# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1wqaA 455 1.86e-01 1pvvA 315 1.36e+00 c.78.1.1,c.78.1.1 95190,95191 2f94F 350 2.59e+00 1a6q 382 4.79e+00 1a6q a.159.1.1,d.219.1.1 75801,75802 1xc3A 302 5.29e+00 1odkA 235 6.06e+00 c.56.2.1 86863 1d3yA 301 6.25e+00 1d3yA e.12.1.1 43252 1kt6A 183 6.53e+00 b.60.1.1 84466 1ju2A 536 6.64e+00 c.3.1.2,d.16.1.1 77169,77170 2fu2A 102 7.03e+00 1wdtA 665 7.45e+00 1vd5A 377 9.26e+00 a.102.1.7 108518 2fv1A 377 1.23e+01 1vjeA 166 1.31e+01 d.185.1.2 100807 1bqk 124 1.33e+01 1bqk b.6.1.1 22889 2al1A 436 1.35e+01 1ynfA 458 1.44e+01 1othA 321 1.50e+01 1othA c.78.1.1,c.78.1.1 35260,35261 1zndA 174 1.52e+01 1qy1A 174 1.54e+01 b.60.1.1 96568 1bazA 53 1.59e+01 1bazA a.43.1.1 17421 2b99A 156 1.61e+01 1aisB 200 1.65e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 2al2A 436 1.66e+01 1yh1A 359 1.78e+01 1w44A 331 1.80e+01 1oneA 436 1.85e+01 4enl c.1.11.1,d.54.1.1 29200,38844 1iq8A 582 1.88e+01 c.1.20.1,b.122.1.1,d.17.6.1 71270,83074,83075 1zq6A 359 1.95e+01 1wuiS 267 1.96e+01 1tadA 324 1.99e+01 1cipA a.66.1.1,c.37.1.8 18194,32077 2cpgA 45 2.05e+01 2cpgA a.43.1.3 17455 2cunA 410 2.08e+01 2bw3A 534 2.15e+01 1ubkS 267 2.20e+01 e.19.1.1 88423 1v6tA 255 2.24e+01 2cyeA 133 2.24e+01 1z3eB 73 2.38e+01 1lngA 87 2.40e+01 d.201.1.1 74045 2a7oA 112 2.42e+01 1ryiA 382 2.43e+01 1yemA 179 2.51e+01 1h05A 146 2.57e+01 c.23.13.1 76433 1q77A 138 2.57e+01 c.26.2.4 96023 1b8oA 284 2.59e+01 1b8oA c.56.2.1 33762 2bjiA 277 2.64e+01 1dl5A 317 2.66e+01 1dl5A c.66.1.7,d.197.1.1 64720,64721 1nvmB 312 2.72e+01 c.2.1.3,d.81.1.1 86251,86252 1fcyA 236 2.73e+01 2lbd a.123.1.1 19282 1fseA 74 2.75e+01 1fseA a.4.6.2 60000 1xi3A 215 2.85e+01 c.1.3.1 109601 1irdB 146 2.88e+01 a.1.1.2 66287 1mzbA 136 2.97e+01 a.4.5.42 91497 2cbiA 594 3.00e+01 2c46A 241 3.08e+01 1epxA 370 3.09e+01 1fbaA c.1.10.1 29150 2a67A 167 3.11e+01 1q1vA 70 3.16e+01 a.159.4.1 104479 2h6dA 276 3.17e+01 1avqA 228 3.23e+01 1avqA c.52.1.13 33326 1wh5A 80 3.26e+01 1auiB 169 3.29e+01 1auiB a.39.1.5 17325 1vkhA 273 3.29e+01 c.69.1.32 108662 1v74B 87 3.30e+01 a.24.20.1 100443 1zljA 78 3.33e+01 1vbiA 344 3.35e+01 1i3dA 146 3.36e+01 a.1.1.2 61587 1lf7A 182 3.39e+01 b.60.1.1 73878 2bj7A 138 3.39e+01 1xhcA 367 3.43e+01 1zpvA 91 3.48e+01 1e9rA 437 3.48e+01 c.37.1.11 64827 1cg5A 141 3.51e+01 1abwA a.1.1.2 15406 1wrvA 308 3.52e+01 2a6sA 84 3.61e+01 1dekA 241 3.67e+01 1dekA c.37.1.1 31842 1wj9A 211 3.69e+01 1zymA 258 3.78e+01 1zymA a.60.10.1,c.8.1.2 18110,30705 1l2tA 235 3.81e+01 c.37.1.12 73514 1wozA 177 3.87e+01 1e3dA 266 3.87e+01 2frvA e.19.1.1 59188 2di4A 238 3.90e+01 1mr3F 181 3.91e+01 c.37.1.8 79422 2es9A 115 3.92e+01 2a7mA 250 3.95e+01 2g2dA 193 3.96e+01 1bj7 156 4.02e+01 1bj7 b.60.1.1 27113 2bfwA 200 4.09e+01 1ks8A 433 4.12e+01 a.102.1.2 77519 1p4xA 250 4.22e+01 a.4.5.28,a.4.5.28 87784,87785 1yseA 141 4.22e+01 1voqa 90 4.22e+01 2fpoA 202 4.30e+01 1ztdA 133 4.34e+01 1wvfA 520 4.38e+01 1y2mA 716 4.45e+01 1hgxA 183 4.49e+01 1tc1A c.61.1.1 34027 2d5xB 146 4.53e+01 2aa1A 144 4.55e+01 1a6m 151 4.56e+01 1a6m a.1.1.2 15018 1j0hA 588 4.57e+01 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1gen 218 4.59e+01 1gen b.66.1.1 27536 1dbqA 289 4.69e+01 1qpzA c.93.1.1 35666 1kqqA 139 4.70e+01 a.4.3.1 72885 2ap1A 327 4.72e+01 1vfgA 390 4.75e+01 a.173.1.1,d.218.1.4 108570,108571 1ru3A 732 4.78e+01 e.26.1.3 97835 1xyzA 347 4.80e+01 1taxA c.1.8.3 28804 2aeeA 211 4.85e+01 1jysA 242 4.86e+01 c.56.2.1 77216 1w8iA 156 4.93e+01 2apoA 357 4.95e+01 1vehA 92 4.96e+01 1spgA 144 4.97e+01 1abwA a.1.1.2 15409 1tuaA 191 5.03e+01 d.51.1.1,d.51.1.1 107321,107322 1f35A 162 5.04e+01 1f35A b.94.1.1 59628 2b1xA 470 5.11e+01 1pot 325 5.21e+01 1pot c.94.1.1 35807 1wmaA 276 5.22e+01 1l1eA 287 5.22e+01 c.66.1.18 73454 2b4aA 138 5.28e+01 1sj1A 66 5.29e+01 d.58.1.4 105595 1vr5A 547 5.32e+01 1gvnA 90 5.34e+01 a.8.2.1 76353 1jh6A 189 5.34e+01 d.61.1.1 66707 1jftA 340 5.36e+01 a.35.1.5,c.93.1.1 66652,66653 1ekeA 230 5.41e+01 1ekeA c.55.3.1 33572 1vkcA 158 5.43e+01 1nc5A 373 5.44e+01 a.102.1.6 85548 2gsq 202 5.45e+01 1pd21 a.45.1.1,c.47.1.5 17715,33009 1gvdA 52 5.52e+01 a.4.1.3 83338 1wmiA 90 5.52e+01 1vp8A 201 5.58e+01 2b4yA 271 5.60e+01 1bebA 162 5.63e+01 1bebA b.60.1.1 27115 1x6mA 196 5.64e+01 1r5lA 262 5.67e+01 a.5.3.1,c.13.1.1 97099,97100 1it2A 146 5.72e+01 a.1.1.2 66365 2faoA 309 5.76e+01 1uekA 275 5.78e+01 d.14.1.5,d.58.26.5 88483,88484 1yzvA 204 5.87e+01 1nrjB 218 5.88e+01 c.37.1.8 86125 2ah6A 208 5.95e+01 1g291 372 6.11e+01 1g291 2arhA 203 6.14e+01 1y1pA 342 6.15e+01 1b77A 228 6.20e+01 1b77A d.131.1.2,d.131.1.2 41362,41363 1n67A 359 6.24e+01 b.2.3.4,b.2.3.4 85354,85355 1uirA 314 6.25e+01 c.66.1.17 99429 1q67A 231 6.27e+01 b.55.1.7 95960 1n9lA 109 6.28e+01 d.110.3.6 85468 1o60A 292 6.30e+01 c.1.10.4 92532 1w18A 493 6.30e+01 2cw5A 255 6.33e+01 1q3iA 214 6.34e+01 d.220.1.1 104524 1ixmA 192 6.35e+01 1ixmA d.123.1.1 41114 1jayA 212 6.35e+01 c.2.1.6 66478 1eceA 358 6.36e+01 1eceA c.1.8.3 28813 1c1dA 355 6.42e+01 1bw9A c.2.1.7,c.58.1.1 30270,33918 2fupA 168 6.43e+01 1aocA 175 6.46e+01 1aocA g.17.1.5 44817 1nu4A 97 6.52e+01 d.58.7.1 80731 1tuwA 109 6.52e+01 d.58.4.8 107346 1yj7A 171 6.55e+01 2g5cA 281 6.57e+01 2bk9A 153 6.60e+01 1mjhA 162 6.62e+01 1mjhA c.26.2.4 31639 1b4bA 71 6.63e+01 1b4aA d.74.2.1 39718 1lmb3 92 6.69e+01 1lmb3 1gvjA 146 6.73e+01 a.4.5.21 90525 1h3oA 75 6.74e+01 a.22.1.3 76644 1fi4A 416 6.84e+01 1fi4A d.14.1.5,d.58.26.2 59847,59848 1ukuA 102 6.87e+01 d.58.5.2 99533 1t8tA 271 6.89e+01 c.37.1.5 106685 1qf9A 194 7.22e+01 1zin c.37.1.1 31848 1oxxK 353 7.23e+01 b.40.6.3,c.37.1.12 93715,93716 1us5A 314 7.24e+01 c.94.1.1 99856 1l5wA 796 7.31e+01 c.87.1.4 73605 1rvgA 305 7.34e+01 c.1.10.2 97920 2gnoA 305 7.35e+01 2ilk 160 7.45e+01 2ilk a.26.1.3 16885 1wwzA 159 7.48e+01 1azo 232 7.48e+01 1azo c.52.1.14 33329 2fu0A 160 7.49e+01 1n81A 186 7.51e+01 a.185.1.1 85388 1g2rA 100 7.52e+01 1g2rA d.192.1.1 60231 1hb6A 86 7.54e+01 a.11.1.1 70959 1rp4A 389 7.61e+01 a.227.1.1 105027 1jbeA 128 7.62e+01 3chy c.23.1.1 62845 1jihA 531 7.64e+01 d.240.1.1,e.8.1.7 90374,90375 1x89A 178 7.65e+01 1v7pC 200 7.67e+01 c.62.1.1 108408 1wi1A 126 7.68e+01 2fiqA 420 7.75e+01 1qsaA 618 7.83e+01 1qsaA a.118.5.1,d.2.1.6 19182,36988 1hlvA 131 7.84e+01 a.4.1.7,a.4.1.7 65854,65855 1zbsA 291 7.84e+01 1xknA 355 7.85e+01 1xviA 275 8.24e+01 1s4kA 120 8.29e+01 a.35.1.6 105254 1ne8A 117 8.29e+01 b.34.6.2 80424 1k3xA 262 8.30e+01 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1dzkA 157 8.34e+01 1obpA b.60.1.1 27096 1ie9A 259 8.34e+01 1db1A a.123.1.1 62318 2f05A 105 8.36e+01 1nar 290 8.38e+01 1nar c.1.8.5 28988 1ys7A 233 8.41e+01 2a72A 146 8.43e+01 1bqbA 301 8.45e+01 1hyt d.92.1.2 58962 1v32A 101 8.49e+01 a.42.1.1 100277 1ri5A 298 8.56e+01 c.66.1.34 97502 2a25A 193 8.66e+01 1c0pA 363 8.72e+01 1an9A c.4.1.2,d.16.1.3 30647,37934 1yw5A 177 8.75e+01 1hhnA 101 8.78e+01 1hhnA b.104.1.1 61043 1aun 208 8.80e+01 1thv b.25.1.1 23900 1whbA 157 8.83e+01 2boqA 331 8.85e+01 1ia9A 280 8.85e+01 1ia9A d.144.1.5 62113 2gwfA 157 8.87e+01 1vmeA 410 8.88e+01 c.23.5.1,d.157.1.3 108893,108894 1gx5A 536 8.89e+01 e.8.1.4 70682 2igd 61 8.94e+01 2igd d.15.7.1 37821 1viaA 175 8.98e+01 c.37.1.2 100754