# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1wqaA 455 8.71e-03 2dbbA 151 9.96e-02 1bqk 124 5.37e-01 1bqk b.6.1.1 22889 2al2A 436 6.60e-01 1uirA 314 7.73e-01 c.66.1.17 99429 2al1A 436 8.06e-01 1oneA 436 8.22e-01 4enl c.1.11.1,d.54.1.1 29200,38844 1e9rA 437 1.28e+00 c.37.1.11 64827 1qo0D 196 1.50e+00 1qo0D c.23.1.3 31125 1ymqA 261 1.93e+00 2fckA 181 2.10e+00 2akzA 439 2.31e+00 2ffuA 501 2.42e+00 2g5cA 281 2.75e+00 1v60A 123 3.12e+00 1qysA 106 3.24e+00 k.41.1.1 96603 1vp4A 425 3.56e+00 1gegA 256 3.61e+00 1ybvA c.2.1.2 29888 1u7lA 392 3.79e+00 2b0jA 358 3.90e+00 1yb0A 159 3.93e+00 1ko6A 187 4.19e+00 b.119.1.1 77471 1fcyA 236 4.39e+00 2lbd a.123.1.1 19282 1x7oA 287 4.62e+00 3pmgA 561 4.67e+00 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 2f5gA 133 4.68e+00 1d3yA 301 4.70e+00 1d3yA e.12.1.1 43252 1w77A 228 4.82e+00 1jztA 246 5.01e+00 c.104.1.1 63319 2av4A 162 5.04e+00 1b8oA 284 5.69e+00 1b8oA c.56.2.1 33762 1w6uA 302 5.80e+00 1wduA 245 6.05e+00 d.151.1.1 109286 1tfr 305 6.12e+00 1tfr a.60.7.1,c.120.1.2 18081,33351 2arhA 203 6.18e+00 1lvwA 295 6.43e+00 c.68.1.6 84723 1sviA 195 6.50e+00 c.37.1.8 106048 1xwyA 264 6.65e+00 1ryiA 382 6.66e+00 2cw5A 255 7.18e+00 1vggA 161 7.87e+00 1m1hA 248 7.99e+00 b.114.1.1,d.58.42.1 78415,78416 1i9gA 280 8.02e+00 c.66.1.13 62090 1mzbA 136 8.45e+00 a.4.5.42 91497 1tcvA 287 8.54e+00 1yovA 537 8.81e+00 1r5tA 142 1.00e+01 c.97.1.1 104812 1rwzA 245 1.01e+01 d.131.1.2,d.131.1.2 98005,98006 2a5dA 175 1.02e+01 1vjeA 166 1.02e+01 d.185.1.2 100807 1qe5A 266 1.11e+01 1b8oA c.56.2.1 33784 1wjuA 100 1.13e+01 2an9A 207 1.20e+01 1pvvA 315 1.22e+01 c.78.1.1,c.78.1.1 95190,95191 1pzxA 289 1.25e+01 c.119.1.1 95484 1r5lA 262 1.26e+01 a.5.3.1,c.13.1.1 97099,97100 1o3yA 166 1.30e+01 c.37.1.8 86618 1s3zA 165 1.33e+01 d.108.1.1 105250 1f35A 162 1.35e+01 1f35A b.94.1.1 59628 1k8rB 110 1.40e+01 d.15.1.5 72180 1sjiA 350 1.45e+01 1zu4A 320 1.48e+01 1zejA 293 1.49e+01 1bykA 255 1.52e+01 1bykA c.93.1.1 35706 1odkA 235 1.53e+01 c.56.2.1 86863 1oz9A 150 1.57e+01 d.92.1.15 93808 1pcfA 66 1.59e+01 1pcfA d.18.1.1 38142 2fsrA 195 1.60e+01 1ftrA 296 1.63e+01 1ftrA d.58.33.1,d.58.33.1 39485,39486 1wi1A 126 1.64e+01 2faoA 309 1.67e+01 2cx5A 158 1.70e+01 2g2cA 167 1.74e+01 1n4qB 377 1.80e+01 a.102.4.3 91636 1qahA 136 1.80e+01 d.79.1.1 96338 1kv7A 488 1.84e+01 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 1f2tB 148 1.85e+01 1f2tB 1lc5A 364 1.86e+01 c.67.1.1 73827 1wvfA 520 1.87e+01 1ve0A 134 1.90e+01 1z0sA 278 1.92e+01 2ab5A 269 1.92e+01 1y9aA 360 1.93e+01 1wdjA 187 1.93e+01 1sw6A 327 1.93e+01 1sw6A d.211.1.1 19176 1ooeA 236 1.95e+01 c.2.1.2 87196 1oxxK 353 1.96e+01 b.40.6.3,c.37.1.12 93715,93716 1kt6A 183 1.99e+01 b.60.1.1 84466 1g55A 343 2.02e+01 1g55A c.66.1.26 34247 1g63A 181 2.04e+01 1g5qA c.34.1.1 60299 2bo4A 397 2.05e+01 1fo8A 343 2.06e+01 1foaA c.68.1.10 59927 1oqvA 192 2.09e+01 d.24.1.2 87320 1j27A 102 2.15e+01 d.58.50.1 90778 1r8sA 164 2.17e+01 c.37.1.8 97247 2av5A 120 2.20e+01 1ursA 402 2.22e+01 c.94.1.1 99833 2fuvA 549 2.24e+01 1yloA 348 2.26e+01 1s96A 219 2.26e+01 c.37.1.1 98740 1yp2A 451 2.29e+01 1i60A 278 2.30e+01 c.1.15.4 71118 1wz8A 264 2.36e+01 1v8hA 107 2.36e+01 2bsxA 253 2.39e+01 1geqA 248 2.47e+01 2tysA c.1.2.4 28589 1u2zA 433 2.57e+01 c.66.1.31 107626 1fvgA 199 2.60e+01 1fvaA d.58.28.1 39408 1nrzA 164 2.63e+01 c.38.1.1 86131 1rq2A 382 2.65e+01 c.32.1.1,d.79.2.1 105048,105049 1tljA 213 2.81e+01 d.282.1.1 107126 2fqxA 318 2.83e+01 1in0A 163 2.89e+01 d.58.49.1,d.58.49.1 83694,83695 2glfA 450 2.91e+01 2f4nA 273 3.02e+01 1ohtA 215 3.02e+01 d.118.1.1 87036 1yr2A 741 3.03e+01 1ztuA 341 3.05e+01 1jmtA 104 3.09e+01 d.58.7.3 63180 2cviA 83 3.10e+01 1dceB 331 3.11e+01 1dceB a.102.4.3 18872 2fiqA 420 3.12e+01 1j0dA 341 3.12e+01 c.79.1.1 83902 1xewY 172 3.20e+01 1mzgA 146 3.22e+01 d.224.1.1 79696 1quqB 121 3.23e+01 1quqB b.40.4.3 25305 1kyhA 276 3.23e+01 c.72.1.4 73222 1o7nA 449 3.27e+01 b.33.1.2,d.129.3.3 81162,81163 1vr9A 213 3.29e+01 1r6xA 395 3.34e+01 b.122.1.3,c.26.1.5 97167,97168 1ru3A 732 3.35e+01 e.26.1.3 97835 1ia9A 280 3.36e+01 1ia9A d.144.1.5 62113 1zpvA 91 3.43e+01 1d8wA 426 3.44e+01 1de5A c.1.15.2 29394 2b4aA 138 3.48e+01 1u2wA 122 3.49e+01 1kk1A 410 3.53e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1cl8A 276 3.54e+01 1ckqA c.52.1.1 33230 1vheA 373 3.56e+01 b.49.3.1,c.56.5.4 100669,100670 1o9gA 250 3.57e+01 c.66.1.29 86692 1wstA 417 3.60e+01 1iuz 98 3.61e+01 1plc b.6.1.1 22861 1qwdA 177 3.63e+01 b.60.1.1 96471 1q9uA 130 3.63e+01 d.129.7.1 96314 2bfwA 200 3.64e+01 1zd9A 188 3.64e+01 2cxcA 144 3.64e+01 1wdvA 152 3.65e+01 1bazA 53 3.68e+01 1bazA a.43.1.1 17421 1hynP 379 3.74e+01 1hynP d.112.1.2 61408 1ht6A 405 3.78e+01 b.71.1.1,c.1.8.1 83629,83630 1iq8A 582 3.85e+01 c.1.20.1,b.122.1.1,d.17.6.1 71270,83074,83075 1yc5A 246 3.86e+01 1pot 325 3.87e+01 1pot c.94.1.1 35807 1id1A 153 3.91e+01 1id1A c.2.1.9 62286 2erfA 209 4.01e+01 1l0wA 580 4.02e+01 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1t8tA 271 4.04e+01 c.37.1.5 106685 1w8sA 263 4.07e+01 2gcfA 73 4.13e+01 1yzfA 195 4.13e+01 1np7A 489 4.17e+01 a.99.1.1,c.28.1.1 80677,80678 1g3qA 237 4.19e+01 1hyqA c.37.1.10 60237 1vhwA 253 4.22e+01 c.56.2.1 100706 1okgA 373 4.23e+01 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1wyzA 242 4.24e+01 2ez3A 302 4.25e+01 1z7xW 461 4.25e+01 2aa4A 289 4.26e+01 1e8cA 498 4.28e+01 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1jysA 242 4.33e+01 c.56.2.1 77216 1kicA 339 4.34e+01 c.70.1.1 72510 2c0nA 203 4.34e+01 1l2tA 235 4.41e+01 c.37.1.12 73514 1q4rA 112 4.42e+01 d.58.4.4 95823 2bitX 165 4.45e+01 1v7zA 260 4.46e+01 c.125.1.1 100488 1bdfA 235 4.50e+01 1bdfA d.74.3.1,d.181.1.1 39727,42602 1ws0A 156 4.55e+01 2akoA 251 4.57e+01 1s14A 194 4.60e+01 d.122.1.2 98329 1t3tA 1303 4.61e+01 a.5.10.1,c.23.16.1,d.284.1.2,d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 106381,106382,106383,106384,106385,106386,106387 1ec7A 446 4.64e+01 1bqg c.1.11.2,d.54.1.1 29218,38862 1i2aA 219 4.64e+01 e.24.1.1 90660 1jndA 420 4.68e+01 c.1.8.5,d.26.3.1 71757,71758 2gnxA 365 4.75e+01 1s4iA 175 4.76e+01 1c0pA 363 4.80e+01 1an9A c.4.1.2,d.16.1.3 30647,37934 1zhhB 242 4.94e+01 1wa3A 205 5.01e+01 1t0fA 276 5.02e+01 1eu8A 409 5.05e+01 1eu8A c.94.1.1 59502 1m7gA 211 5.08e+01 c.37.1.4 78724 1ufwA 95 5.09e+01 d.58.7.1 99358 1cvrA 435 5.11e+01 1cvrA b.1.18.12,c.17.1.2 21949,31006 1wvqA 167 5.14e+01 2gcuA 245 5.14e+01 2cxxA 190 5.15e+01 1xg8A 111 5.17e+01 1y81A 138 5.21e+01 2es7A 142 5.24e+01 1yxmA 303 5.25e+01 1fxlA 167 5.25e+01 1b7fA d.58.7.1,d.58.7.1 39183,39184 1sqsA 242 5.31e+01 c.23.5.5 98968 1szqA 483 5.34e+01 e.44.1.1 99045 1tqjA 230 5.35e+01 c.1.2.2 107228 1cseI 71 5.36e+01 1egpA d.40.1.1 38559 1o66A 275 5.38e+01 c.1.12.8 92547 1p77A 272 5.39e+01 c.2.1.7,c.58.1.5 94214,94215 1zud1 251 5.42e+01 1zbsA 291 5.48e+01 1g0cA 364 5.48e+01 7a3hA c.1.8.3 60165 2atzA 180 5.57e+01 3sdhA 146 5.62e+01 3sdhA a.1.1.2 14984 2a7mA 250 5.64e+01 1tuaA 191 5.64e+01 d.51.1.1,d.51.1.1 107321,107322 1tvfA 369 5.66e+01 b.105.1.2,e.3.1.1 107358,107359 1rhs 296 5.71e+01 1rhs c.46.1.2,c.46.1.2 32703,32704 1hfc 169 5.71e+01 1hfc d.92.1.11 40335 1j1lA 290 5.73e+01 b.82.1.12 90766 1pyoA 167 5.80e+01 c.17.1.1 95370 1e6uA 321 5.81e+01 1bsvA c.2.1.2 29805 1z6nA 167 5.82e+01 1xahA 354 5.87e+01 2dlbA 80 5.87e+01 2a1iA 146 5.88e+01 1bj7 156 5.90e+01 1bj7 b.60.1.1 27113 2g40A 224 5.91e+01 1jmsA 381 5.99e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1yckA 175 6.06e+01 1twfK 120 6.07e+01 2beiA 170 6.16e+01 2c1lA 358 6.17e+01 2ew8A 249 6.19e+01 1gs5A 258 6.20e+01 c.73.1.2 70395 1wy7A 207 6.24e+01 1v02A 565 6.27e+01 c.1.8.4 108194 1ywxA 102 6.28e+01 7odcA 424 6.40e+01 7odcA b.49.2.3,c.1.6.1 26488,28650 1zndA 174 6.42e+01 1sgwA 214 6.43e+01 c.37.1.12 105541 1f6yA 262 6.46e+01 1f6yA c.1.21.2 29673 1k7jA 206 6.46e+01 d.115.1.1 72103 1m0dA 138 6.47e+01 c.52.1.17 74354 1i52A 236 6.52e+01 1i52A c.68.1.13 61767 1y5eA 169 6.55e+01 1w2fA 276 6.55e+01 d.143.1.3 109125 1q0uA 219 6.57e+01 c.37.1.19 95512 2cygA 312 6.66e+01 1w96A 554 6.70e+01 2bj7A 138 6.77e+01 1vecA 206 6.82e+01 c.37.1.19 100575 2b7kA 200 6.89e+01 1whsA 255 6.96e+01 1ivyA c.69.1.5 34649 1g2rA 100 6.99e+01 1g2rA d.192.1.1 60231 1oc2A 348 7.00e+01 c.2.1.2 92765 1nf2A 268 7.07e+01 c.108.1.10 91849 1lfpA 249 7.17e+01 e.39.1.1 73885 1lbu 213 7.26e+01 1lbu a.20.1.1,d.65.1.1 16416,39549 1qjcA 158 7.29e+01 1b6tA c.26.1.3 63328 2ao9A 155 7.33e+01 2a0mA 316 7.34e+01 1pmy 123 7.44e+01 1bqk b.6.1.1 22888 1u11A 182 7.47e+01 c.23.8.1 107576 1e6yC 247 7.47e+01 1mroC d.58.31.1 39441 1r6uA 437 7.53e+01 c.26.1.1 97163 1om1A 332 7.56e+01 d.144.1.7 93347 1auiB 169 7.56e+01 1auiB a.39.1.5 17325 1rkuA 206 7.58e+01 c.108.1.11 97627 1z4rA 168 7.63e+01 1vd6A 224 7.63e+01 1yzvA 204 7.77e+01 1vehA 92 7.79e+01 1uc8A 280 7.86e+01 c.30.1.6,d.142.1.7 99165,99166 1wcgA 464 7.88e+01 1y8qA 346 7.94e+01 1he7A 126 7.98e+01 1wwcA b.1.1.4 60970 1n5nA 180 7.98e+01 d.167.1.1 85336 1on0A 158 8.02e+01 d.108.1.1 87095 1uk8A 282 8.04e+01 c.69.1.10 107907 1tzjA 338 8.04e+01 2cfxA 144 8.07e+01 1i88A 389 8.09e+01 c.95.1.2,c.95.1.2 66070,66071 2g2dA 193 8.11e+01 1ng6A 148 8.17e+01 a.182.1.1 85670 1xx1A 285 8.17e+01 1utcA 363 8.18e+01 a.118.1.4,b.69.6.1 99914,99915 1ysrA 150 8.21e+01 1mml 265 8.25e+01 1mml e.8.1.2 43015 1wwzA 159 8.28e+01 2f1fA 164 8.29e+01 1wh5A 80 8.33e+01 1o4yA 288 8.34e+01 b.29.1.2 92473 1qy1A 174 8.37e+01 b.60.1.1 96568 1ub3A 220 8.39e+01 c.1.10.1 88395 1y93A 159 8.42e+01 1wj9A 211 8.43e+01 2c60A 111 8.44e+01 1fcdA 401 8.44e+01 1fcdA c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 1suwA 249 8.56e+01 e.52.1.1 106027 1i12A 160 8.59e+01 1i21A d.108.1.1 61515 2d0oA 610 8.60e+01 1xc1A 309 8.62e+01 c.94.1.1 109543 1ffyA 917 8.69e+01 1qu2A a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 1m1fA 110 8.74e+01 b.34.6.2 78401 1xrtA 467 8.77e+01 1b3aA 67 8.77e+01 1b3aA d.9.1.1 37410 1svy 114 8.80e+01 1svy d.109.1.1 40831 1xo0A 324 8.85e+01 1oo0B 110 8.88e+01 d.58.7.1 87183 2fliA 220 8.93e+01 1ztdA 133 8.97e+01