# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1uby 367 1.79e+00 1uby a.128.1.1 19435 1fps 348 3.36e+00 1uby a.128.1.1 19436 1yq7A 374 4.59e+00 1z8oA 404 5.07e+00 1epxA 370 5.12e+00 1fbaA c.1.10.1 29150 1a6q 382 5.26e+00 1a6q a.159.1.1,d.219.1.1 75801,75802 2f94F 350 5.33e+00 1yv5A 374 6.10e+00 1jipA 403 6.20e+00 a.104.1.1 66748 1w44A 331 6.55e+00 1xc3A 302 7.83e+00 1aoxA 203 7.90e+00 1aoxA c.62.1.1 34151 1q77A 138 1.05e+01 c.26.2.4 96023 1lngA 87 1.16e+01 d.201.1.1 74045 1zpvA 91 1.26e+01 1k2fA 190 1.42e+01 b.8.1.2 68054 1v7pC 200 1.52e+01 c.62.1.1 108408 1wqaA 455 1.57e+01 1k3xA 262 1.81e+01 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1kx9A 112 2.19e+01 a.118.21.1 77602 2apoA 357 2.34e+01 1wduA 245 2.72e+01 d.151.1.1 109286 1x6mA 196 2.74e+01 2lbd 267 2.80e+01 2lbd a.123.1.1 19287 1wj9A 211 3.07e+01 4lbd 267 3.09e+01 2lbd a.123.1.1 19289 1vkhA 273 3.12e+01 c.69.1.32 108662 1fcyA 236 3.23e+01 2lbd a.123.1.1 19282 1xqiA 195 3.54e+01 1ffkI 194 3.62e+01 1ffkI d.12.1.2 37494 1w1wA 430 3.66e+01 2ev7A 64 3.75e+01 1aeiA 315 3.87e+01 1avc a.65.1.1 18180 1ne8A 117 3.90e+01 b.34.6.2 80424 1ie9A 259 3.99e+01 1db1A a.123.1.1 62318 2cg4A 152 4.10e+01 1em8A 147 4.10e+01 c.128.1.1 90457 1vr5A 547 4.31e+01 1v6tA 255 4.37e+01 1ov2A 99 4.41e+01 a.13.1.1 93580 1y6hA 177 4.48e+01 1jnrA 643 4.50e+01 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 1r9cA 139 4.52e+01 d.32.1.2 97255 1w18A 493 4.57e+01 1db1A 259 4.60e+01 1db1A a.123.1.1 19329 1ru3A 732 4.63e+01 e.26.1.3 97835 1u7pA 164 4.64e+01 1i06A 180 4.78e+01 1mup b.60.1.1 27131 2fjbA 643 4.78e+01 1rp4A 389 4.79e+01 a.227.1.1 105027 1ws6A 171 4.82e+01 1df3A 162 4.83e+01 1mup b.60.1.1 27134 2bkrA 212 4.84e+01 1i05A 180 4.85e+01 1mup b.60.1.1 27130 1g71A 347 4.97e+01 1g71A d.264.1.1 43268 1k8tA 510 5.01e+01 e.41.1.1 68316 1dm5A 315 5.03e+01 1avc a.65.1.1 18186 1mup 166 5.29e+01 1mup b.60.1.1 27133 1ztdA 133 5.43e+01 1jv4A 162 5.44e+01 b.60.1.1 67343 1psqA 163 5.52e+01 c.47.1.10 88283 1vdeA 454 5.52e+01 1vdeA b.86.1.2,d.95.2.2,d.95.2.2 28378,40581,40582 1ymqA 261 5.58e+01 1fseA 74 5.62e+01 1fseA a.4.6.2 60000 1a41 234 5.63e+01 1a41 d.163.1.2 42174 1z91A 147 6.10e+01 2sttA 96 6.10e+01 1awcA a.4.5.21 16163 1e0tA 470 6.20e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 1vbkA 307 6.21e+01 2a7oA 112 6.24e+01 1xngA 268 6.50e+01 2a2pA 129 6.50e+01 1y2mA 716 6.55e+01 1aab 83 6.59e+01 1cktA a.21.1.1 16420 1rzuA 485 6.59e+01 c.87.1.8 105140 2cfxA 144 6.66e+01 1t6cA 315 6.66e+01 c.55.1.8,c.55.1.8 106558,106559 1q98A 165 6.69e+01 c.47.1.10 96253 2bjcA 62 6.71e+01 1igtB 444 6.80e+01 1igtB b.1.1.1,b.1.1.2,b.1.1.2,b.1.1.2 19765,20867,20868,20869 1pvvA 315 6.83e+01 c.78.1.1,c.78.1.1 95190,95191 1a1s 314 6.85e+01 1othA c.78.1.1,c.78.1.1 35258,35259 1uxd 65 6.92e+01 1uxc a.35.1.5 17118 1rkbA 173 6.93e+01 1qqrA 138 7.07e+01 1bmlC d.15.5.1 37721 1xhbA 472 7.12e+01 1cjgA 62 7.33e+01 1pru a.35.1.5 17112 1wnlA 235 7.38e+01 3pbgA 468 7.52e+01 1e70M c.1.8.4 28951 1i1gA 141 7.58e+01 a.4.5.32,d.58.4.2 65982,65983 1auiB 169 7.66e+01 1auiB a.39.1.5 17325 2aa1A 144 7.69e+01 2bkqA 212 7.71e+01 1zljA 78 7.71e+01 2mev2 256 7.78e+01 1aym2 1l5wA 796 7.81e+01 c.87.1.4 73605 1lj9A 144 7.81e+01 a.4.5.28 78035 2bl8A 103 7.82e+01 2cunA 410 7.83e+01 1i1dA 161 8.43e+01 1i21A d.108.1.1 61526 1lre 81 8.53e+01 1lre a.13.1.1 16376 1pt6A 213 8.55e+01 c.62.1.1 95091 1n3bA 216 8.61e+01 c.37.1.1 79959 1kt6A 183 8.68e+01 b.60.1.1 84466 1csmA 256 8.89e+01 5csmA a.130.1.2 19495 1op1A 82 8.97e+01 a.13.1.1 93396