# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1uirA 314 2.30e-01 c.66.1.17 99429 1vggA 161 4.81e-01 2al2A 436 6.59e-01 2al1A 436 7.14e-01 1oneA 436 7.70e-01 4enl c.1.11.1,d.54.1.1 29200,38844 1bqk 124 1.12e+00 1bqk b.6.1.1 22889 1ryiA 382 1.25e+00 1wqaA 455 1.28e+00 2fckA 181 1.97e+00 1e9rA 437 2.45e+00 c.37.1.11 64827 2akzA 439 2.47e+00 2av4A 162 3.56e+00 1xwyA 264 3.78e+00 1ht6A 405 3.81e+00 b.71.1.1,c.1.8.1 83629,83630 1qysA 106 3.83e+00 k.41.1.1 96603 1ymqA 261 4.32e+00 1ko6A 187 4.34e+00 b.119.1.1 77471 1w77A 228 4.39e+00 1fcyA 236 4.68e+00 2lbd a.123.1.1 19282 1gegA 256 4.69e+00 1ybvA c.2.1.2 29888 1ursA 402 4.85e+00 c.94.1.1 99833 2ffuA 501 4.88e+00 1b8oA 284 5.17e+00 1b8oA c.56.2.1 33762 2g5cA 281 5.65e+00 3pmgA 561 5.93e+00 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1jmtA 104 5.97e+00 d.58.7.3 63180 1yloA 348 6.83e+00 1ooeA 236 6.85e+00 c.2.1.2 87196 1r8sA 164 6.95e+00 c.37.1.8 97247 2f5gA 133 7.00e+00 2cxcA 144 7.07e+00 1jztA 246 7.39e+00 c.104.1.1 63319 1vp4A 425 7.59e+00 1o3yA 166 7.86e+00 c.37.1.8 86618 1qo0D 196 8.01e+00 1qo0D c.23.1.3 31125 1lc5A 364 8.03e+00 c.67.1.1 73827 1yb0A 159 8.81e+00 1k8rB 110 8.85e+00 d.15.1.5 72180 1rwzA 245 8.92e+00 d.131.1.2,d.131.1.2 98005,98006 1s3zA 165 9.05e+00 d.108.1.1 105250 1vhoA 346 9.62e+00 b.49.3.1,c.56.5.4 100694,100695 2av5A 120 9.78e+00 1vqsA 116 1.02e+01 1o7nA 449 1.06e+01 b.33.1.2,d.129.3.3 81162,81163 1wz8A 264 1.17e+01 1pcfA 66 1.20e+01 1pcfA d.18.1.1 38142 2cpgA 45 1.31e+01 2cpgA a.43.1.3 17455 2a7mA 250 1.32e+01 2a5dA 175 1.32e+01 1tqjA 230 1.41e+01 c.1.2.2 107228 2arhA 203 1.43e+01 1fvgA 199 1.44e+01 1fvaA d.58.28.1 39408 1n4qB 377 1.45e+01 a.102.4.3 91636 1tcvA 287 1.52e+01 1j27A 102 1.56e+01 d.58.50.1 90778 2cw5A 255 1.56e+01 2glfA 450 1.60e+01 1i9gA 280 1.62e+01 c.66.1.13 62090 1vjeA 166 1.68e+01 d.185.1.2 100807 1pzxA 289 1.73e+01 c.119.1.1 95484 1t8tA 271 1.73e+01 c.37.1.5 106685 1oxxK 353 1.81e+01 b.40.6.3,c.37.1.12 93715,93716 1mml 265 1.90e+01 1mml e.8.1.2 43015 1v60A 123 1.90e+01 2faoA 309 1.92e+01 1z6nA 167 1.93e+01 1tvfA 369 1.96e+01 b.105.1.2,e.3.1.1 107358,107359 1bykA 255 2.02e+01 1bykA c.93.1.1 35706 2bo4A 397 2.06e+01 1g55A 343 2.08e+01 1g55A c.66.1.26 34247 1s96A 219 2.08e+01 c.37.1.1 98740 1r5lA 262 2.09e+01 a.5.3.1,c.13.1.1 97099,97100 1q2lA 939 2.09e+01 1m1hA 248 2.10e+01 b.114.1.1,d.58.42.1 78415,78416 1twfK 120 2.12e+01 2b0jA 358 2.17e+01 2dbbA 151 2.18e+01 1eejA 216 2.20e+01 1eejA c.47.1.9,d.17.3.1 33057,38071 2a1iA 146 2.21e+01 1s2dA 167 2.22e+01 c.23.14.1 98377 1oz9A 150 2.27e+01 d.92.1.15 93808 1u2wA 122 2.44e+01 1cvrA 435 2.46e+01 1cvrA b.1.18.12,c.17.1.2 21949,31006 2fliA 220 2.48e+01 1zpvA 91 2.53e+01 1rz3A 201 2.57e+01 c.37.1.6 98132 1xewY 172 2.61e+01 1wduA 245 2.72e+01 d.151.1.1 109286 1jmsA 381 2.73e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1ztuA 341 2.74e+01 1sviA 195 2.76e+01 c.37.1.8 106048 1d3yA 301 2.76e+01 1d3yA e.12.1.1 43252 2an9A 207 2.80e+01 1pieA 419 2.80e+01 d.14.1.5,d.58.26.7 94706,94707 1mzbA 136 2.82e+01 a.4.5.42 91497 1u7lA 392 2.83e+01 1wwzA 159 2.84e+01 1sjiA 350 2.86e+01 1ec7A 446 2.87e+01 1bqg c.1.11.2,d.54.1.1 29218,38862 1qjcA 158 2.87e+01 1b6tA c.26.1.3 63328 2ab5A 269 2.88e+01 2fsrA 195 2.88e+01 1jysA 242 2.89e+01 c.56.2.1 77216 1kt6A 183 2.94e+01 b.60.1.1 84466 1f2tB 148 2.95e+01 1f2tB 1geqA 248 3.00e+01 2tysA c.1.2.4 28589 1f35A 162 3.01e+01 1f35A b.94.1.1 59628 2fiqA 420 3.05e+01 1fo8A 343 3.08e+01 1foaA c.68.1.10 59927 2ajrA 331 3.18e+01 1iq8A 582 3.22e+01 c.1.20.1,b.122.1.1,d.17.6.1 71270,83074,83075 1hfeL 421 3.22e+01 1fehA c.96.1.1,d.58.1.5 36018,39001 2b4aA 138 3.30e+01 1o4yA 288 3.34e+01 b.29.1.2 92473 2czrA 226 3.40e+01 1r5tA 142 3.40e+01 c.97.1.1 104812 1sw6A 327 3.41e+01 1sw6A d.211.1.1 19176 1ef1C 90 3.41e+01 1ef1C a.137.5.1 19642 1g3qA 237 3.46e+01 1hyqA c.37.1.10 60237 1dqpA 230 3.49e+01 1dqnA c.61.1.1 34069 1mj5A 302 3.51e+01 c.69.1.8 91285 2es7A 142 3.56e+01 1bazA 53 3.63e+01 1bazA a.43.1.1 17421 1vl5A 260 3.71e+01 c.66.1.41 108720 1d8wA 426 3.73e+01 1de5A c.1.15.2 29394 1ve0A 134 3.76e+01 1wvqA 167 3.76e+01 1nv8A 284 3.82e+01 c.66.1.30 86224 2g2cA 167 3.85e+01 1oqvA 192 3.88e+01 d.24.1.2 87320 1pvvA 315 4.04e+01 c.78.1.1,c.78.1.1 95190,95191 1wtaA 275 4.15e+01 1id1A 153 4.19e+01 1id1A c.2.1.9 62286 1h1nA 305 4.26e+01 c.1.8.3 70855 1qwdA 177 4.29e+01 b.60.1.1 96471 1w6uA 302 4.31e+01 2yhx 457 4.35e+01 2yhx i.12.1.1 46024 1mwmA 320 4.51e+01 c.55.1.1,c.55.1.1 79580,79581 1tfr 305 4.53e+01 1tfr a.60.7.1,c.120.1.2 18081,33351 1ia9A 280 4.62e+01 1ia9A d.144.1.5 62113 1vd5A 377 4.64e+01 a.102.1.7 108518 1ry9A 145 4.69e+01 d.198.1.1 98094 1v8hA 107 4.75e+01 1e12A 253 4.77e+01 1c3wA f.13.1.1 43428 1xg8A 111 4.77e+01 2b61A 377 4.83e+01 1yc5A 246 4.83e+01 2b7kA 200 4.84e+01 1qe5A 266 4.86e+01 1b8oA c.56.2.1 33784 1o4sA 389 4.90e+01 c.67.1.1 86620 1cl1A 395 4.92e+01 1cl2A c.67.1.3 34395 2fv1A 377 4.92e+01 1ftrA 296 4.93e+01 1ftrA d.58.33.1,d.58.33.1 39485,39486 1wstA 417 4.93e+01 1wi1A 126 4.94e+01 1oo0B 110 4.96e+01 d.58.7.1 87183 1t3tA 1303 5.01e+01 a.5.10.1,c.23.16.1,d.284.1.2,d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 106381,106382,106383,106384,106385,106386,106387 1zejA 293 5.10e+01 1z0sA 278 5.12e+01 1xahA 354 5.15e+01 1vi4A 174 5.19e+01 c.8.7.1 100731 1i12A 160 5.26e+01 1i21A d.108.1.1 61515 1g66A 207 5.28e+01 1bs9 c.69.1.30 31329 1vheA 373 5.34e+01 b.49.3.1,c.56.5.4 100669,100670 1vkhA 273 5.36e+01 c.69.1.32 108662 1xx1A 285 5.41e+01 1vr9A 213 5.42e+01 1l5xA 280 5.51e+01 c.106.1.1 77718 2cxxA 190 5.51e+01 1kyhA 276 5.55e+01 c.72.1.4 73222 1on0A 158 5.59e+01 d.108.1.1 87095 1wn5A 130 5.61e+01 1q4rA 112 5.61e+01 d.58.4.4 95823 1tljA 213 5.65e+01 d.282.1.1 107126 2atzA 180 5.66e+01 1hzdA 272 5.69e+01 c.14.1.3 65969 1jndA 420 5.74e+01 c.1.8.5,d.26.3.1 71757,71758 1ws0A 156 5.82e+01 1ob8A 135 5.82e+01 1b56 135 5.84e+01 1hmt b.60.1.2 27183 1wmhB 86 5.87e+01 1i52A 236 5.90e+01 1i52A c.68.1.13 61767 1i88A 389 5.96e+01 c.95.1.2,c.95.1.2 66070,66071 1qu9A 128 5.96e+01 1qu9A d.79.1.1 39755 2gcfA 73 5.97e+01 1n5nA 180 5.98e+01 d.167.1.1 85336 1yp2A 451 5.99e+01 1bdfA 235 5.99e+01 1bdfA d.74.3.1,d.181.1.1 39727,42602 1g0cA 364 6.02e+01 7a3hA c.1.8.3 60165 1lk9A 448 6.21e+01 c.67.1.1 78057 2cviA 83 6.23e+01 1pot 325 6.24e+01 1pot c.94.1.1 35807 1bf6A 291 6.27e+01 1pscA c.1.9.3 29065 1wqwA 235 6.28e+01 1wa3A 205 6.34e+01 1z4rA 168 6.34e+01 1wdjA 187 6.40e+01 1kk1A 410 6.46e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1quqB 121 6.48e+01 1quqB b.40.4.3 25305 2f4wA 187 6.52e+01 2fexA 188 6.62e+01 1yckA 175 6.63e+01 2dcnA 311 6.71e+01 2ez3A 302 6.73e+01 1wdpA 495 6.74e+01 1e8cA 498 6.87e+01 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1c0pA 363 6.92e+01 1an9A c.4.1.2,d.16.1.3 30647,37934 1a4iA 301 7.00e+01 1a4iA c.2.1.7,c.58.1.2 30278,33926 1wyzA 242 7.01e+01 1b3aA 67 7.30e+01 1b3aA d.9.1.1 37410 2h6dA 276 7.35e+01 1vkcA 158 7.35e+01 1sgwA 214 7.43e+01 c.37.1.12 105541 2bhuA 602 7.44e+01 1oc2A 348 7.46e+01 c.2.1.2 92765 1pswA 348 7.50e+01 c.87.1.7 88287 2bikB 313 7.52e+01 1nf2A 268 7.54e+01 c.108.1.10 91849 2f51A 118 7.54e+01 3sdhA 146 7.55e+01 3sdhA a.1.1.2 14984 1w8iA 156 7.56e+01 1nd4A 264 7.67e+01 d.144.1.6 91815 2affB 44 7.70e+01 1ufwA 95 7.73e+01 d.58.7.1 99358 2ggcA 263 7.75e+01 2ge3A 170 7.79e+01 1qahA 136 7.79e+01 d.79.1.1 96338 1nrjB 218 7.80e+01 c.37.1.8 86125 1xc1A 309 7.81e+01 c.94.1.1 109543 1h6hA 143 7.82e+01 d.189.1.1 65681 1uh5A 329 7.83e+01 c.2.1.2 107840 2f4nA 273 7.85e+01 1w96A 554 7.87e+01 1zhhB 242 7.94e+01 1svy 114 7.97e+01 1svy d.109.1.1 40831 1uwvA 433 8.08e+01 b.40.4.12,c.66.1.40 100128,100129 2cx5A 158 8.11e+01 1gefA 123 8.11e+01 1gefA c.52.1.18 60465 1okgA 373 8.12e+01 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1go4A 205 8.22e+01 d.135.1.1 70292 1eu8A 409 8.25e+01 1eu8A c.94.1.1 59502 1uv4A 293 8.29e+01 2cunA 410 8.34e+01 1xrtA 467 8.47e+01 1auiB 169 8.47e+01 1auiB a.39.1.5 17325 1gpeA 587 8.53e+01 1gpeA c.3.1.2,d.16.1.1 30387,37951 2b0aA 186 8.54e+01 1bgp 309 8.55e+01 1bgp a.93.1.1 18690 1lvwA 295 8.61e+01 c.68.1.6 84723 1c8cA 64 8.63e+01 1azpA b.34.13.1 59084 2d83A 363 8.66e+01 1fg7A 356 8.69e+01 1gewA c.67.1.1 59819 2bsxA 253 8.72e+01 2c1lA 358 8.75e+01 1qf5A 431 8.79e+01 1adeA c.37.1.10 32212 1p77A 272 8.79e+01 c.2.1.7,c.58.1.5 94214,94215 1yj7A 171 8.81e+01 1g2rA 100 8.82e+01 1g2rA d.192.1.1 60231 1zd9A 188 8.89e+01 1i7nA 309 8.91e+01 c.30.1.5,d.142.1.3 83681,83682 1yseA 141 8.91e+01 1dofA 403 8.92e+01 1c3cA a.127.1.1 19429 1xreA 217 8.96e+01