# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1wqaA	455	2.70e-01			
2f94F	350	4.37e-01			
1a6q	382	9.48e-01	1a6q	a.159.1.1,d.219.1.1	75801,75802
1wdtA	665	2.79e+00			
1vkhA	273	3.47e+00		c.69.1.32	108662
1wvfA	520	4.49e+00			
1w44A	331	1.03e+01			
1tkkA	366	1.14e+01		c.1.11.2,d.54.1.1	107089,107090
1xi3A	215	1.22e+01		c.1.3.1	109601
1xc3A	302	1.51e+01			
1wqwA	235	1.55e+01			
1bqk	124	1.68e+01	1bqk	b.6.1.1	22889
1v6tA	255	1.87e+01			
2a7mA	250	2.65e+01			
1kt6A	183	2.67e+01		b.60.1.1	84466
1yeyA	444	2.68e+01			
1jnrA	643	2.68e+01		a.7.3.1,c.3.1.4,d.168.1.1	66966,66967,66968
1fcyA	236	2.92e+01	2lbd	a.123.1.1	19282
1n67A	359	3.04e+01		b.2.3.4,b.2.3.4	85354,85355
1epxA	370	3.24e+01	1fbaA	c.1.10.1	29150
2fjbA	643	3.34e+01			
1y1pA	342	3.39e+01			
1q77A	138	3.71e+01		c.26.2.4	96023
1ia9A	280	4.36e+01	1ia9A	d.144.1.5	62113
1r5lA	262	4.99e+01		a.5.3.1,c.13.1.1	97099,97100
1yjsA	419	4.99e+01			
1kbvA	327	5.06e+01		b.6.1.3,b.6.1.3	68395,68396
1h05A	146	5.13e+01		c.23.13.1	76433
1ubkL	534	5.17e+01		e.18.1.1	88422
1pot	325	5.30e+01	1pot	c.94.1.1	35807
1vlbA	907	5.30e+01		a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1	108739,108740,108741,108742
1t07A	94	5.32e+01		d.279.1.1	106196
1wxrA	1048	5.38e+01			
1syyA	346	5.47e+01		a.25.1.2	106126
1gvnA	90	5.55e+01		a.8.2.1	76353
1l1lA	739	5.59e+01		c.7.1.4	73470
1rp4A	389	5.60e+01		a.227.1.1	105027
1b8oA	284	5.75e+01	1b8oA	c.56.2.1	33762
1pb7A	292	5.82e+01		c.94.1.1	88025
1l2tA	235	5.96e+01		c.37.1.12	73514
1uptB	60	6.23e+01		a.193.1.1	99768
1fseA	74	6.24e+01	1fseA	a.4.6.2	60000
1n40A	396	6.30e+01		a.104.1.1	79977
2fu2A	102	6.34e+01			
2c46A	241	6.39e+01			
1zpvA	91	6.51e+01			
2bitX	165	7.03e+01			
1qgdA	662	7.04e+01		c.36.1.6,c.36.1.10,c.48.1.1	88367,88368,88369
1wrvA	308	7.15e+01			
1kl1A	419	7.26e+01		c.67.1.4	72663
2cqsA	842	7.70e+01			
1wdeA	294	7.78e+01			
2b99A	156	8.00e+01			
1auiB	169	8.19e+01	1auiB	a.39.1.5	17325
1t2bA	397	8.20e+01			
1e3dA	266	8.63e+01	2frvA	e.19.1.1	59188
1wuiL	534	8.70e+01			
1wddA	477	8.73e+01			
1z41A	338	8.78e+01			
1wj9A	211	8.97e+01			
1w18A	493	8.98e+01			
1vr5A	547	9.00e+01