# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ejeA 192 1.05e+00 1ejeA b.45.1.2 25757 2tbd 134 1.51e+00 2tbd d.89.1.1 40241 1o8uA 257 2.46e+00 c.14.1.3 81194 1u0tA 307 2.51e+00 e.52.1.1 107567 1tbd 134 2.55e+00 2tbd d.89.1.1 40240 1szoA 257 3.27e+00 c.14.1.3 106164 1mkyA 439 5.49e+00 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1joa 447 6.46e+00 1nhp c.3.1.5,c.3.1.5,d.87.1.1 30563,30564,40203 1o22A 170 6.46e+00 d.238.1.1 86557 1k4mA 213 6.60e+00 c.26.1.3 77258 1nhp 447 6.96e+00 1nhp c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1fwyA 331 7.06e+00 1fwyA b.81.1.4,c.68.1.5 28064,34522 1k1gA 131 7.08e+00 d.51.1.1 68015 1nhs 447 8.07e+00 1nhp c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1ww9A 392 8.22e+00 1jfvA 131 1.01e+01 c.44.1.1 66654 1hv9A 456 1.08e+01 1fwyA b.81.1.4,c.68.1.5 28060,34518 1a6q 382 1.11e+01 1a6q a.159.1.1,d.219.1.1 75801,75802 1wleA 501 1.25e+01 2cu1A 103 1.26e+01 1eudA 311 1.40e+01 2scuA c.2.1.8,c.23.4.1 30312,31140 1iqoA 88 1.59e+01 d.214.1.1 71277 1eucA 311 1.60e+01 2scuA c.2.1.8,c.23.4.1 30311,31139 1kq3A 376 1.61e+01 e.22.1.2 68790 1om0A 274 1.63e+01 c.1.8.5 87058 1v0wA 506 1.64e+01 d.136.1.2,d.136.1.2 108220,108221 1ta3A 274 1.65e+01 c.1.8.5 106731 4pep 326 1.78e+01 1smrA b.50.1.2 26843 1f0iA 504 1.85e+01 1f0iA d.136.1.2,d.136.1.2 59566,59567 1ejbA 168 1.85e+01 1rvv1 c.16.1.1 59417 1yal 218 1.92e+01 1cs8A d.3.1.1 37025 1ctqA 166 1.98e+01 1ctqA c.37.1.8 31965 1hrhA 136 2.02e+01 1rthA c.55.3.1 33577 1zd9A 188 2.13e+01 1x1gA 129 2.13e+01 1agp 166 2.17e+01 1ctqA c.37.1.8 31985 1ukuA 102 2.26e+01 d.58.5.2 99533 1iqsA 88 2.26e+01 d.214.1.1 71278 1ha3A 405 2.28e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 60869,60870,60871 2c78A 405 2.44e+01 2bzlA 325 2.47e+01 1fxjA 331 2.51e+01 1fwyA b.81.1.4,c.68.1.5 28062,34520 1w78A 422 2.72e+01 1h7zA 194 2.76e+01 1qhvA b.21.1.1 60733 1rz1A 161 2.86e+01 b.45.1.2 98124 1hqkA 154 2.86e+01 c.16.1.1 65902 5p21 166 2.99e+01 1ctqA c.37.1.8 31966 1z47A 355 3.19e+01 1ux2A 212 3.19e+01 b.96.1.1 100132 1i9bA 217 3.30e+01 1i9bA b.96.1.1 62084 1przA 252 3.40e+01 d.265.1.3 95064 821p 166 3.40e+01 1ctqA c.37.1.8 31969 1xc3A 302 3.46e+01 1a48 306 3.55e+01 1a48 d.143.1.1 41590 1evxA 162 3.59e+01 1a73A d.4.1.3 37149 1eft 405 3.61e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25688,25728,32123 1exmA 405 3.61e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25696,25736,32131 1ptmA 329 3.63e+01 c.77.1.3 95104 1w7lA 422 3.74e+01 c.67.1.1 109226 1eyyA 510 3.75e+01 1eyyA c.82.1.1 35389 2cnqA 306 3.79e+01 1i0rA 169 3.85e+01 1i0rA b.45.1.2 61489 1i0sA 169 3.85e+01 1i0rA b.45.1.2 61491 2ag9A 164 3.91e+01 1obdA 306 3.98e+01 d.143.1.1 86767 1ez0A 510 4.06e+01 1eyyA c.82.1.1 35385 1u8zA 168 4.07e+01 1nvmB 312 4.11e+01 c.2.1.3,d.81.1.1 86251,86252 1zuxA 224 4.19e+01 1zesA 125 4.20e+01 1p57A 114 4.25e+01 d.170.1.2 94125 1uv6A 210 4.30e+01 b.96.1.1 100030 1uw6A 211 4.36e+01 b.96.1.1 100079 1kzhA 555 4.38e+01 c.89.1.1 73361 1xt5A 135 4.48e+01 1ujpA 271 4.52e+01 c.1.2.4 99462 3ullA 132 4.55e+01 3ullA b.40.4.3 25282 1mjfA 281 4.61e+01 c.66.1.17 79198 1vdwA 254 4.69e+01 e.7.1.1 100569 1tyyA 339 4.70e+01 1rybA 212 4.79e+01 c.56.3.1 98098 1ihjA 98 4.88e+01 1pdr b.36.1.1 62382 1nh1A 330 4.91e+01 e.45.1.1 91871 2cbf 234 4.94e+01 1cbf c.90.1.1 35588 2evwX 166 4.99e+01 1xvwA 160 5.01e+01 1bqnA 558 5.07e+01 1rthA c.55.3.1,e.8.1.2 33599,43064 1fjgP 88 5.08e+01 1emwA d.27.1.1 38444 1b73A 254 5.36e+01 1b74A c.78.2.1,c.78.2.1 35266,35267 1eetA 557 5.37e+01 1rthA c.55.3.1,e.8.1.2 33608,43078 1kgsA 225 5.51e+01 a.4.6.1,c.23.1.1 68596,68597 1vhoA 346 5.57e+01 b.49.3.1,c.56.5.4 100694,100695 1wcuA 153 5.58e+01 2asuB 234 5.69e+01 1xfsA 178 5.74e+01 d.129.3.5 109589 1p8xA 344 5.74e+01 d.109.1.1,d.109.1.1,d.109.1.1 94365,94366,94367 1a73A 163 5.77e+01 1a73A d.4.1.3 37145 2a9kA 187 5.79e+01 1rxyA 253 5.92e+01 c.56.2.1 98065 1hniA 558 5.94e+01 1rthA c.55.3.1,e.8.1.2 33586,43044 1pbtA 244 5.94e+01 c.124.1.1 94416 1ehkB 168 5.98e+01 2cuaA b.6.1.2,f.17.2.1 23041,43625 1bgvA 449 6.03e+01 1k89 c.2.1.7,c.58.1.1 30217,33865 1w85A 368 6.08e+01 1yreA 197 6.12e+01 1hrdA 449 6.17e+01 1k89 c.2.1.7,c.58.1.1 30219,33867 1p4oA 322 6.33e+01 d.144.1.7 87775 2h2tB 175 6.50e+01 1ve0A 134 6.53e+01 1qfxA 460 6.58e+01 1qfxA c.60.1.2 33994 1r88A 280 6.58e+01 c.69.1.3 97219 1t61A 229 6.62e+01 d.169.1.6,d.169.1.6 106529,106530 2ag4A 164 6.78e+01 1v3vA 333 6.83e+01 b.35.1.2,c.2.1.1 108345,108346 3psg 370 6.83e+01 1smrA b.50.1.2 26841 1vhvA 268 6.91e+01 c.90.1.1 100704 1vl1A 232 7.01e+01 c.124.1.1 108707 1mldA 314 7.02e+01 2cmd c.2.1.5,d.162.1.1 30122,42089 1oj7A 408 7.09e+01 e.22.1.2 103971 1lx7A 253 7.10e+01 c.56.2.1 74329 1uuyA 167 7.26e+01 c.57.1.1 108059 2g0cA 76 7.27e+01 1tc1A 220 7.46e+01 1tc1A c.61.1.1 34083 1jh3A 107 7.53e+01 d.66.1.4 71661 2a3nA 355 7.73e+01 1jmmA 377 7.80e+01 b.30.6.1 71749 1jqhA 308 7.84e+01 d.144.1.7 71793 1wkoA 180 7.86e+01 2hmiA 558 7.88e+01 1rthA c.55.3.1,e.8.1.2 33604,43106 1q0uA 219 7.88e+01 c.37.1.19 95512 1v5eA 590 8.09e+01 1k3fA 253 8.22e+01 c.56.2.1 68105 1sayA 361 8.28e+01 1sayA c.2.1.4,c.23.12.2 30102,31362 2fiqA 420 8.33e+01 1jeoA 180 8.37e+01 c.80.1.3 66611 1vf8A 377 8.38e+01 1oe4A 247 8.47e+01 c.18.1.3 86895 1nt4A 391 8.64e+01 c.60.1.2 92102 1xhkA 187 8.64e+01 1g2oA 268 8.67e+01 1b8oA c.56.2.1 60228 1uirA 314 8.67e+01 c.66.1.17 99429 2cuaA 135 8.74e+01 2cuaA b.6.1.2 23039