# List of top-scoring protein chains for t06-100-40-40-str2+CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1tcvA 287 2.72e+00 1b8oA 284 4.29e+00 1b8oA c.56.2.1 33762 1vheA 373 4.42e+00 b.49.3.1,c.56.5.4 100669,100670 1bqk 124 4.70e+00 1bqk b.6.1.1 22889 1tqjA 230 5.28e+00 c.1.2.2 107228 1a6q 382 5.80e+00 1a6q a.159.1.1,d.219.1.1 75801,75802 1k7jA 206 5.84e+00 d.115.1.1 72103 1wqaA 455 6.13e+00 1o66A 275 6.24e+00 c.1.12.8 92547 1qe5A 266 6.45e+00 1b8oA c.56.2.1 33784 1xc1A 309 6.73e+00 c.94.1.1 109543 1ia9A 280 7.05e+00 1ia9A d.144.1.5 62113 1wdtA 665 7.43e+00 1v6tA 255 7.45e+00 1xwyA 264 7.81e+00 1z0sA 278 7.89e+00 1kt6A 183 7.93e+00 b.60.1.1 84466 1s3zA 165 8.66e+00 d.108.1.1 105250 1sjiA 350 9.51e+00 1i4uA 181 9.73e+00 b.60.1.1 61732 1e9rA 437 1.02e+01 c.37.1.11 64827 1w3iA 293 1.03e+01 c.1.10.1 109152 2faoA 309 1.03e+01 1t7lA 766 1.08e+01 1fcyA 236 1.09e+01 2lbd a.123.1.1 19282 1d3yA 301 1.26e+01 1d3yA e.12.1.1 43252 1kicA 339 1.33e+01 c.70.1.1 72510 1izcA 339 1.51e+01 c.1.12.5 83838 2av4A 162 1.51e+01 2f5gA 133 1.60e+01 7odcA 424 1.65e+01 7odcA b.49.2.3,c.1.6.1 26488,28650 1mg7A 417 1.73e+01 d.14.1.6,d.58.26.6 84954,84955 1vcvA 226 1.76e+01 1suwA 249 1.76e+01 e.52.1.1 106027 1pvvA 315 1.80e+01 c.78.1.1,c.78.1.1 95190,95191 2bsxA 253 1.88e+01 1ru3A 732 2.03e+01 e.26.1.3 97835 1vhwA 253 2.07e+01 c.56.2.1 100706 1f5vA 240 2.08e+01 1bkjA d.90.1.1 40255 1xl7A 612 2.10e+01 1qh4A 380 2.14e+01 1qh4A a.83.1.1,d.128.1.2 18462,41197 1xgsA 295 2.19e+01 1bn5 a.4.5.25,d.127.1.1 16216,41153 1k3rA 268 2.27e+01 b.40.4.10,c.116.1.2 72018,72019 1wduA 245 2.31e+01 d.151.1.1 109286 1w8sA 263 2.34e+01 1jb7B 260 2.38e+01 1otcB b.40.4.3 62839 1ztuA 341 2.39e+01 1r5lA 262 2.39e+01 a.5.3.1,c.13.1.1 97099,97100 1cb0A 283 2.45e+01 1cb0A c.56.2.1 33790 2asbA 251 2.48e+01 1nofA 383 2.49e+01 b.71.1.2,c.1.8.3 92020,92021 2a8yA 270 2.51e+01 1vjeA 166 2.55e+01 d.185.1.2 100807 1sg4A 260 2.56e+01 1ta3A 274 2.61e+01 c.1.8.5 106731 1wa3A 205 2.74e+01 1qy1A 174 3.05e+01 b.60.1.1 96568 1q2lA 939 3.10e+01 1d8wA 426 3.14e+01 1de5A c.1.15.2 29394 1wtaA 275 3.18e+01 1q45A 391 3.19e+01 c.1.4.1 95780 2bitX 165 3.19e+01 2c0hA 353 3.20e+01 1m3uA 264 3.30e+01 c.1.12.8 84784 1pixA 587 3.32e+01 c.14.1.4 94708 1zndA 174 3.34e+01 1odkA 235 3.34e+01 c.56.2.1 86863 1eceA 358 3.37e+01 1eceA c.1.8.3 28813 1auiB 169 3.46e+01 1auiB a.39.1.5 17325 1f35A 162 3.47e+01 1f35A b.94.1.1 59628 2fvgA 340 3.59e+01 1wz8A 264 3.69e+01 1ub3A 220 3.77e+01 c.1.10.1 88395 1zd9A 188 3.79e+01 1zzmA 259 3.85e+01 1j6oA 268 3.89e+01 c.1.9.12 77088 1bj7 156 3.95e+01 1bj7 b.60.1.1 27113 1fm0E 150 3.95e+01 1fmaE d.41.5.1 38629 1ynpA 317 3.99e+01 1zthA 258 4.10e+01 1knwA 425 4.11e+01 b.49.2.3,c.1.6.1 90969,90970 2f2hA 773 4.21e+01 1oyc 400 4.24e+01 1oyc c.1.4.1 28603 1w85A 368 4.25e+01 1efpB 252 4.30e+01 1efvB c.26.2.3 31636 1kcfA 258 4.39e+01 a.140.2.1,c.55.3.7 68434,68435 1s5jA 847 4.43e+01 2c6qA 351 4.44e+01 1wh5A 80 4.47e+01 1uk8A 282 4.54e+01 c.69.1.10 107907 1io2A 213 4.59e+01 1ekeA c.55.3.1 62612 1vraB 215 4.64e+01 1j1lA 290 4.68e+01 b.82.1.12 90766 1pmy 123 4.72e+01 1bqk b.6.1.1 22888 1ua4A 455 4.74e+01 c.72.1.3 99128 1nrjB 218 4.87e+01 c.37.1.8 86125 1oxxK 353 4.87e+01 b.40.6.3,c.37.1.12 93715,93716 1wvfA 520 5.06e+01 1nwaA 203 5.07e+01 d.58.28.1 86295 1v9kA 228 5.08e+01 d.265.1.3 108449 1j31A 262 5.09e+01 d.160.1.2 90808 1avqA 228 5.19e+01 1avqA c.52.1.13 33326 1bjt 793 5.49e+01 1bjt e.11.1.1 43249 1mzbA 136 5.51e+01 a.4.5.42 91497 1n82A 331 5.55e+01 c.1.8.3 91703 1u6rA 380 5.56e+01 1oaoC 729 5.64e+01 e.26.1.3 86746 1zosA 230 5.75e+01 1nuyA 337 5.82e+01 e.7.1.1 86213 1cl8A 276 5.83e+01 1ckqA c.52.1.1 33230 1r8sA 164 5.88e+01 c.37.1.8 97247 2ffcA 353 5.91e+01 1r3sA 367 6.17e+01 c.1.22.1 96963 1vkhA 273 6.18e+01 c.69.1.32 108662 1ws0A 156 6.19e+01 2a5dA 175 6.25e+01 1efvB 255 6.31e+01 1efvB c.26.2.3 31634 1qgvA 142 6.32e+01 1qgvA c.47.1.8 33056 1w77A 228 6.37e+01 1wvqA 167 6.38e+01 1musA 477 6.57e+01 c.55.3.4 79494 1ydlA 79 6.59e+01 1z7xW 461 6.59e+01 1sznA 417 6.60e+01 b.71.1.1,c.1.8.1 106162,106163 1hp1A 516 6.74e+01 d.114.1.1,d.159.1.2 70976,70977 1h65A 270 6.77e+01 c.37.1.8 65640 3pmgA 561 6.78e+01 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1z47A 355 6.80e+01 2fckA 181 6.82e+01 1yb0A 159 6.90e+01 2hvm 273 6.93e+01 1cnv c.1.8.5 28985 2al2A 436 6.94e+01 2al1A 436 6.97e+01 1z41A 338 7.02e+01 1sviA 195 7.04e+01 c.37.1.8 106048 1epxA 370 7.07e+01 1fbaA c.1.10.1 29150 1irzA 64 7.11e+01 a.4.1.11 76772 1sgwA 214 7.13e+01 c.37.1.12 105541 1qd1A 325 7.15e+01 1qd1A d.58.34.1,d.58.34.1 39493,39494 1umqA 81 7.20e+01 a.4.1.12 99625 1geqA 248 7.21e+01 2tysA c.1.2.4 28589 1wxrA 1048 7.24e+01 1b25A 619 7.31e+01 1b25A a.110.1.1,d.152.1.1 19044,41796 2b1xA 470 7.31e+01 2choA 716 7.38e+01 2fwtA 125 7.43e+01 2cxaA 256 7.48e+01 1zzoA 136 7.54e+01 1r6xA 395 7.58e+01 b.122.1.3,c.26.1.5 97167,97168 1fvgA 199 7.59e+01 1fvaA d.58.28.1 39408 1qwgA 251 7.76e+01 c.1.27.1 96473 1wy7A 207 7.78e+01 1aocA 175 7.84e+01 1aocA g.17.1.5 44817 1edt 271 7.94e+01 2ebn c.1.8.5 28993 2c0nA 203 7.97e+01 2fyxA 143 8.06e+01 2b4vA 468 8.10e+01 1g6aA 271 8.14e+01 1btl e.3.1.1 42704 1wohA 305 8.24e+01 c.42.1.1 109446 1behA 187 8.38e+01 1a44 b.17.1.1 23700 1b43A 340 8.39e+01 1a76 a.60.7.1,c.120.1.2 18092,33362 2exrA 524 8.41e+01 1g0cA 364 8.44e+01 7a3hA c.1.8.3 60165 1uozA 315 8.45e+01 1yloA 348 8.46e+01 2fpmA 322 8.49e+01 1n5nA 180 8.53e+01 d.167.1.1 85336 1msc 129 8.60e+01 1msc d.85.1.1 40039 1xocA 520 8.61e+01 1lst 239 8.61e+01 1lst c.94.1.1 35755 1o9gA 250 8.63e+01 c.66.1.29 86692 1r7aA 504 8.65e+01 b.71.1.1,c.1.8.1 97192,97193 1uslA 170 8.73e+01 c.121.1.1 99871 1n4qB 377 8.77e+01 a.102.4.3 91636 1o6zA 303 8.83e+01 c.2.1.5,d.162.1.1 81107,81108 1dceB 331 8.91e+01 1dceB a.102.4.3 18872