,d.58.26.2 59847,59848 2bo4A 397 5.38e+01 1kdoA 227 5.39e+01 c.37.1.1 68478 2cxcA 144 5.41e+01 1o69A 394 5.48e+01 c.67.1.4 92560 2f5gA 133 5.49e+01 2av5A 120 5.53e+01 1hfc 169 5.53e+01 1hfc d.92.1.11 40335 1cvrA 435 5.76e+01 1cvrA b.1.18.12,c.17.1.2 21949,31006 2f4nA 273 5.81e+01 2cxkA 95 5.82e+01 1szqA 483 5.97e+01 e.44.1.1 99045 1t3tA 1303 6.00e+01 a.5.10.1,c.23.16.1,d.284.1.2,d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 106381,106382,106383,106384,106385,106386,106387 2g2cA 167 6.05e+01 1ob8A 135 6.05e+01 1h5rA 293 6.07e+01 c.68.1.6 65623 1o4sA 389 6.12e+01 c.67.1.1 86620 1wtaA 275 6.14e+01 1r6xA 395 6.29e+01 b.122.1.3,c.26.1.5 97167,97168 1nzjA 298 6.29e+01 c.26.1.1 92377 2cviA 83 6.33e+01 1j0dA 341 6.35e+01 c.79.1.1 83902 1erv 105 6.37e+01 1erv c.47.1.1 32743 2arhA 203 6.39e+01 1s96A 219 6.67e+01 c.37.1.1 98740 1nrzA 164 6.69e+01 c.38.1.1 86131 1y5oA 115 6.74e+01 1dekA 241 6.88e+01 1dekA c.37.1.1 31842 1d2fA 390 6.89e+01 1d2fA c.67.1.3 34411 1rwzA 245 6.91e+01 d.131.1.2,d.131.1.2 98005,98006 2c6qA 351 6.93e+01 2ez6A 221 6.96e+01 1b77A 228 6.99e+01 1b77A d.131.1.2,d.131.1.2 41362,41363 1u04A 771 7.02e+01 b.34.14.1,c.55.3.10 107539,107540 1m1hA 248 7.05e+01 b.114.1.1,d.58.42.1 78415,78416 1k6dA 220 7.09e+01 c.124.1.2 72082 2fb1A 226 7.11e+01 1u8sA 192 7.14e+01 d.58.18.5,d.58.18.5 107737,107738 1xwyA 264 7.16e+01 1mml 265 7.19e+01 1mml e.8.1.2 43015 1zpvA 91 7.30e+01 1zmaA 118 7.30e+01 1wjuA 100 7.39e+01 1r8sA 164 7.40e+01 c.37.1.8 97247 1gd1O 334 7.43e+01 1dssG c.2.1.3,d.81.1.1 29962,39877 7odcA 424 7.44e+01 7odcA b.49.2.3,c.1.6.1 26488,28650 2choA 716 7.51e+01 1i12A 160 7.76e+01 1i21A d.108.1.1 61515 1p5dX 463 7.77e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1fcdA 401 7.83e+01 1fcdA c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 1efpB 252 7.88e+01 1efvB c.26.2.3 31636 1yvoA 172 7.94e+01 2chnA 716 8.05e+01 2erxA 172 8.13e+01 2ao9A 155 8.25e+01 1l2tA 235 8.28e+01 c.37.1.12 73514 2d00A 109 8.38e+01 1nd4A 264 8.39e+01 d.144.1.6 91815 2ca6A 386 8.41e+01 1iz6A 138 8.44e+01 b.34.5.2,b.40.4.5 76976,76977 2b0jA 358 8.51e+01 1m65A 245 8.64e+01 c.6.3.1 84847 2fiqA 420 8.64e+01 1y42X 392 8.70e+01 1w8sA 263 8.70e+01 1wwzA 159 8.73e+01 1euvB 86 8.73e+01 1a5r d.15.1.1 37598 1mzgA 146 8.74e+01 d.224.1.1 79696 2ffyA 358 8.78e+01 1wlfA 179 8.82e+01 b.52.2.3,d.31.1.1 109396,109397 2g40A 224 8.86e+01 1wdvA 152 8.91e+01 1u2zA 433 8.93e+01 c.66.1.31 107626 1iq8A 582 8.95e+01 c.1.20.1,b.122.1.1,d.17.6.1 71270,83074,83075 1wa3A 205 8.98e+01