# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1wqaA 455 3.48e-01 1pvvA 315 9.71e-01 c.78.1.1,c.78.1.1 95190,95191 1wdtA 665 1.18e+00 1nvmB 312 3.01e+00 c.2.1.3,d.81.1.1 86251,86252 1k2fA 190 3.12e+00 b.8.1.2 68054 1a6q 382 3.19e+00 1a6q a.159.1.1,d.219.1.1 75801,75802 1ju2A 536 3.19e+00 c.3.1.2,d.16.1.1 77169,77170 1hbq 183 4.71e+00 1aqb b.60.1.1 27078 1kt6A 183 5.83e+00 b.60.1.1 84466 1hu4A 288 6.25e+00 1hu4A 1n5dA 288 6.41e+00 c.2.1.2 80030 1aqb 183 6.76e+00 1aqb b.60.1.1 27084 1w44A 331 6.91e+00 1bazA 53 7.82e+00 1bazA a.43.1.1 17421 1y2mA 716 9.59e+00 1othA 321 9.67e+00 1othA c.78.1.1,c.78.1.1 35260,35261 1q77A 138 9.75e+00 c.26.2.4 96023 1ws6A 171 1.00e+01 1i05A 180 1.01e+01 1mup b.60.1.1 27130 1qy1A 174 1.04e+01 b.60.1.1 96568 1zndA 174 1.08e+01 1ea9C 583 1.13e+01 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 1i06A 180 1.14e+01 1mup b.60.1.1 27131 1odkA 235 1.18e+01 c.56.2.1 86863 1t6jA 714 1.27e+01 2fu2A 102 1.28e+01 2eueA 279 1.29e+01 1vjeA 166 1.32e+01 d.185.1.2 100807 1fsz 372 1.34e+01 1fsz c.32.1.1,d.79.2.1 31750,39802 2ah6A 208 1.35e+01 1avqA 228 1.37e+01 1avqA c.52.1.13 33326 1jv4A 162 1.38e+01 b.60.1.1 67343 1ng4A 390 1.38e+01 c.3.1.2,d.16.1.3 85666,85667 1yv5A 374 1.38e+01 1vd5A 377 1.38e+01 a.102.1.7 108518 1l1lA 739 1.39e+01 c.7.1.4 73470 1ztdA 133 1.40e+01 1innA 166 1.40e+01 1j98A d.185.1.2 62608 1wuiS 267 1.41e+01 1uby 367 1.46e+01 1uby a.128.1.1 19435 1ryiA 382 1.48e+01 2a7oA 112 1.48e+01 2ivyA 101 1.52e+01 1jnrA 643 1.58e+01 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 1ubkS 267 1.60e+01 e.19.1.1 88423 1lngA 87 1.61e+01 d.201.1.1 74045 1h2rS 267 1.64e+01 2frvA e.19.1.1 43310 2gj8A 172 1.66e+01 1phk 298 1.70e+01 1cdkA d.144.1.7 41635 1sj1A 66 1.70e+01 d.58.1.4 105595 1ukuA 102 1.73e+01 d.58.5.2 99533 1yq7A 374 1.77e+01 1d3yA 301 1.85e+01 1d3yA e.12.1.1 43252 2f94F 350 1.87e+01 1dekA 241 1.88e+01 1dekA c.37.1.1 31842 1wmaA 276 1.89e+01 1jx2B 315 2.04e+01 c.37.1.8 67404 2al1A 436 2.07e+01 1fcyA 236 2.07e+01 2lbd a.123.1.1 19282 2cpgA 45 2.07e+01 2cpgA a.43.1.3 17455 2fjbA 643 2.11e+01 1i9sA 210 2.14e+01 1i9sA c.45.1.1 62099 1iq8A 582 2.20e+01 c.1.20.1,b.122.1.1,d.17.6.1 71270,83074,83075 1mup 166 2.23e+01 1mup b.60.1.1 27133 1bqk 124 2.23e+01 1bqk b.6.1.1 22889 2fv1A 377 2.24e+01 1xc3A 302 2.27e+01 1f35A 162 2.28e+01 1f35A b.94.1.1 59628 1v74B 87 2.29e+01 a.24.20.1 100443 1kqqA 139 2.36e+01 a.4.3.1 72885 2dc4A 165 2.39e+01 1s0uA 408 2.41e+01 b.43.3.1,b.44.1.1,c.37.1.8 98302,98303,98304 2al2A 436 2.47e+01 2c46A 241 2.52e+01 1vq3A 94 2.56e+01 4enl 436 2.57e+01 4enl c.1.11.1,d.54.1.1 29202,38846 2a7mA 250 2.57e+01 2cwxA 430 2.60e+01 1xhdA 173 2.61e+01 1yemA 179 2.62e+01 1wozA 177 2.71e+01 1yh6A 179 2.87e+01 2a6sA 84 2.94e+01 2a67A 167 2.95e+01 1c0pA 363 2.96e+01 1an9A c.4.1.2,d.16.1.3 30647,37934 2bjcA 62 3.05e+01 1p0hA 318 3.08e+01 d.108.1.1 93866 1vbiA 344 3.10e+01 1oneA 436 3.12e+01 4enl c.1.11.1,d.54.1.1 29200,38844 1ykhB 132 3.22e+01 2bj7A 138 3.23e+01 1vkcA 158 3.25e+01 1ru3A 732 3.27e+01 e.26.1.3 97835 1yj7A 171 3.32e+01 1ynfA 458 3.36e+01 2gsaA 432 3.39e+01 2gsaA c.67.1.4 34446 1hgxA 183 3.39e+01 1tc1A c.61.1.1 34027 2gsq 202 3.40e+01 1pd21 a.45.1.1,c.47.1.5 17715,33009 1v7pC 200 3.41e+01 c.62.1.1 108408 1b8oA 284 3.44e+01 1b8oA c.56.2.1 33762 2ajrA 331 3.45e+01 1wnlA 235 3.49e+01 2bjiA 277 3.51e+01 2cyeA 133 3.56e+01 2bw3A 534 3.59e+01 2cbiA 594 3.62e+01 2bitX 165 3.70e+01 1ri7A 171 3.75e+01 a.4.5.32,d.58.4.2 97504,97505 1pfbA 55 3.77e+01 b.34.13.2 94655 1w1wA 430 3.84e+01 1vkhA 273 3.89e+01 c.69.1.32 108662 1fi4A 416 3.93e+01 1fi4A d.14.1.5,d.58.26.2 59847,59848 2di4A 238 3.94e+01 2a72A 146 3.96e+01 2arhA 203 3.97e+01 1j0hA 588 4.21e+01 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 2h6dA 276 4.25e+01 1yseA 141 4.26e+01 1bco 327 4.30e+01 1bco b.48.1.1,c.55.3.3 26431,33676 1z3eB 73 4.30e+01 2bk9A 153 4.33e+01 1yovA 537 4.34e+01 1pt6A 213 4.36e+01 c.62.1.1 95091 7odcA 424 4.40e+01 7odcA b.49.2.3,c.1.6.1 26488,28650 1vp8A 201 4.41e+01 2d8dA 90 4.42e+01 2faoA 309 4.46e+01 1wvqA 167 4.46e+01 2bx2L 517 4.47e+01 2b99A 156 4.50e+01 2cunA 410 4.54e+01 1eceA 358 4.60e+01 1eceA c.1.8.3 28813 1bebA 162 4.61e+01 1bebA b.60.1.1 27115 1auiB 169 4.62e+01 1auiB a.39.1.5 17325 2aa1A 144 4.62e+01 1p4xA 250 4.66e+01 a.4.5.28,a.4.5.28 87784,87785 2c27A 315 4.71e+01 1cg5A 141 4.75e+01 1abwA a.1.1.2 15406 1q0vA 81 4.78e+01 j.105.1.1 95514 1zbsA 291 4.82e+01 1a0i 348 4.91e+01 1a0i b.40.4.6,d.142.2.1 25363,41577 1w18A 493 4.96e+01 1vehA 92 4.96e+01 1c25 161 4.99e+01 1c25 c.46.1.1 32698 1tadA 324 5.01e+01 1cipA a.66.1.1,c.37.1.8 18194,32077 2spl 154 5.08e+01 1a6m a.1.1.2 15047 1wi1A 126 5.16e+01 1t3cA 421 5.21e+01 d.92.1.7 106343 2a25A 193 5.29e+01 2mgg 154 5.30e+01 1a6m a.1.1.2 15069 1e3dA 266 5.34e+01 2frvA e.19.1.1 59188 1gen 218 5.44e+01 1gen b.66.1.1 27536 1tag 324 5.47e+01 1cipA a.66.1.1,c.37.1.8 18197,32080 1mlo 154 5.64e+01 1a6m a.1.1.2 15085 1mlg 154 5.66e+01 1a6m a.1.1.2 15104 1gw0A 559 5.69e+01 b.6.1.3,b.6.1.3,b.6.1.3 70623,70624,70625 103m 154 5.80e+01 1a6m a.1.1.2 15124 2bo3A 94 5.94e+01 1ycsB 239 5.95e+01 1ycsB d.211.1.1,b.34.2.1 19155,24553 1nar 290 5.95e+01 1nar c.1.8.5 28988 1y6hA 177 6.02e+01 1yzvA 204 6.05e+01 1zq1C 633 6.08e+01 1mod 154 6.14e+01 1a6m a.1.1.2 15107 1fa0A 537 6.16e+01 1fa0B d.58.16.1,a.160.1.1,d.218.1.3 39335,75837,75838 1i3dA 146 6.20e+01 a.1.1.2 61587 1mym 154 6.22e+01 1a6m a.1.1.2 15054 1lf7A 182 6.23e+01 b.60.1.1 73878 2apoA 357 6.23e+01 1jayA 212 6.26e+01 c.2.1.6 66478 1aisB 200 6.28e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 2f05A 105 6.31e+01 1voqa 90 6.32e+01 1jzuA 157 6.34e+01 b.60.1.1 84271 1g1eB 89 6.35e+01 1g1eB a.59.1.1 17931 2fswA 107 6.37e+01 2d69A 430 6.41e+01 1e9rA 437 6.43e+01 c.37.1.11 64827 1dywA 173 6.44e+01 2cpl b.62.1.1 27505 2mgb 154 6.55e+01 1a6m a.1.1.2 15102 1qc5A 192 6.57e+01 1aoxA c.62.1.1 34147 1mll 154 6.62e+01 1a6m a.1.1.2 15057 1it2A 146 6.64e+01 a.1.1.2 66365 1xi3A 215 6.68e+01 c.1.3.1 109601 2b4yA 271 6.78e+01 1bjt 793 6.79e+01 1bjt e.11.1.1 43249 1o51A 114 6.83e+01 d.58.5.4 92480 2gb7A 305 6.83e+01 1rfmA 344 6.86e+01 c.122.1.1 97385 1w8iA 156 6.95e+01 1q67A 231 6.98e+01 b.55.1.7 95960 1mr3F 181 7.05e+01 c.37.1.8 79422 1k3xA 262 7.07e+01 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 2aeeA 211 7.07e+01 1i5gA 144 7.16e+01 1ewxA c.47.1.10 61784 1aocA 175 7.16e+01 1aocA g.17.1.5 44817 1spgA 144 7.16e+01 1abwA a.1.1.2 15409 1babB 146 7.20e+01 1abwA a.1.1.2 15414 3sdhA 146 7.35e+01 3sdhA a.1.1.2 14984 1i1dA 161 7.38e+01 1i21A d.108.1.1 61526 1m1nA 491 7.40e+01 c.92.2.3 78417 1ne8A 117 7.44e+01 b.34.6.2 80424 1l2tA 235 7.48e+01 c.37.1.12 73514 1pru 56 7.51e+01 1pru a.35.1.5 17104 1zljA 78 7.52e+01 1ws0A 156 7.61e+01 1xwyA 264 7.64e+01 2ilk 160 7.65e+01 2ilk a.26.1.3 16885 1xhbA 472 7.68e+01 2b4aA 138 7.68e+01 1gkpA 458 7.85e+01 b.92.1.3,c.1.9.6 70231,70232 1a6m 151 7.94e+01 1a6m a.1.1.2 15018 1xyzA 347 7.98e+01 1taxA c.1.8.3 28804 2fu0A 160 8.00e+01 1ghhA 81 8.00e+01 1ghhA d.57.1.1 38940 1dzkA 157 8.02e+01 1obpA b.60.1.1 27096 1lj2A 110 8.14e+01 h.1.13.2 73926 1zpwX 90 8.14e+01 1x42A 232 8.18e+01 1zoyB 252 8.21e+01 1n9lA 109 8.22e+01 d.110.3.6 85468 1rwyA 109 8.29e+01 a.39.1.4 98002 1bj7 156 8.35e+01 1bj7 b.60.1.1 27113 1y1pA 342 8.37e+01 1aquA 297 8.40e+01 1aquA c.37.1.5 31942 1f0yA 302 8.44e+01 2hdhA a.100.1.3,c.2.1.6 18793,30197 1irdB 146 8.50e+01 a.1.1.2 66287 1imbA 277 8.59e+01 1imbA e.7.1.1 42957 1s4kA 120 8.62e+01 a.35.1.6 105254 1wh5A 80 8.63e+01 1uzxA 169 8.66e+01 d.20.1.2 100238 1oc2A 348 8.67e+01 c.2.1.2 92765 1fjgB 256 8.67e+01 1fjfB c.23.15.1 31400 1wycA 392 8.73e+01 1em8A 147 8.80e+01 c.128.1.1 90457 1vp4A 425 8.89e+01 1wj9A 211 8.98e+01 1v30A 124 8.98e+01