# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1wqaA 455 3.07e-01 1vp4A 425 7.63e-01 2gj8A 172 9.34e-01 1yb0A 159 1.08e+00 1lc5A 364 1.49e+00 c.67.1.1 73827 1ymqA 261 1.51e+00 1amy 403 1.53e+00 1jdc b.71.1.1,c.1.8.1 27799,28786 1xahA 354 1.81e+00 1avaA 403 2.29e+00 1jdc b.71.1.1,c.1.8.1 27797,28784 4enl 436 2.40e+00 4enl c.1.11.1,d.54.1.1 29202,38846 2al2A 436 2.50e+00 1oneA 436 2.75e+00 4enl c.1.11.1,d.54.1.1 29200,38844 2al1A 436 2.98e+00 2akzA 439 3.34e+00 1lvwA 295 3.44e+00 c.68.1.6 84723 1te6A 439 4.11e+00 c.1.11.1,d.54.1.1 106797,106798 1dar 691 4.23e+00 1dar b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1 25707,32142,37547,39300 1vggA 161 4.28e+00 1phk 298 4.53e+00 1cdkA d.144.1.7 41635 1vl6A 388 4.55e+00 c.2.1.7,c.58.1.3 108724,108725 2c1lA 358 4.91e+00 1w77A 228 5.34e+00 1r5tA 142 5.36e+00 c.97.1.1 104812 1eg9A 449 5.55e+00 1ndoA b.33.1.2,d.129.3.3 24443,41322 1o7nA 449 5.55e+00 b.33.1.2,d.129.3.3 81162,81163 1yc5A 246 5.61e+00 1e9rA 437 6.06e+00 c.37.1.11 64827 1ht6A 405 6.06e+00 b.71.1.1,c.1.8.1 83629,83630 2g5cA 281 6.19e+00 2fckA 181 6.33e+00 1bqk 124 6.36e+00 1bqk b.6.1.1 22889 1fezA 256 6.52e+00 1fezA c.108.1.3 43343 1ryiA 382 6.68e+00 1b8oA 284 6.75e+00 1b8oA c.56.2.1 33762 1ng4A 390 7.21e+00 c.3.1.2,d.16.1.3 85666,85667 1k8rB 110 7.23e+00 d.15.1.5 72180 1fo8A 343 7.24e+00 1foaA c.68.1.10 59927 2a7mA 250 7.93e+00 1a4yA 460 8.43e+00 1a4yA c.10.1.1 30852 2dbbA 151 8.77e+00 1fsz 372 9.46e+00 1fsz c.32.1.1,d.79.2.1 31750,39802 1tcvA 287 9.76e+00 1f2tB 148 1.01e+01 1f2tB 1aszB 490 1.02e+01 1b8aA b.40.4.1,d.104.1.1 25241,40762 1xbsA 149 1.09e+01 1u7lA 392 1.13e+01 1bo1A 416 1.13e+01 1bo1A d.143.1.2 41591 1ri7A 171 1.14e+01 a.4.5.32,d.58.4.2 97504,97505 1kepA 348 1.15e+01 c.2.1.2 68536 1d8wA 426 1.20e+01 1de5A c.1.15.2 29394 1qo0D 196 1.27e+01 1qo0D c.23.1.3 31125 1r5lA 262 1.29e+01 a.5.3.1,c.13.1.1 97099,97100 1oc2A 348 1.30e+01 c.2.1.2 92765 1wi1A 126 1.30e+01 1uirA 314 1.32e+01 c.66.1.17 99429 2ffuA 501 1.42e+01 1wstA 417 1.44e+01 1d3yA 301 1.54e+01 1d3yA e.12.1.1 43252 1pzxA 289 1.60e+01 c.119.1.1 95484 2eueA 279 1.65e+01 1z7xW 461 1.71e+01 1w1wA 430 1.77e+01 1wn5A 130 1.87e+01 1g55A 343 1.94e+01 1g55A c.66.1.26 34247 2gzaA 361 1.96e+01 1fcyA 236 1.99e+01 2lbd a.123.1.1 19282 1rdfA 267 2.00e+01 c.108.1.3 104884 1wduA 245 2.08e+01 d.151.1.1 109286 1ve0A 134 2.11e+01 1jykA 254 2.12e+01 c.68.1.13 67458 1qysA 106 2.21e+01 k.41.1.1 96603 1fa0A 537 2.28e+01 1fa0B d.58.16.1,a.160.1.1,d.218.1.3 39335,75837,75838 2ajrA 331 2.34e+01 1tfr 305 2.50e+01 1tfr a.60.7.1,c.120.1.2 18081,33351 1wdtA 665 2.52e+01 2bexA 460 2.60e+01 1pdz 434 2.70e+01 4enl c.1.11.1,d.54.1.1 29215,38859 1oz9A 150 2.71e+01 d.92.1.15 93808 2faoA 309 2.76e+01 1xwyA 264 2.86e+01 2fuvA 549 2.95e+01 1swvA 267 2.97e+01 1nx8A 273 2.97e+01 b.82.2.8 86374 1fzyA 149 3.01e+01 d.20.1.1 65072 1mp9A 198 3.11e+01 d.129.1.1,d.129.1.1 91385,91386 1zz1A 369 3.17e+01 1yp2A 451 3.21e+01 1pc6A 146 3.24e+01 d.262.1.1 94430 1wqwA 235 3.31e+01 1ursA 402 3.49e+01 c.94.1.1 99833 1szqA 483 3.49e+01 e.44.1.1 99045 1mqiA 263 3.58e+01 c.94.1.1 91398 1b7gO 340 3.78e+01 1b7gO c.2.1.3,d.81.1.1 29992,39907 1tvfA 369 3.82e+01 b.105.1.2,e.3.1.1 107358,107359 1wtaA 275 3.84e+01 1vkjA 285 3.88e+01 c.37.1.5 108666 1wnlA 235 3.93e+01 1pbgA 468 3.98e+01 1e70M c.1.8.4 28946 1vheA 373 3.98e+01 b.49.3.1,c.56.5.4 100669,100670 1wvqA 167 4.18e+01 2av5A 120 4.24e+01 1bco 327 4.31e+01 1bco b.48.1.1,c.55.3.3 26431,33676 2av4A 162 4.32e+01 1pvvA 315 4.36e+01 c.78.1.1,c.78.1.1 95190,95191 1ftkA 279 4.37e+01 1gr2A c.94.1.1 35819 2ab5A 269 4.40e+01 1kdoA 227 4.42e+01 c.37.1.1 68478 1nxiA 132 4.46e+01 d.58.47.1 86381 1euvB 86 4.48e+01 1a5r d.15.1.1 37598 2bkrA 212 4.50e+01 1lci 550 4.58e+01 1lci e.23.1.1 43349 2a5dA 175 4.66e+01 1yghA 164 4.69e+01 1yghA d.108.1.1 40802 1ywxA 102 4.72e+01 1p8kZ 254 4.78e+01 d.95.2.1,d.95.2.1 94361,94362 1hurA 180 4.81e+01 1hurA c.37.1.8 32052 1g3qA 237 4.83e+01 1hyqA c.37.1.10 60237 1htqA 477 4.88e+01 d.15.9.1,d.128.1.1 71035,71036 1em8A 147 4.89e+01 c.128.1.1 90457 1u2wA 122 4.97e+01 1iyxA 432 5.00e+01 c.1.11.1,d.54.1.1 83815,83816 1k2fA 190 5.01e+01 b.8.1.2 68054 1ltoA 245 5.01e+01 b.47.1.2 84707 3pmgA 561 5.11e+01 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1xewY 172 5.14e+01 1fi4A 416 5.27e+01 1fi4A d.14.1.5,d.58.26.2 59847,59848 1fxoA 293 5.29e+01 1g0rA c.68.1.6 34524 2bkqA 212 5.30e+01 1h1nA 305 5.31e+01 c.1.8.3 70855 1q1aA 289 5.38e+01 c.31.1.5 95561 1pcfA 66 5.40e+01 1pcfA d.18.1.1 38142 2choA 716 5.43e+01 1rfmA 344 5.45e+01 c.122.1.1 97385 1okgA 373 5.52e+01 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2chnA 716 5.57e+01 2gkeA 274 5.64e+01 1s2dA 167 5.65e+01 c.23.14.1 98377 1q9uA 130 5.68e+01 d.129.7.1 96314 2gu2A 312 5.70e+01 2bo4A 397 5.87e+01 2f9nA 245 5.93e+01 1o3yA 166 5.96e+01 c.37.1.8 86618 2ge3A 170 6.05e+01 1gefA 123 6.14e+01 1gefA c.52.1.18 60465 2ew0A 192 6.16e+01 1r7aA 504 6.19e+01 b.71.1.1,c.1.8.1 97192,97193 1bmtA 246 6.21e+01 1bmtA a.46.1.1,c.23.6.1 17757,31235 2an9A 207 6.40e+01 1yrgA 385 6.44e+01 1yrgA c.10.1.2 30854 2atxA 194 6.50e+01 2a0jA 149 6.50e+01 1jmsA 381 6.65e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 2f5gA 133 6.65e+01 2cw5A 255 6.71e+01 1cvrA 435 6.77e+01 1cvrA b.1.18.12,c.17.1.2 21949,31006 1y5oA 115 6.85e+01 1oqvA 192 6.86e+01 d.24.1.2 87320 1i1dA 161 6.87e+01 1i21A d.108.1.1 61526 1o4sA 389 6.95e+01 c.67.1.1 86620 1wjuA 100 7.04e+01 1rqlA 267 7.05e+01 c.108.1.3 97750 1slqA 278 7.10e+01 f.47.1.1 105719 1yj7A 171 7.18e+01 1y9aA 360 7.23e+01 2cviA 83 7.30e+01 1t3tA 1303 7.35e+01 a.5.10.1,c.23.16.1,d.284.1.2,d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 106381,106382,106383,106384,106385,106386,106387 1bi5A 389 7.37e+01 1bi5A c.95.1.2,c.95.1.2 35985,35986 1efpB 252 7.41e+01 1efvB c.26.2.3 31636 1h5rA 293 7.42e+01 c.68.1.6 65623 1zpvA 91 7.54e+01 1m65A 245 7.58e+01 c.6.3.1 84847 1np7A 489 7.62e+01 a.99.1.1,c.28.1.1 80677,80678 1egaA 301 7.69e+01 1egaA c.37.1.8,d.52.3.1 32150,38836 1l0gA 358 7.71e+01 e.3.1.1 73400 1s99A 200 7.84e+01 3tmkA 216 7.85e+01 3tmkA c.37.1.1 31920 1a0i 348 7.85e+01 1a0i b.40.4.6,d.142.2.1 25363,41577 2b4yA 271 7.88e+01 1i12A 160 7.89e+01 1i21A d.108.1.1 61515 1dqnA 230 7.90e+01 1dqnA c.61.1.1 34067 2bvcA 486 7.92e+01 1ko6A 187 8.25e+01 b.119.1.1 77471 1rypA 243 8.26e+01 1pmaA d.153.1.4 41932 1hbq 183 8.26e+01 1aqb b.60.1.1 27078 1bdfA 235 8.33e+01 1bdfA d.74.3.1,d.181.1.1 39727,42602 1o0uA 429 8.34e+01 c.118.1.1 80743 1i88A 389 8.37e+01 c.95.1.2,c.95.1.2 66070,66071 2ffyA 358 8.46e+01 1qwgA 251 8.49e+01 c.1.27.1 96473 1sviA 195 8.58e+01 c.37.1.8 106048 2exrA 524 8.59e+01 2ez6A 221 8.61e+01 1fgxA 288 8.61e+01 1fgxA c.68.1.2 34508 1rwzA 245 8.63e+01 d.131.1.2,d.131.1.2 98005,98006 1kt6A 183 8.72e+01 b.60.1.1 84466 2f9sA 151 8.72e+01 1z4rA 168 8.76e+01 1xg8A 111 8.76e+01 1vi4A 174 8.78e+01 c.8.7.1 100731 2aebA 322 8.78e+01 2fymA 431 8.84e+01