# List of top-scoring protein chains for T0356.t06-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1wqaA	455	7.67e-01			
2fu0A	160	1.46e+01			
1k8rB	110	1.54e+01		d.15.1.5	72180
1dekA	241	1.61e+01	1dekA	c.37.1.1	31842
2f3oA	776	1.83e+01			
1of5B	184	2.18e+01		d.17.4.2	86934
1tpwA	247	2.34e+01	1amk	c.1.1.1	28449
1tpc1	247	2.51e+01	1amk		
1ybyA	215	2.54e+01			
1j0dA	341	2.65e+01		c.79.1.1	83902
2eueA	275	2.66e+01			
1tpvA	247	2.67e+01	1amk	c.1.1.1	28443
2fh9A	274	2.77e+01			
1dkfB	235	2.82e+01	2lbd	a.123.1.1	19281
1i35A	95	2.91e+01		d.15.1.5	66017
1fd0A	235	3.14e+01		a.123.1.1	76164
1tph1	247	3.14e+01	1amk		
1fcyA	236	3.15e+01	2lbd	a.123.1.1	19282
1spqA	247	3.21e+01		c.1.1.1	105878
1exaA	246	3.21e+01	2lbd	a.123.1.1	19285
1su5A	247	3.22e+01		c.1.1.1	106020
1sw7A	248	3.23e+01		c.1.1.1	106073
1sw3A	248	3.29e+01		c.1.1.1	106065
1ssdA	247	3.30e+01		c.1.1.1	105979
2lbd	267	3.32e+01	2lbd	a.123.1.1	19287
1sq7A	247	3.32e+01		c.1.1.1	105886
1sw0A	248	3.34e+01		c.1.1.1	106060
1tpb1	247	3.38e+01	1amk		
1zu4A	320	3.39e+01			
1tpuA	247	3.51e+01	1amk	c.1.1.1	28441
2czgA	433	4.59e+01			
1yvbA	241	5.13e+01			
1f2dA	341	5.14e+01	1f2dA	c.79.1.1	35298
1j0eA	341	5.15e+01		c.79.1.1	83906
1ob8A	135	5.26e+01			
1xrjA	261	5.27e+01			
1s1iV	148	5.30e+01		i.1.1.1	105196
1timA	247	5.31e+01	1amk	c.1.1.1	28453
2dbbA	151	5.34e+01			
1t3cA	421	5.36e+01		d.92.1.7	106343
1uj2A	252	5.50e+01		c.37.1.6	99452
1rioA	98	6.14e+01		a.35.1.2	97513
2fv1A	377	6.19e+01			
1xapA	267	6.26e+01			
1pybA	111	6.42e+01		b.40.4.4	95330
1j6uA	469	6.50e+01		c.5.1.1,c.59.1.1,c.72.2.1	77094,77095,77096
2cugA	88	6.52e+01			
1bgp	309	6.58e+01	1bgp	a.93.1.1	18690
2fuzA	377	6.64e+01			
1xdkB	303	6.66e+01			
1z90A	469	6.72e+01			
2u1a	88	7.88e+01	2u1a	d.58.7.1	39164
1di1A	300	7.98e+01	1di1A	a.128.1.4	19446
1nn4A	162	8.13e+01		c.121.1.1	85888
1fa0A	537	8.32e+01	1fa0B	d.58.16.1,a.160.1.1,d.218.1.3	39335,75837,75838
2cr7A	80	8.46e+01			
2cg5B	91	8.71e+01			
1lb8A	263	8.83e+01		c.94.1.1	73800
1exzA	141	8.83e+01	1exzA	a.26.1.2	16877
1vk0A	206	8.89e+01		c.55.3.5	100839