# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1a6q 382 2.69e-01 1a6q a.159.1.1,d.219.1.1 75801,75802 1wqaA 455 2.00e+00 1wdtA 665 3.20e+00 1vkhA 273 3.25e+00 c.69.1.32 108662 2f94F 350 3.41e+00 1wvfA 520 4.16e+00 1xc3A 302 9.04e+00 1yjsA 419 9.80e+00 1xi3A 215 1.02e+01 c.1.3.1 109601 1q77A 138 1.25e+01 c.26.2.4 96023 1kl1A 419 1.32e+01 c.67.1.4 72663 1tkkA 366 1.49e+01 c.1.11.2,d.54.1.1 107089,107090 1vlbA 907 1.68e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 2a7mA 250 1.90e+01 1wqwA 235 2.17e+01 1b8oA 284 2.61e+01 1b8oA c.56.2.1 33762 1fcyA 236 2.66e+01 2lbd a.123.1.1 19282 1yeyA 444 2.77e+01 1y1pA 342 2.83e+01 1rp4A 389 2.90e+01 a.227.1.1 105027 1ubkS 267 2.91e+01 e.19.1.1 88423 1wuiS 267 3.10e+01 1l2tA 235 3.14e+01 c.37.1.12 73514 1w44A 331 3.25e+01 2c46A 241 3.30e+01 1e3dA 266 3.32e+01 2frvA e.19.1.1 59188 1pot 325 3.60e+01 1pot c.94.1.1 35807 1jnrA 643 3.72e+01 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 1uptB 60 3.74e+01 a.193.1.1 99768 1nvmB 312 3.86e+01 c.2.1.3,d.81.1.1 86251,86252 1t2bA 397 3.88e+01 1ne7A 289 4.04e+01 c.124.1.1 91833 2fjbA 643 4.42e+01 1mjhA 162 4.44e+01 1mjhA c.26.2.4 31639 1kk1A 410 4.64e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1n40A 396 4.81e+01 a.104.1.1 79977 1epxA 370 4.85e+01 1fbaA c.1.10.1 29150 1kbvA 327 4.87e+01 b.6.1.3,b.6.1.3 68395,68396 1bqk 124 5.16e+01 1bqk b.6.1.1 22889 2h6dA 276 5.19e+01 1z8oA 404 5.24e+01 1pvvA 315 5.27e+01 c.78.1.1,c.78.1.1 95190,95191 2cwxA 430 5.33e+01 1fseA 74 5.35e+01 1fseA a.4.6.2 60000 2faoA 309 5.45e+01 2bitX 165 5.56e+01 1kicA 339 5.63e+01 c.70.1.1 72510 1auiB 169 5.73e+01 1auiB a.39.1.5 17325 1y2mA 716 6.16e+01 1iq8A 582 6.22e+01 c.1.20.1,b.122.1.1,d.17.6.1 71270,83074,83075 1wycA 392 6.23e+01 2d69A 430 6.34e+01 2cqsA 842 6.45e+01 1ztdA 133 6.68e+01 1nd4A 264 6.87e+01 d.144.1.6 91815 1r9cA 139 7.22e+01 d.32.1.2 97255 1ie9A 259 7.32e+01 1db1A a.123.1.1 62318 1z7xW 461 7.36e+01 1yovA 537 7.45e+01 1n67A 359 7.68e+01 b.2.3.4,b.2.3.4 85354,85355 1ov2A 99 7.83e+01 a.13.1.1 93580 1yzvA 204 7.87e+01 1e9rA 437 7.93e+01 c.37.1.11 64827 1h05A 146 7.95e+01 c.23.13.1 76433 1wmaA 276 8.00e+01 1ju2A 536 8.11e+01 c.3.1.2,d.16.1.1 77169,77170 1p4xA 250 8.12e+01 a.4.5.28,a.4.5.28 87784,87785 5csmA 256 8.25e+01 5csmA a.130.1.2 19494 1gvnA 90 8.28e+01 a.8.2.1 76353 1vr5A 547 8.36e+01 1ia9A 280 8.46e+01 1ia9A d.144.1.5 62113 1aocA 175 8.50e+01 1aocA g.17.1.5 44817 1v6tA 255 8.57e+01 2fu2A 102 8.88e+01