# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1wqaA 455 1.39e-02 1xahA 354 1.72e+00 1yb0A 159 1.74e+00 1ymqA 261 2.03e+00 2dbbA 151 2.26e+00 2fckA 181 2.51e+00 1bqk 124 2.87e+00 1bqk b.6.1.1 22889 1uirA 314 2.87e+00 c.66.1.17 99429 2al2A 436 3.05e+00 2akzA 439 3.19e+00 1oneA 436 3.23e+00 4enl c.1.11.1,d.54.1.1 29200,38844 2al1A 436 3.36e+00 1tcvA 287 3.93e+00 1b8oA 284 3.93e+00 1b8oA c.56.2.1 33762 1lvwA 295 4.24e+00 c.68.1.6 84723 1d3yA 301 4.56e+00 1d3yA e.12.1.1 43252 1qo0D 196 4.81e+00 1qo0D c.23.1.3 31125 1k8rB 110 5.06e+00 d.15.1.5 72180 1vggA 161 5.19e+00 1r5lA 262 5.74e+00 a.5.3.1,c.13.1.1 97099,97100 1ryiA 382 6.11e+00 1fo8A 343 6.53e+00 1foaA c.68.1.10 59927 1e9rA 437 6.56e+00 c.37.1.11 64827 2g5cA 281 6.57e+00 1z7xW 461 8.01e+00 1u7lA 392 9.00e+00 1qysA 106 9.30e+00 k.41.1.1 96603 1oz9A 150 9.74e+00 d.92.1.15 93808 1fcyA 236 9.97e+00 2lbd a.123.1.1 19282 3pmgA 561 1.04e+01 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1r5tA 142 1.20e+01 c.97.1.1 104812 1w77A 228 1.24e+01 1ursA 402 1.30e+01 c.94.1.1 99833 1wdtA 665 1.30e+01 2a5dA 175 1.33e+01 1lc5A 364 1.37e+01 c.67.1.1 73827 2av4A 162 1.40e+01 1vp4A 425 1.42e+01 1yc5A 246 1.42e+01 1f2tB 148 1.45e+01 1f2tB 1wtaA 275 1.47e+01 2cw5A 255 1.52e+01 1np7A 489 1.54e+01 a.99.1.1,c.28.1.1 80677,80678 1o7nA 449 1.59e+01 b.33.1.2,d.129.3.3 81162,81163 1pzxA 289 1.59e+01 c.119.1.1 95484 1oc2A 348 1.62e+01 c.2.1.2 92765 2av5A 120 1.63e+01 1vkhA 273 1.69e+01 c.69.1.32 108662 2a7mA 250 1.71e+01 1wqwA 235 1.72e+01 1ooeA 236 1.86e+01 c.2.1.2 87196 1g3qA 237 2.06e+01 1hyqA c.37.1.10 60237 1tfr 305 2.17e+01 1tfr a.60.7.1,c.120.1.2 18081,33351 2faoA 309 2.24e+01 1s3zA 165 2.26e+01 d.108.1.1 105250 1ko6A 187 2.30e+01 b.119.1.1 77471 1odkA 235 2.39e+01 c.56.2.1 86863 2c1lA 358 2.47e+01 1pot 325 2.55e+01 1pot c.94.1.1 35807 1vheA 373 2.66e+01 b.49.3.1,c.56.5.4 100669,100670 1szqA 483 2.69e+01 e.44.1.1 99045 1oqvA 192 2.78e+01 d.24.1.2 87320 2ffuA 501 2.83e+01 1fxoA 293 2.86e+01 1g0rA c.68.1.6 34524 1ve0A 134 2.88e+01 1wi1A 126 2.90e+01 1yloA 348 2.95e+01 1gegA 256 2.97e+01 1ybvA c.2.1.2 29888 1cvrA 435 3.00e+01 1cvrA b.1.18.12,c.17.1.2 21949,31006 1pvvA 315 3.00e+01 c.78.1.1,c.78.1.1 95190,95191 1pcfA 66 3.01e+01 1pcfA d.18.1.1 38142 2an9A 207 3.01e+01 1g55A 343 3.06e+01 1g55A c.66.1.26 34247 1ht6A 405 3.06e+01 b.71.1.1,c.1.8.1 83629,83630 1xwyA 264 3.11e+01 1xc3A 302 3.12e+01 1tvfA 369 3.24e+01 b.105.1.2,e.3.1.1 107358,107359 2f5gA 133 3.31e+01 1zejA 293 3.31e+01 2a5yB 549 3.36e+01 1yp2A 451 3.37e+01 1x7oA 287 3.44e+01 1v60A 123 3.46e+01 1kyhA 276 3.46e+01 c.72.1.4 73222 1n4qB 377 3.46e+01 a.102.4.3 91636 1q1aA 289 3.48e+01 c.31.1.5 95561 2g2cA 167 3.51e+01 1kt6A 183 3.53e+01 b.60.1.1 84466 1d8wA 426 3.64e+01 1de5A c.1.15.2 29394 1geqA 248 3.71e+01 2tysA c.1.2.4 28589 1wduA 245 3.73e+01 d.151.1.1 109286 1y9aA 360 3.78e+01 2ez3A 302 3.89e+01 1w96A 554 3.89e+01 2bo4A 397 4.12e+01 1dekA 241 4.19e+01 1dekA c.37.1.1 31842 2ew8A 249 4.21e+01 1s2dA 167 4.29e+01 c.23.14.1 98377 1wvqA 167 4.33e+01 1rwzA 245 4.33e+01 d.131.1.2,d.131.1.2 98005,98006 1okgA 373 4.36e+01 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1h1nA 305 4.37e+01 c.1.8.3 70855 1y5oA 115 4.45e+01 1ywxA 102 4.47e+01 1wjuA 100 4.48e+01 1tzjA 338 4.49e+01 1xx1A 285 4.59e+01 2a1iA 146 4.60e+01 1bykA 255 4.65e+01 1bykA c.93.1.1 35706 1wdjA 187 4.70e+01 1jmsA 381 4.71e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1dgwY 93 4.85e+01 1caxB 1u2wA 122 5.00e+01 2bsxA 253 5.03e+01 1m7gA 211 5.11e+01 c.37.1.4 78724 2f4nA 273 5.15e+01 1twfK 120 5.20e+01 1erw 105 5.28e+01 1erv c.47.1.1 32745 1o3yA 166 5.37e+01 c.37.1.8 86618 2fsrA 195 5.46e+01 2bikB 313 5.59e+01 1e6uA 321 5.63e+01 1bsvA c.2.1.2 29805 1jcfA 344 5.64e+01 c.55.1.1,c.55.1.1 62878,62879 1j27A 102 5.76e+01 d.58.50.1 90778 1ob8A 135 5.80e+01 2akoA 251 5.84e+01 1r8sA 164 5.90e+01 c.37.1.8 97247 1jmtA 104 6.01e+01 d.58.7.3 63180 2ab5A 269 6.01e+01 1rdfA 267 6.07e+01 c.108.1.3 104884 1j79A 347 6.07e+01 1j79A c.1.9.4 62675 2ajrA 331 6.08e+01 1wdvA 152 6.12e+01 1vjeA 166 6.14e+01 d.185.1.2 100807 1ftrA 296 6.16e+01 1ftrA d.58.33.1,d.58.33.1 39485,39486 1ll2A 333 6.18e+01 c.68.1.14 74005 1wn5A 130 6.30e+01 1e12A 253 6.31e+01 1c3wA f.13.1.1 43428 1xewY 172 6.34e+01 1i88A 389 6.34e+01 c.95.1.2,c.95.1.2 66070,66071 1dqpA 230 6.47e+01 1dqnA c.61.1.1 34069 1bdfA 235 6.48e+01 1bdfA d.74.3.1,d.181.1.1 39727,42602 1sviA 195 6.51e+01 c.37.1.8 106048 2cxcA 144 6.52e+01 1in0A 163 6.56e+01 d.58.49.1,d.58.49.1 83694,83695 1m1hA 248 6.61e+01 b.114.1.1,d.58.42.1 78415,78416 1i9gA 280 6.65e+01 c.66.1.13 62090 1pc6A 146 6.75e+01 d.262.1.1 94430 1tljA 213 6.76e+01 d.282.1.1 107126 1mqiA 263 6.79e+01 c.94.1.1 91398 1qe5A 266 6.88e+01 1b8oA c.56.2.1 33784 2cr4A 126 7.00e+01 1xreA 217 7.00e+01 2ca6A 386 7.01e+01 1s96A 219 7.04e+01 c.37.1.1 98740 2fiqA 420 7.05e+01 1ec7A 446 7.06e+01 1bqg c.1.11.2,d.54.1.1 29218,38862 2arhA 203 7.16e+01 1tedA 393 7.24e+01 c.95.1.2 106807 1fxlA 167 7.26e+01 1b7fA d.58.7.1,d.58.7.1 39183,39184 1xg8A 111 7.26e+01 1t8tA 271 7.30e+01 c.37.1.5 106685 1t3tA 1303 7.34e+01 a.5.10.1,c.23.16.1,d.284.1.2,d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 106381,106382,106383,106384,106385,106386,106387 1senA 164 7.36e+01 c.47.1.1 105465 1u8sA 192 7.40e+01 d.58.18.5,d.58.18.5 107737,107738 1id1A 153 7.49e+01 1id1A c.2.1.9 62286 1wy7A 207 7.49e+01 1ysrA 150 7.54e+01 1l2tA 235 7.61e+01 c.37.1.12 73514 1y42X 392 7.63e+01 1ia9A 280 7.84e+01 1ia9A d.144.1.5 62113 2choA 716 7.86e+01 1j1lA 290 7.92e+01 b.82.1.12 90766 1efpB 252 7.99e+01 1efvB c.26.2.3 31636 1fvgA 199 8.13e+01 1fvaA d.58.28.1 39408 1ohlA 342 8.16e+01 c.1.10.3 87035 1wstA 417 8.21e+01 1i12A 160 8.26e+01 1i21A d.108.1.1 61515 1zpvA 91 8.31e+01 1mzbA 136 8.44e+01 a.4.5.42 91497 1nrzA 164 8.56e+01 c.38.1.1 86131 1vqsA 116 8.59e+01 2chnA 716 8.63e+01 1jykA 254 8.64e+01 c.68.1.13 67458 1t0fA 276 8.65e+01 2di4A 238 8.66e+01 1v8hA 107 8.82e+01 2ao9A 155 8.82e+01 1sw6A 327 8.86e+01 1sw6A d.211.1.1 19176 1j0dA 341 8.87e+01 c.79.1.1 83902 1ru3A 732 8.87e+01 e.26.1.3 97835 1qjcA 158 8.88e+01 1b6tA c.26.1.3 63328 1vi4A 174 8.89e+01 c.8.7.1 100731 1g2rA 100 8.91e+01 1g2rA d.192.1.1 60231 2c60A 111 8.92e+01 1vhoA 346 8.94e+01 b.49.3.1,c.56.5.4 100694,100695 1erv 105 8.99e+01 1erv c.47.1.1 32743