# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1wqaA 455 2.10e-01 2dbbA 151 1.79e+00 1ri7A 171 2.05e+00 a.4.5.32,d.58.4.2 97504,97505 1wduA 245 2.09e+00 d.151.1.1 109286 2g5cA 281 2.77e+00 1oneA 436 3.42e+00 4enl c.1.11.1,d.54.1.1 29200,38844 2al2A 436 3.43e+00 2al1A 436 3.55e+00 1jmtA 104 3.81e+00 d.58.7.3 63180 1vl6A 388 3.82e+00 c.2.1.7,c.58.1.3 108724,108725 4enl 436 4.53e+00 4enl c.1.11.1,d.54.1.1 29202,38846 1lvwA 295 4.84e+00 c.68.1.6 84723 2oneA 436 5.49e+00 4enl c.1.11.1,d.54.1.1 29203,38847 2lbd 267 5.75e+00 2lbd a.123.1.1 19287 1fcyA 236 6.03e+00 2lbd a.123.1.1 19282 4lbd 267 6.50e+00 2lbd a.123.1.1 19289 2ucz 165 6.54e+00 1u9aA d.20.1.1 38330 1st9A 143 6.64e+00 c.47.1.10 98987 1pvvA 315 7.19e+00 c.78.1.1,c.78.1.1 95190,95191 1yb0A 159 7.42e+00 1x7oA 287 7.92e+00 2f9sA 151 7.92e+00 1w1wA 430 8.29e+00 1bwsA 321 8.56e+00 1bsvA c.2.1.2 29812 1i35A 95 8.95e+00 d.15.1.5 66017 1a1s 314 9.17e+00 1othA c.78.1.1,c.78.1.1 35258,35259 1ymqA 261 9.46e+00 1autL 114 1.01e+01 1hcgB g.3.11.1,g.3.11.1 44244,44245 1ooeA 236 1.07e+01 c.2.1.2 87196 1qdlB 195 1.15e+01 1qdlB c.23.16.1 31437 2u1a 88 1.20e+01 2u1a d.58.7.1 39164 1h1nA 305 1.31e+01 c.1.8.3 70855 1av6A 289 1.32e+01 3mag c.66.1.25 34218 2akzA 439 1.39e+01 1xc3A 302 1.42e+01 1fi4A 416 1.46e+01 1fi4A d.14.1.5,d.58.26.2 59847,59848 1p8kZ 254 1.55e+01 d.95.2.1,d.95.2.1 94361,94362 1te6A 439 1.57e+01 c.1.11.1,d.54.1.1 106797,106798 1phk 298 1.58e+01 1cdkA d.144.1.7 41635 1o69A 394 1.60e+01 c.67.1.4 92560 1rgyA 360 1.64e+01 e.3.1.1 97456 2bcoA 350 1.80e+01 1u7lA 392 1.89e+01 1odkA 235 1.90e+01 c.56.2.1 86863 1ir6A 424 2.04e+01 c.107.1.2 71342 1d7kA 421 2.05e+01 7odcA b.49.2.3,c.1.6.1 26486,28648 1v60A 123 2.17e+01 1ryiA 382 2.18e+01 3mag 307 2.23e+01 3mag c.66.1.25 34205 1ng4A 390 2.27e+01 c.3.1.2,d.16.1.3 85666,85667 1pzxA 289 2.29e+01 c.119.1.1 95484 1gefA 123 2.33e+01 1gefA c.52.1.18 60465 2c1cA 312 2.38e+01 1vaoA 560 2.38e+01 1qltA d.58.32.1,d.145.1.1 39461,41724 1bqg 451 2.46e+01 1bqg c.1.11.2,d.54.1.1 29217,38861 1oz9A 150 2.59e+01 d.92.1.15 93808 1j1lA 290 2.60e+01 b.82.1.12 90766 1yc5A 246 2.63e+01 1w1kA 560 2.69e+01 d.58.32.1,d.145.1.1 109059,109060 1g0rA 293 2.70e+01 1g0rA c.68.1.6 34532 2dlbA 80 2.77e+01 1aoxA 203 2.85e+01 1aoxA c.62.1.1 34151 1zsyA 357 2.88e+01 1fxoA 293 2.88e+01 1g0rA c.68.1.6 34524 1a9s 289 2.91e+01 1b8oA c.56.2.1 33768 1pbn 289 3.00e+01 1b8oA c.56.2.1 33771 3pnp 289 3.09e+01 1b8oA c.56.2.1 33763 1e69B 322 3.10e+01 1e69B c.37.1.12 32377 1f2tB 148 3.14e+01 1f2tB 1lngA 87 3.18e+01 d.201.1.1 74045 7odcA 424 3.19e+01 7odcA b.49.2.3,c.1.6.1 26488,28650 1y6zA 263 3.22e+01 1bqk 124 3.23e+01 1bqk b.6.1.1 22889 1gfsA 321 3.30e+01 c.2.1.2 29811 1ipiA 123 3.32e+01 c.52.1.18 66255 1kblA 873 3.38e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1wi1A 126 3.47e+01 1vpt 348 3.48e+01 3mag c.66.1.25 34207 1bsvA 321 3.52e+01 1bsvA c.2.1.2 29809 1a9r 282 3.54e+01 1b8oA c.56.2.1 33767 1ionA 243 3.59e+01 c.37.1.10 62633 2ga9A 297 3.64e+01 2a5dA 175 3.88e+01 1uirA 314 3.93e+01 c.66.1.17 99429 1un8A 552 3.95e+01 c.119.1.2,a.208.1.1 103806,99661 1b7gO 340 4.00e+01 1b7gO c.2.1.3,d.81.1.1 29992,39907 1v39 322 4.03e+01 3mag c.66.1.25 34206 1vp9 322 4.03e+01 3mag c.66.1.25 34210 1jj2L 194 4.04e+01 1ffkI d.12.1.2 63097 1vkhA 273 4.07e+01 c.69.1.32 108662 1fsz 372 4.08e+01 1fsz c.32.1.1,d.79.2.1 31750,39802 2f5gA 133 4.10e+01 1e8gA 560 4.21e+01 1qltA d.58.32.1,d.145.1.1 39455,41718 1g3qA 237 4.29e+01 1hyqA c.37.1.10 60237 1a9t 284 4.30e+01 1b8oA c.56.2.1 33765 1e7rA 321 4.36e+01 1bsvA c.2.1.2 29808 1vheA 373 4.44e+01 b.49.3.1,c.56.5.4 100669,100670 1fo8A 343 4.47e+01 1foaA c.68.1.10 59927 2bkqA 212 4.47e+01 2fckA 181 4.48e+01 1fr1A 361 4.49e+01 1gceA e.3.1.1 42734 1em8A 147 4.56e+01 c.128.1.1 90457 1fo9A 348 4.58e+01 1foaA c.68.1.10 59928 1efuB 282 4.67e+01 1efuB d.43.1.1,a.5.2.2,d.43.1.1 38677,58975,58976 1j5yA 187 4.68e+01 a.4.5.1,d.94.2.1 71592,71593 1jdfA 447 4.74e+01 c.1.11.2,d.54.1.1 62897,62898 1df3A 162 4.75e+01 1mup b.60.1.1 27134 1vggA 161 4.85e+01 1foaA 348 4.92e+01 1foaA c.68.1.10 59929 1sdjA 310 5.00e+01 d.21.1.2,d.21.1.2 98807,98808 1icxA 155 5.17e+01 d.129.3.1 71191 1kqfB 294 5.18e+01 d.58.1.5,f.23.22.1 75900,75901 1yp2A 451 5.21e+01 1b8oA 284 5.39e+01 1b8oA c.56.2.1 33762 1qltA 560 5.44e+01 1qltA d.58.32.1,d.145.1.1 39457,41720 2bj7A 138 5.50e+01 1ve5A 311 5.52e+01 1c0pA 363 5.54e+01 1an9A c.4.1.2,d.16.1.3 30647,37934 2cxcA 144 5.56e+01 1k0tA 80 5.67e+01 d.58.1.2 71976 1fzyA 149 5.70e+01 d.20.1.1 65072 1ec7A 446 5.72e+01 1bqg c.1.11.2,d.54.1.1 29218,38862 1e9rA 437 5.77e+01 c.37.1.11 64827 2bkrA 212 5.81e+01 1wn5A 130 5.82e+01 1qo0D 196 5.82e+01 1qo0D c.23.1.3 31125 1b44D 129 6.00e+01 3chbD b.40.2.1 24960 2eueA 279 6.03e+01 1i06A 180 6.08e+01 1mup b.60.1.1 27131 1a9nB 96 6.14e+01 1urnA d.58.7.1 39165 1r5lA 262 6.15e+01 a.5.3.1,c.13.1.1 97099,97100 1th8A 145 6.20e+01 d.122.1.3 106908 1jv4A 162 6.21e+01 b.60.1.1 67343 1czfA 362 6.21e+01 1czfA b.80.1.3 28031 1i05A 180 6.22e+01 1mup b.60.1.1 27130 1zndA 174 6.24e+01 1l0oA 150 6.25e+01 d.122.1.3 73403 1tin 69 6.29e+01 2sniI d.40.1.1 38580 2di4A 238 6.31e+01 1hyqA 263 6.41e+01 1hyqA c.37.1.10 61412 1gegA 256 6.50e+01 1ybvA c.2.1.2 29888 1dik 874 6.59e+01 1dik c.1.12.2,c.8.1.1,d.142.1.5 29304,30702,41572 1mup 166 6.60e+01 1mup b.60.1.1 27133 1e6uA 321 6.70e+01 1bsvA c.2.1.2 29805 1kyhA 276 6.79e+01 c.72.1.4 73222 2cx5A 158 6.82e+01 1ii7A 333 7.01e+01 1ii7A d.159.1.4 62415 1mit 69 7.20e+01 1hymA d.40.1.1 38582 1te0A 318 7.28e+01 1v86A 95 7.39e+01 d.15.1.1 108421 1r5tA 142 7.42e+01 c.97.1.1 104812 1fxtA 149 7.42e+01 d.20.1.1 65055 1a4yA 460 7.50e+01 1a4yA c.10.1.1 30852 1pot 325 7.55e+01 1pot c.94.1.1 35807 2erxA 172 7.61e+01 1ahpA 797 7.65e+01 1a8i c.87.1.4 35544 2a7mA 250 7.66e+01 2a0jA 149 7.72e+01 1pt6A 213 7.76e+01 c.62.1.1 95091 1v7pC 200 7.80e+01 c.62.1.1 108408 1xhbA 472 7.90e+01 1dj0A 264 7.90e+01 1dj0A d.265.1.1 90337 1b01A 45 7.94e+01 2cpgA a.43.1.3 17458 1s3zA 165 8.00e+01 d.108.1.1 105250 2gkeA 274 8.01e+01 1lgr 468 8.05e+01 1lgr d.15.9.1,d.128.1.1 37837,41167 1k8rB 110 8.06e+01 d.15.1.5 72180 2ffuA 501 8.07e+01 1xewY 172 8.21e+01 2lgsA 468 8.26e+01 1lgr d.15.9.1,d.128.1.1 37838,41168 1reqD 637 8.28e+01 1reqB c.1.19.1,c.23.6.1 29623,31250 1u1hA 765 8.28e+01 c.1.22.2,c.1.22.2 107580,107581 2faoA 309 8.31e+01 2cu1A 103 8.32e+01 1l5wA 796 8.40e+01 c.87.1.4 73605 1m41A 380 8.42e+01 c.1.16.4 78595 1c3yA 108 8.43e+01 1c3yA a.39.2.1 17387 2ca6A 386 8.53e+01 1y8qA 346 8.53e+01 2a5yB 549 8.65e+01 1x6mA 196 8.70e+01 2gnoA 305 8.75e+01 1dgrM 93 8.96e+01 1caxB b.82.1.2 28101 1dgrW 93 9.00e+01 1caxB