# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1wqaA 455 1.55e-01 2dbbA 151 1.72e-01 2gj8A 172 3.29e-01 1qo0D 196 3.74e-01 1qo0D c.23.1.3 31125 2fckA 181 4.81e-01 1vp4A 425 6.82e-01 2al2A 436 7.01e-01 1e9rA 437 7.25e-01 c.37.1.11 64827 2al1A 436 7.60e-01 1oneA 436 7.63e-01 4enl c.1.11.1,d.54.1.1 29200,38844 1uirA 314 1.03e+00 c.66.1.17 99429 2ffuA 501 1.17e+00 1ymqA 261 1.26e+00 1yb0A 159 1.39e+00 1bqk 124 1.51e+00 1bqk b.6.1.1 22889 2g5cA 281 1.66e+00 1jztA 246 1.72e+00 c.104.1.1 63319 2akzA 439 2.14e+00 2gzaA 361 2.17e+00 1u7lA 392 2.19e+00 1vggA 161 2.58e+00 1r5tA 142 3.05e+00 c.97.1.1 104812 1v60A 123 3.24e+00 1ko6A 187 3.53e+00 b.119.1.1 77471 2arhA 203 3.54e+00 1wduA 245 3.68e+00 d.151.1.1 109286 2fuvA 549 3.81e+00 2b0jA 358 3.95e+00 1f2tB 148 4.39e+00 1f2tB 1qysA 106 4.54e+00 k.41.1.1 96603 1yovA 537 4.57e+00 1gegA 256 4.66e+00 1ybvA c.2.1.2 29888 1fcyA 236 4.83e+00 2lbd a.123.1.1 19282 1rq2A 382 4.90e+00 c.32.1.1,d.79.2.1 105048,105049 1lc5A 364 5.34e+00 c.67.1.1 73827 2a5dA 175 6.26e+00 1pvvA 315 6.59e+00 c.78.1.1,c.78.1.1 95190,95191 1xahA 354 6.78e+00 2bfwA 200 7.17e+00 1xewY 172 7.45e+00 1x7oA 287 7.62e+00 2f5gA 133 8.02e+00 1odkA 235 8.16e+00 c.56.2.1 86863 1w77A 228 8.62e+00 1tfr 305 8.86e+00 1tfr a.60.7.1,c.120.1.2 18081,33351 1ryiA 382 8.99e+00 1b8oA 284 9.18e+00 1b8oA c.56.2.1 33762 1u2zA 433 9.65e+00 c.66.1.31 107626 1oz9A 150 9.85e+00 d.92.1.15 93808 1m1hA 248 1.04e+01 b.114.1.1,d.58.42.1 78415,78416 3pmgA 561 1.06e+01 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 2an9A 207 1.08e+01 1w8sA 263 1.12e+01 1i9gA 280 1.13e+01 c.66.1.13 62090 1r6xA 395 1.14e+01 b.122.1.3,c.26.1.5 97167,97168 1yp2A 451 1.14e+01 1y81A 138 1.16e+01 1qahA 136 1.19e+01 d.79.1.1 96338 1lvwA 295 1.19e+01 c.68.1.6 84723 1ht6A 405 1.20e+01 b.71.1.1,c.1.8.1 83629,83630 2cw5A 255 1.21e+01 1wi1A 126 1.22e+01 1hqz1 141 1.29e+01 1om1A 332 1.29e+01 d.144.1.7 93347 1vheA 373 1.31e+01 b.49.3.1,c.56.5.4 100669,100670 1fvgA 199 1.32e+01 1fvaA d.58.28.1 39408 2cviA 83 1.33e+01 1w6uA 302 1.34e+01 1mzgA 146 1.34e+01 d.224.1.1 79696 1wstA 417 1.37e+01 1v8hA 107 1.47e+01 2ab5A 269 1.49e+01 2bsxA 253 1.49e+01 1wjuA 100 1.50e+01 2c0nA 203 1.51e+01 1j0dA 341 1.52e+01 c.79.1.1 83902 1j27A 102 1.52e+01 d.58.50.1 90778 2faoA 309 1.53e+01 1ursA 402 1.54e+01 c.94.1.1 99833 2c1lA 358 1.56e+01 1wvfA 520 1.58e+01 1xwyA 264 1.58e+01 1o9gA 250 1.61e+01 c.66.1.29 86692 1sviA 195 1.63e+01 c.37.1.8 106048 1in0A 163 1.68e+01 d.58.49.1,d.58.49.1 83694,83695 1z4rA 168 1.69e+01 1id1A 153 1.71e+01 1id1A c.2.1.9 62286 1pzxA 289 1.87e+01 c.119.1.1 95484 1ve0A 134 1.90e+01 1wdvA 152 1.94e+01 1g63A 181 1.96e+01 1g5qA c.34.1.1 60299 1kyhA 276 1.98e+01 c.72.1.4 73222 1kv7A 488 2.01e+01 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 2cfxA 144 2.06e+01 1jmtA 104 2.09e+01 d.58.7.3 63180 1pc6A 146 2.11e+01 d.262.1.1 94430 1o7nA 449 2.13e+01 b.33.1.2,d.129.3.3 81162,81163 2fsrA 195 2.15e+01 1d8wA 426 2.19e+01 1de5A c.1.15.2 29394 1pcfA 66 2.21e+01 1pcfA d.18.1.1 38142 2g2cA 167 2.22e+01 2dlbA 80 2.24e+01 1vjeA 166 2.25e+01 d.185.1.2 100807 1s96A 219 2.30e+01 c.37.1.1 98740 1zejA 293 2.32e+01 3tgl 269 2.33e+01 3tgl c.69.1.17 34733 1bazA 53 2.37e+01 1bazA a.43.1.1 17421 1u04A 771 2.38e+01 b.34.14.1,c.55.3.10 107539,107540 1k8rB 110 2.41e+01 d.15.1.5 72180 1vcvA 226 2.43e+01 1bdfA 235 2.45e+01 1bdfA d.74.3.1,d.181.1.1 39727,42602 2akoA 251 2.46e+01 1fo8A 343 2.47e+01 1foaA c.68.1.10 59927 1s3zA 165 2.51e+01 d.108.1.1 105250 1rwzA 245 2.54e+01 d.131.1.2,d.131.1.2 98005,98006 1ftrA 296 2.55e+01 1ftrA d.58.33.1,d.58.33.1 39485,39486 7odcA 424 2.61e+01 7odcA b.49.2.3,c.1.6.1 26488,28650 1ru3A 732 2.63e+01 e.26.1.3 97835 2av4A 162 2.63e+01 1n4qB 377 2.64e+01 a.102.4.3 91636 1o3yA 166 2.65e+01 c.37.1.8 86618 1hfc 169 2.67e+01 1hfc d.92.1.11 40335 2g40A 224 2.69e+01 1yr2A 741 2.71e+01 1cl8A 276 2.74e+01 1ckqA c.52.1.1 33230 2cx5A 158 2.76e+01 1r8sA 164 2.77e+01 c.37.1.8 97247 1mzbA 136 2.78e+01 a.4.5.42 91497 1i52A 236 2.81e+01 1i52A c.68.1.13 61767 1tcvA 287 2.81e+01 2gcfA 73 2.83e+01 1wvqA 167 2.85e+01 2glfA 450 2.95e+01 1qo3C 137 2.95e+01 1qo3C d.169.1.1 42350 1sw6A 327 2.96e+01 1sw6A d.211.1.1 19176 1r5lA 262 2.98e+01 a.5.3.1,c.13.1.1 97099,97100 1zpvA 91 2.98e+01 1qe5A 266 2.98e+01 1b8oA c.56.2.1 33784 2a7mA 250 3.00e+01 1wdtA 665 3.07e+01 1vhwA 253 3.09e+01 c.56.2.1 100706 1iq8A 582 3.10e+01 c.1.20.1,b.122.1.1,d.17.6.1 71270,83074,83075 1ws0A 156 3.11e+01 1kk1A 410 3.13e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1ztuA 341 3.17e+01 1z7xW 461 3.21e+01 1nrzA 164 3.26e+01 c.38.1.1 86131 1f35A 162 3.28e+01 1f35A b.94.1.1 59628 1s4iA 175 3.28e+01 1kicA 339 3.35e+01 c.70.1.1 72510 2cxcA 144 3.36e+01 2cxxA 190 3.42e+01 1yzfA 195 3.42e+01 1q9uA 130 3.43e+01 d.129.7.1 96314 1i60A 278 3.44e+01 c.1.15.4 71118 1y9aA 360 3.45e+01 1jndA 420 3.45e+01 c.1.8.5,d.26.3.1 71757,71758 1g3qA 237 3.47e+01 1hyqA c.37.1.10 60237 1e8cA 498 3.51e+01 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1o66A 275 3.51e+01 c.1.12.8 92547 2fiqA 420 3.55e+01 1oxxK 353 3.57e+01 b.40.6.3,c.37.1.12 93715,93716 2bo4A 397 3.58e+01 1zhhB 242 3.60e+01 1np7A 489 3.63e+01 a.99.1.1,c.28.1.1 80677,80678 1okgA 373 3.65e+01 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 3sdhA 146 3.65e+01 3sdhA a.1.1.2 14984 2f4nA 273 3.67e+01 1bykA 255 3.68e+01 1bykA c.93.1.1 35706 1vecA 206 3.73e+01 c.37.1.19 100575 2fqxA 318 3.73e+01 1hynP 379 3.74e+01 1hynP d.112.1.2 61408 1oc2A 348 3.76e+01 c.2.1.2 92765 1wdjA 187 3.76e+01 1rxyA 253 3.81e+01 c.56.2.1 98065 1yloA 348 3.85e+01 2ge3A 170 3.89e+01 1g55A 343 3.92e+01 1g55A c.66.1.26 34247 1d3yA 301 3.94e+01 1d3yA e.12.1.1 43252 1jysA 242 3.99e+01 c.56.2.1 77216 1ooeA 236 4.00e+01 c.2.1.2 87196 1sqsA 242 4.03e+01 c.23.5.5 98968 1g66A 207 4.06e+01 1bs9 c.69.1.30 31329 1y8qA 346 4.07e+01 1zd9A 188 4.08e+01 1yxmA 303 4.13e+01 1dzkA 157 4.18e+01 1obpA b.60.1.1 27096 2d1sA 548 4.20e+01 2gcuA 245 4.27e+01 1vr9A 213 4.31e+01 1fcdA 401 4.35e+01 1fcdA c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 2erfA 209 4.36e+01 1yvoA 172 4.37e+01 1zu4A 320 4.40e+01 1qwdA 177 4.42e+01 b.60.1.1 96471 1wa3A 205 4.44e+01 1uk8A 282 4.45e+01 c.69.1.10 107907 2av5A 120 4.45e+01 1mqiA 263 4.47e+01 c.94.1.1 91398 2fliA 220 4.50e+01 1geqA 248 4.55e+01 2tysA c.1.2.4 28589 1r6uA 437 4.56e+01 c.26.1.1 97163 1yc5A 246 4.57e+01 1kt6A 183 4.58e+01 b.60.1.1 84466 1wwzA 159 4.63e+01 1ywxA 102 4.64e+01 1l2tA 235 4.74e+01 c.37.1.12 73514 1sjiA 350 4.81e+01 1tzjA 338 4.83e+01 1rkuA 206 4.87e+01 c.108.1.11 97627 1tvfA 369 4.92e+01 b.105.1.2,e.3.1.1 107358,107359 1q4rA 112 4.94e+01 d.58.4.4 95823 1m7yA 435 4.95e+01 c.67.1.4 78761 1twfK 120 4.99e+01 2gnxA 365 5.04e+01 1s2dA 167 5.04e+01 c.23.14.1 98377 1dyr 206 5.04e+01 1aoeA c.71.1.1 34916 1b77A 228 5.05e+01 1b77A d.131.1.2,d.131.1.2 41362,41363 2beiA 170 5.11e+01 1g2rA 100 5.14e+01 1g2rA d.192.1.1 60231 1c0pA 363 5.17e+01 1an9A c.4.1.2,d.16.1.3 30647,37934 1sgwA 214 5.19e+01 c.37.1.12 105541 1i2aA 219 5.28e+01 e.24.1.1 90660 1jmsA 381 5.36e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1zndA 174 5.40e+01 1i88A 389 5.45e+01 c.95.1.2,c.95.1.2 66070,66071 1nd4A 264 5.46e+01 d.144.1.6 91815 1tqjA 230 5.48e+01 c.1.2.2 107228 1uekA 275 5.51e+01 d.14.1.5,d.58.26.5 88483,88484 1qf5A 431 5.52e+01 1adeA c.37.1.10 32212 1f08A 148 5.53e+01 1f08A d.89.1.2 59564 1cseI 71 5.53e+01 1egpA d.40.1.1 38559 1w36B 1180 5.54e+01 1ia9A 280 5.56e+01 1ia9A d.144.1.5 62113 2b7kA 200 5.60e+01 1pot 325 5.62e+01 1pot c.94.1.1 35807 1bj7 156 5.64e+01 1bj7 b.60.1.1 27113 1mp9A 198 5.65e+01 d.129.1.1,d.129.1.1 91385,91386 1mwmA 320 5.66e+01 c.55.1.1,c.55.1.1 79580,79581 2ivyA 101 5.72e+01 1y5eA 169 5.79e+01 1iuz 98 5.81e+01 1plc b.6.1.1 22861 1tljA 213 5.81e+01 d.282.1.1 107126 1sh8A 154 5.85e+01 d.38.1.5 105549 1xg8A 111 5.85e+01 1in4A 334 5.87e+01 1hqcA a.4.5.11,c.37.1.20 62597,62598 2gkeA 274 5.88e+01 2chnA 716 5.89e+01 1ohtA 215 5.91e+01 d.118.1.1 87036 2b4aA 138 6.00e+01 1k0fA 277 6.06e+01 c.92.2.2 71974 1gd1O 334 6.06e+01 1dssG c.2.1.3,d.81.1.1 29962,39877 1utcA 363 6.13e+01 a.118.1.4,b.69.6.1 99914,99915 1iu4A 331 6.22e+01 d.3.1.8 71430 2bj7A 138 6.23e+01 2gzxA 265 6.25e+01 2choA 716 6.26e+01 1zud1 251 6.27e+01 1e6uA 321 6.28e+01 1bsvA c.2.1.2 29805 1tuaA 191 6.31e+01 d.51.1.1,d.51.1.1 107321,107322 1svy 114 6.36e+01 1svy d.109.1.1 40831 1iz6A 138 6.39e+01 b.34.5.2,b.40.4.5 76976,76977 1quqB 121 6.47e+01 1quqB b.40.4.3 25305 1ec7A 446 6.58e+01 1bqg c.1.11.2,d.54.1.1 29218,38862 1o1xA 155 6.59e+01 c.121.1.1 86553 1b3aA 67 6.60e+01 1b3aA d.9.1.1 37410 1wz8A 264 6.61e+01 1uc8A 280 6.72e+01 c.30.1.6,d.142.1.7 99165,99166 1v7zA 260 6.74e+01 c.125.1.1 100488 2b8nA 429 6.76e+01 1ufwA 95 6.85e+01 d.58.7.1 99358 1auiB 169 6.85e+01 1auiB a.39.1.5 17325 2ew8A 249 6.88e+01 1on0A 158 6.88e+01 d.108.1.1 87095 1xtmA 175 6.92e+01 1xc3A 302 6.95e+01 1c8cA 64 6.96e+01 1azpA b.34.13.1 59084 1in6A 334 6.97e+01 1hqcA a.4.5.11,c.37.1.20 62601,62602 1cl1A 395 6.99e+01 1cl2A c.67.1.3 34395 1t3tA 1303 7.01e+01 a.5.10.1,c.23.16.1,d.284.1.2,d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 106381,106382,106383,106384,106385,106386,106387 1ppjB 439 7.02e+01 d.185.1.1,d.185.1.1 104254,104255 2bitX 165 7.09e+01 1wr8A 231 7.10e+01 2a1iA 146 7.11e+01 1gefA 123 7.20e+01 1gefA c.52.1.18 60465 2g7jA 124 7.21e+01 2f1fA 164 7.24e+01 1v4pA 157 7.24e+01 1rr7A 129 7.25e+01 a.4.1.14 105075 1cvrA 435 7.28e+01 1cvrA b.1.18.12,c.17.1.2 21949,31006 1r7aA 504 7.29e+01 b.71.1.1,c.1.8.1 97192,97193 1dceB 331 7.31e+01 1dceB a.102.4.3 18872 1n5nA 180 7.34e+01 d.167.1.1 85336 1rhs 296 7.35e+01 1rhs c.46.1.2,c.46.1.2 32703,32704 1ob8A 135 7.35e+01 1cydA 244 7.38e+01 1cydA c.2.1.2 29825 1oqvA 192 7.39e+01 d.24.1.2 87320 2aa4A 289 7.39e+01 1wy7A 207 7.40e+01 1no5A 114 7.43e+01 d.218.1.5 92014 1qy1A 174 7.55e+01 b.60.1.1 96568 1vd6A 224 7.63e+01 2es7A 142 7.65e+01 1e6yC 247 7.67e+01 1mroC d.58.31.1 39441 2fy7A 287 7.69e+01 2vhbA 146 7.74e+01 2vhbA a.1.1.2 15629 1wyzA 242 7.80e+01 1qtnA 164 7.86e+01 1pauA c.17.1.1 30999 1zz1A 369 7.90e+01 2aebA 322 7.93e+01 1gs5A 258 7.95e+01 c.73.1.2 70395 1i12A 160 7.96e+01 1i21A d.108.1.1 61515 1ng6A 148 8.09e+01 a.182.1.1 85670 2d69A 430 8.18e+01 1vkmA 297 8.18e+01 c.138.1.1 108670 2d00A 109 8.28e+01 1hnjA 317 8.36e+01 1hn9A c.95.1.2,c.95.1.2 35969,35970 1b56 135 8.40e+01 1hmt b.60.1.2 27183 2cygA 312 8.42e+01 2ez3A 302 8.42e+01 1mml 265 8.43e+01 1mml e.8.1.2 43015 2fymA 431 8.44e+01 1t8tA 271 8.46e+01 c.37.1.5 106685 1xo0A 324 8.52e+01 1eceA 358 8.57e+01 1eceA c.1.8.3 28813 1w5fA 353 8.59e+01 1mk4A 157 8.66e+01 d.108.1.1 84979 1nkqA 259 8.67e+01 d.177.1.1 103862 1d2mA 665 8.74e+01 1d2mA c.37.1.19,c.37.1.19 32417,32418 1b5pA 385 8.74e+01 c.67.1.1 90403 2nacA 393 8.78e+01 2nadA c.2.1.4,c.23.12.1 30088,31348 1iukA 140 8.79e+01 c.2.1.8 83712 1qqfA 277 8.83e+01 1c3d a.102.4.4 18875 1ev7A 317 8.84e+01 1ev7B c.52.1.9 33315 1bco 327 8.85e+01 1bco b.48.1.1,c.55.3.3 26431,33676 1jy1A 464 8.87e+01 d.136.1.3,d.136.1.3 67438,67439 1pieA 419 8.87e+01 d.14.1.5,d.58.26.7 94706,94707 1w2fA 276 8.90e+01 d.143.1.3 109125 1guzA 310 8.91e+01 c.2.1.5,d.162.1.1 65586,65587 1vbkA 307 8.97e+01 1xo5A 183 9.00e+01