# List of top-scoring protein chains for T0356.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1wqaA 455 1.22e+00 1k8rB 110 5.16e+00 d.15.1.5 72180 2fu0A 160 6.37e+00 1i35A 95 1.03e+01 d.15.1.5 66017 1tpvA 247 1.46e+01 1amk c.1.1.1 28443 1tpwA 247 1.52e+01 1amk c.1.1.1 28449 1tpc1 247 1.55e+01 1amk 1fd0A 235 1.62e+01 a.123.1.1 76164 1fcyA 236 1.63e+01 2lbd a.123.1.1 19282 1exaA 246 1.67e+01 2lbd a.123.1.1 19285 1ybyA 215 1.68e+01 2lbd 267 1.71e+01 2lbd a.123.1.1 19287 1j0dA 341 2.01e+01 c.79.1.1 83902 1tph1 247 2.05e+01 1amk 1tpuA 247 2.05e+01 1amk c.1.1.1 28441 1spqA 247 2.06e+01 c.1.1.1 105878 1su5A 247 2.08e+01 c.1.1.1 106020 1sw7A 248 2.09e+01 c.1.1.1 106073 1sw3A 248 2.11e+01 c.1.1.1 106065 1tpb1 247 2.12e+01 1amk 1ssdA 247 2.14e+01 c.1.1.1 105979 1sq7A 247 2.15e+01 c.1.1.1 105886 1sw0A 248 2.16e+01 c.1.1.1 106060 1of5B 184 2.29e+01 d.17.4.2 86934 1lb8A 263 2.74e+01 c.94.1.1 73800 1p1wA 263 2.80e+01 c.94.1.1 87713 1szqA 483 2.96e+01 e.44.1.1 99045 1s1iV 148 2.96e+01 i.1.1.1 105196 1zu4A 320 3.12e+01 2eueA 275 3.52e+01 2fh9A 274 3.53e+01 1xapA 267 3.59e+01 1f2dA 341 3.82e+01 1f2dA c.79.1.1 35298 1xdkB 303 3.83e+01 1j0eA 341 3.87e+01 c.79.1.1 83906 1ftkA 279 4.02e+01 1gr2A c.94.1.1 35819 1timA 247 4.06e+01 1amk c.1.1.1 28453 1ymqA 261 4.21e+01 1fzyA 149 4.35e+01 d.20.1.1 65072 2b7kA 200 4.59e+01 1dkfB 235 4.73e+01 2lbd a.123.1.1 19281 2ahoA 414 5.00e+01 1lbcA 263 5.07e+01 c.94.1.1 73805 1dekA 241 5.09e+01 1dekA c.37.1.1 31842 1rioA 98 5.14e+01 a.35.1.2 97513 1hd0A 75 5.33e+01 1ha1 d.58.7.1 39188 2anjA 263 5.33e+01 1lbbA 263 5.41e+01 c.94.1.1 73804 1pybA 111 5.57e+01 b.40.4.4 95330 1r74A 294 5.57e+01 c.66.1.5 104828 1mqdA 261 5.59e+01 c.94.1.1 85049 1mqiA 263 5.60e+01 c.94.1.1 91398 1p1oA 263 5.67e+01 c.94.1.1 87699 1m5dA 263 5.96e+01 c.94.1.1 78641 1mqhA 263 5.97e+01 c.94.1.1 91397 2fv1A 377 6.05e+01 1fps 348 6.06e+01 1uby a.128.1.1 19436 1yf9A 171 6.34e+01 2an9A 207 6.47e+01 1s96A 219 6.59e+01 c.37.1.1 98740 1vimA 200 6.68e+01 c.80.1.3 100758 2d27A 149 6.70e+01 1z10A 476 6.76e+01 2d28C 149 6.81e+01 2fuzA 377 6.96e+01 1bvwA 360 7.38e+01 1bvwA c.6.1.1 30668 1gz1A 362 7.40e+01 c.6.1.1 76405 2bvwA 362 7.41e+01 1bvwA c.6.1.1 30666 1oc7A 364 7.41e+01 c.6.1.1 86794 1ocjA 362 7.41e+01 c.6.1.1 86801 1quwA 105 7.46e+01 1thx c.47.1.1 32735 1tteA 215 7.66e+01 a.5.2.1,d.20.1.1 107295,107296 1rzuA 485 7.67e+01 c.87.1.8 105140 1nw2A 105 7.77e+01 c.47.1.1 92215 1v7pC 200 7.91e+01 c.62.1.1 108408 2b99A 156 8.15e+01 1wdtA 665 8.26e+01 1n40A 396 8.32e+01 a.104.1.1 79977 1aoxA 203 8.43e+01 1aoxA c.62.1.1 34151 1rflA 172 8.54e+01 c.37.1.8 97384 1di1A 300 8.57e+01 1di1A a.128.1.4 19446 1un6B 87 8.72e+01 g.37.1.1,g.37.1.1,g.37.1.1 99649,99650,99651 1pavA 78 8.74e+01 d.68.3.3 88013 1n8lA 89 8.97e+01 a.28.1.1 85421