# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1wqaA 455 1.07e-01 1vp4A 425 1.26e+00 1yb0A 159 1.62e+00 1ymqA 261 1.78e+00 1dar 691 2.91e+00 1dar b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1 25707,32142,37547,39300 1qo0D 196 3.48e+00 1qo0D c.23.1.3 31125 1phk 298 3.65e+00 1cdkA d.144.1.7 41635 1xahA 354 3.88e+00 2akzA 439 3.89e+00 4enl 436 3.92e+00 4enl c.1.11.1,d.54.1.1 29202,38846 1lvwA 295 3.96e+00 c.68.1.6 84723 2al2A 436 4.12e+00 1te6A 439 4.43e+00 c.1.11.1,d.54.1.1 106797,106798 1oneA 436 4.53e+00 4enl c.1.11.1,d.54.1.1 29200,38844 1k8rB 110 4.86e+00 d.15.1.5 72180 2al1A 436 4.96e+00 1lc5A 364 5.12e+00 c.67.1.1 73827 2fckA 181 5.17e+00 1bqk 124 5.54e+00 1bqk b.6.1.1 22889 1ng4A 390 6.33e+00 c.3.1.2,d.16.1.3 85666,85667 1vggA 161 6.39e+00 1amy 403 6.56e+00 1jdc b.71.1.1,c.1.8.1 27799,28786 1ryiA 382 6.64e+00 1vl6A 388 6.95e+00 c.2.1.7,c.58.1.3 108724,108725 1e9rA 437 7.15e+00 c.37.1.11 64827 1w1wA 430 7.18e+00 1fezA 256 7.50e+00 1fezA c.108.1.3 43343 1d8wA 426 7.55e+00 1de5A c.1.15.2 29394 1bo1A 416 7.60e+00 1bo1A d.143.1.2 41591 1r5tA 142 7.94e+00 c.97.1.1 104812 1aszB 490 8.39e+00 1b8aA b.40.4.1,d.104.1.1 25241,40762 1avaA 403 8.70e+00 1jdc b.71.1.1,c.1.8.1 27797,28784 1w77A 228 9.22e+00 1wqwA 235 9.36e+00 2a7mA 250 9.58e+00 1qysA 106 9.81e+00 k.41.1.1 96603 1fo8A 343 1.00e+01 1foaA c.68.1.10 59927 1wnlA 235 1.06e+01 1d3yA 301 1.10e+01 1d3yA e.12.1.1 43252 1uirA 314 1.11e+01 c.66.1.17 99429 1u7lA 392 1.12e+01 1fsz 372 1.20e+01 1fsz c.32.1.1,d.79.2.1 31750,39802 2ffuA 501 1.21e+01 1ri7A 171 1.29e+01 a.4.5.32,d.58.4.2 97504,97505 1a4yA 460 1.31e+01 1a4yA c.10.1.1 30852 2g5cA 281 1.31e+01 2dbbA 151 1.31e+01 1eg9A 449 1.55e+01 1ndoA b.33.1.2,d.129.3.3 24443,41322 1o7nA 449 1.55e+01 b.33.1.2,d.129.3.3 81162,81163 1f2tB 148 1.60e+01 1f2tB 1yc5A 246 1.67e+01 1b8oA 284 1.70e+01 1b8oA c.56.2.1 33762 1fzyA 149 1.72e+01 d.20.1.1 65072 1r5lA 262 1.83e+01 a.5.3.1,c.13.1.1 97099,97100 2c1lA 358 1.89e+01 1fcyA 236 1.92e+01 2lbd a.123.1.1 19282 1oz9A 150 1.98e+01 d.92.1.15 93808 1em8A 147 2.05e+01 c.128.1.1 90457 1fa0A 537 2.08e+01 1fa0B d.58.16.1,a.160.1.1,d.218.1.3 39335,75837,75838 1szqA 483 2.11e+01 e.44.1.1 99045 1tfr 305 2.13e+01 1tfr a.60.7.1,c.120.1.2 18081,33351 1ursA 402 2.14e+01 c.94.1.1 99833 1wtaA 275 2.14e+01 1pdz 434 2.16e+01 4enl c.1.11.1,d.54.1.1 29215,38859 1yp2A 451 2.22e+01 1wdtA 665 2.24e+01 1rdfA 267 2.27e+01 c.108.1.3 104884 1wi1A 126 2.36e+01 1ht6A 405 2.36e+01 b.71.1.1,c.1.8.1 83629,83630 1bco 327 2.45e+01 1bco b.48.1.1,c.55.3.3 26431,33676 2eueA 279 2.62e+01 1z7xW 461 2.62e+01 1nx8A 273 2.68e+01 b.82.2.8 86374 1mp9A 198 2.71e+01 d.129.1.1,d.129.1.1 91385,91386 2gkeA 274 2.80e+01 1u1hA 765 2.81e+01 c.1.22.2,c.1.22.2 107580,107581 2a5dA 175 2.83e+01 1tcvA 287 2.87e+01 1wduA 245 2.87e+01 d.151.1.1 109286 1kepA 348 2.98e+01 c.2.1.2 68536 1pzxA 289 3.01e+01 c.119.1.1 95484 1wvqA 167 3.05e+01 1wstA 417 3.06e+01 2av5A 120 3.06e+01 1xwyA 264 3.10e+01 1q9uA 130 3.13e+01 d.129.7.1 96314 2faoA 309 3.14e+01 1np7A 489 3.15e+01 a.99.1.1,c.28.1.1 80677,80678 1ltoA 245 3.16e+01 b.47.1.2 84707 2an9A 207 3.16e+01 1swvA 267 3.17e+01 1zz1A 369 3.20e+01 2di4A 238 3.20e+01 1a0i 348 3.20e+01 1a0i b.40.4.6,d.142.2.1 25363,41577 1oc2A 348 3.26e+01 c.2.1.2 92765 1g55A 343 3.27e+01 1g55A c.66.1.26 34247 1hurA 180 3.29e+01 1hurA c.37.1.8 32052 1yr0A 175 3.32e+01 2f9nA 245 3.40e+01 2f4nA 273 3.47e+01 1eceA 358 3.52e+01 1eceA c.1.8.3 28813 1wn5A 130 3.65e+01 1pc6A 146 3.66e+01 d.262.1.1 94430 1pbgA 468 3.67e+01 1e70M c.1.8.4 28946 1fxoA 293 3.84e+01 1g0rA c.68.1.6 34524 1xbsA 149 3.91e+01 2bexA 460 3.95e+01 1yghA 164 4.08e+01 1yghA d.108.1.1 40802 2cw5A 255 4.15e+01 1u2wA 122 4.48e+01 2bkrA 212 4.63e+01 1o3yA 166 4.83e+01 c.37.1.8 86618 2f5gA 133 4.95e+01 1b7gO 340 5.00e+01 1b7gO c.2.1.3,d.81.1.1 29992,39907 1o4sA 389 5.02e+01 c.67.1.1 86620 2exrA 524 5.02e+01 1vkhA 273 5.02e+01 c.69.1.32 108662 1mqiA 263 5.05e+01 c.94.1.1 91398 1ooeA 236 5.06e+01 c.2.1.2 87196 1ve0A 134 5.09e+01 1y5oA 115 5.14e+01 1ift 263 5.23e+01 1mrj d.165.1.1 42211 1ftkA 279 5.28e+01 1gr2A c.94.1.1 35819 1fi4A 416 5.33e+01 1fi4A d.14.1.5,d.58.26.2 59847,59848 1r7aA 504 5.39e+01 b.71.1.1,c.1.8.1 97192,97193 1geqA 248 5.40e+01 2tysA c.1.2.4 28589 1g3qA 237 5.41e+01 1hyqA c.37.1.10 60237 1odkA 235 5.43e+01 c.56.2.1 86863 1a05A 358 5.52e+01 1cnzA c.77.1.1 35059 1lwjA 441 5.53e+01 b.71.1.1,c.1.8.1 74303,74304 2fuvA 549 5.71e+01 2ez6A 221 5.87e+01 1q1aA 289 5.92e+01 c.31.1.5 95561 1u1jA 765 5.98e+01 c.1.22.2,c.1.22.2 107590,107591 1ej1A 190 6.05e+01 1ejhA d.86.1.1 40144 1id1A 153 6.06e+01 1id1A c.2.1.9 62286 3pmgA 561 6.07e+01 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1ywxA 102 6.27e+01 1k2fA 190 6.38e+01 b.8.1.2 68054 1rqlA 267 6.40e+01 c.108.1.3 97750 2ew0A 192 6.41e+01 1o7zA 77 6.42e+01 d.9.1.1 86660 1n4qB 377 6.43e+01 a.102.4.3 91636 1j5yA 187 6.60e+01 a.4.5.1,d.94.2.1 71592,71593 1fcdA 401 6.71e+01 1fcdA c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 1i1dA 161 6.77e+01 1i21A d.108.1.1 61526 2bkqA 212 6.84e+01 1hbq 183 6.86e+01 1aqb b.60.1.1 27078 1vq3A 94 6.94e+01 1vi4A 174 6.99e+01 c.8.7.1 100731 1oqvA 192 7.05e+01 d.24.1.2 87320 2ajrA 331 7.06e+01 1rfmA 344 7.11e+01 c.122.1.1 97385 1efpB 252 7.14e+01 1efvB c.26.2.3 31636 1h5rA 293 7.18e+01 c.68.1.6 65623 1okgA 373 7.19e+01 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1wjuA 100 7.20e+01 1r8sA 164 7.28e+01 c.37.1.8 97247 1y9aA 360 7.35e+01 1w6tA 444 7.35e+01 1x7oA 287 7.37e+01 1nxiA 132 7.38e+01 d.58.47.1 86381 1j0dA 341 7.40e+01 c.79.1.1 83902 1wy7A 207 7.49e+01 1t3tA 1303 7.51e+01 a.5.10.1,c.23.16.1,d.284.1.2,d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 106381,106382,106383,106384,106385,106386,106387 1t8tA 271 7.51e+01 c.37.1.5 106685 1i12A 160 7.51e+01 1i21A d.108.1.1 61515 1zpvA 91 7.53e+01 1h1nA 305 7.54e+01 c.1.8.3 70855 1ypxA 375 7.56e+01 1xewY 172 7.58e+01 1bdfA 235 7.71e+01 1bdfA d.74.3.1,d.181.1.1 39727,42602 1kt6A 183 7.72e+01 b.60.1.1 84466 1s96A 219 7.78e+01 c.37.1.1 98740 2ab5A 269 7.82e+01 1yj7A 171 7.89e+01 1svy 114 7.91e+01 1svy d.109.1.1 40831 1i88A 389 8.05e+01 c.95.1.2,c.95.1.2 66070,66071 1ko6A 187 8.05e+01 b.119.1.1 77471 2bikB 313 8.15e+01 1bi5A 389 8.21e+01 1bi5A c.95.1.2,c.95.1.2 35985,35986 1cvrA 435 8.24e+01 1cvrA b.1.18.12,c.17.1.2 21949,31006 1nrfA 262 8.32e+01 e.3.1.1 92086 1euvB 86 8.33e+01 1a5r d.15.1.1 37598 1fvgA 199 8.34e+01 1fvaA d.58.28.1 39408 1sviA 195 8.42e+01 c.37.1.8 106048 2cxkA 95 8.43e+01 1g2rA 100 8.43e+01 1g2rA d.192.1.1 60231 1vkjA 285 8.55e+01 c.37.1.5 108666 1xwsA 313 8.55e+01 1tvfA 369 8.59e+01 b.105.1.2,e.3.1.1 107358,107359 2bo4A 397 8.64e+01 1s2dA 167 8.77e+01 c.23.14.1 98377 1pcfA 66 8.83e+01 1pcfA d.18.1.1 38142 1slqA 278 8.86e+01 f.47.1.1 105719 1tzjA 338 8.88e+01