# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1wqaA	455	1.76e+00			
1wdtA	665	3.13e+00			
1a6q	382	3.38e+00	1a6q	a.159.1.1,d.219.1.1	75801,75802
1jnrA	643	6.85e+00		a.7.3.1,c.3.1.4,d.168.1.1	66966,66967,66968
2fjbA	643	7.38e+00			
1wnlA	235	8.79e+00			
1wqwA	235	9.88e+00			
1w44A	331	2.15e+01			
1vkhA	273	2.76e+01		c.69.1.32	108662
2a7mA	250	2.81e+01			
1uby	367	2.97e+01	1uby	a.128.1.1	19435
1kt6A	183	3.06e+01		b.60.1.1	84466
1aqb	183	3.11e+01	1aqb	b.60.1.1	27084
2f94F	350	3.61e+01			
1wvfA	520	3.70e+01			
1hbq	183	3.73e+01	1aqb	b.60.1.1	27078
1k2fA	190	4.04e+01		b.8.1.2	68054
1ws6A	171	4.71e+01			
1yv5A	374	4.91e+01			
1yq7A	374	4.95e+01			
1ju2A	536	5.12e+01		c.3.1.2,d.16.1.1	77169,77170
2b99A	156	5.33e+01			
1dar	691	5.81e+01	1dar	b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1	25707,32142,37547,39300
1v5dA	386	5.92e+01			
1yeyA	444	6.02e+01			
1kbvA	327	6.05e+01		b.6.1.3,b.6.1.3	68395,68396
1nvmB	312	6.23e+01		c.2.1.3,d.81.1.1	86251,86252
1n67A	359	6.42e+01		b.2.3.4,b.2.3.4	85354,85355
1zjcA	418	6.66e+01			
1s0uA	408	6.67e+01		b.43.3.1,b.44.1.1,c.37.1.8	98302,98303,98304
1ymqA	261	6.69e+01			
1ctn	540	6.78e+01	1ctn	b.1.18.2,c.1.8.5,d.26.3.1	21876,29005,38439
1auiB	169	6.84e+01	1auiB	a.39.1.5	17325
1aocA	175	7.07e+01	1aocA	g.17.1.5	44817
2bx2L	517	7.17e+01			
1ytzT	107	7.21e+01			
1q77A	138	7.25e+01		c.26.2.4	96023
1d8wA	426	7.40e+01	1de5A	c.1.15.2	29394
1xi3A	215	7.47e+01		c.1.3.1	109601
2bitX	165	7.48e+01			
1y1pA	342	7.52e+01			
2fv1A	377	7.57e+01			
1edqA	540	7.89e+01	1ctn	b.1.18.2,c.1.8.5,d.26.3.1	21873,29002,38436
2cqsA	842	8.12e+01			
1bqk	124	8.65e+01	1bqk	b.6.1.1	22889
1w18A	493	8.68e+01			
2byjA	439	8.69e+01			
2a7oA	112	8.71e+01			
1bco	327	8.87e+01	1bco	b.48.1.1,c.55.3.3	26431,33676
1pb7A	292	8.93e+01		c.94.1.1	88025
1oatA	439	8.98e+01	2dkb	c.67.1.4	34461
1fcyA	236	8.99e+01	2lbd	a.123.1.1	19282