# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ejbA 168 4.03e-01 1rvv1 c.16.1.1 59417 1r88A 280 5.07e-01 c.69.1.3 97219 1lxjA 104 6.98e-01 d.58.48.1 84736 1pjcA 361 7.20e-01 1sayA c.2.1.4,c.23.12.2 30101,31361 1k4mA 213 1.26e+00 c.26.1.3 77258 1ez0A 510 2.09e+00 1eyyA c.82.1.1 35385 1fjgP 88 2.23e+00 1emwA d.27.1.1 38444 1qo7A 394 2.77e+00 1qo7A c.69.1.11 34697 1oi7A 288 3.04e+00 c.2.1.8,c.23.4.1 87049,87050 1klo 162 3.72e+00 1klo g.3.11.2,g.3.11.2,g.3.11.2 44326,44327,44328 1y9aA 360 4.26e+00 1xt5A 135 5.78e+00 1vj0A 380 6.38e+00 b.35.1.2,c.2.1.1 100786,100787 1o2dA 371 7.06e+00 e.22.1.2 86591 1wm1A 317 7.66e+00 c.69.1.7 109405 2cuaA 135 7.73e+00 2cuaA b.6.1.2 23039 1szoA 257 8.36e+00 c.14.1.3 106164 1v0wA 506 8.58e+00 d.136.1.2,d.136.1.2 108220,108221 1vb5A 276 8.88e+00 1vkmA 297 9.42e+00 c.138.1.1 108670 1nkgA 508 9.61e+00 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 2fclA 169 9.90e+00 1wohA 305 1.04e+01 c.42.1.1 109446 1lzjA 292 1.07e+01 c.68.1.9 74352 1ukcA 522 1.12e+01 c.69.1.17 107911 1i1qA 520 1.15e+01 1qdlA d.161.1.1 61543 2fgoA 82 1.22e+01 1oe4A 247 1.23e+01 c.18.1.3 86895 2an1A 292 1.28e+01 2a1fA 247 1.38e+01 1gteA 1025 1.53e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1ni9A 338 1.55e+01 e.7.1.2 85739 2g0cA 76 1.65e+01 2b99A 156 1.66e+01 1o7qA 289 1.72e+01 c.68.1.9 92626 1oyzA 280 1.72e+01 a.118.1.16 93775 1qkkA 155 1.81e+01 1dbwA c.23.1.1 31104 1y89A 238 1.88e+01 1vdc 333 1.90e+01 1trb c.3.1.5,c.3.1.5 30545,30546 2ch8A 201 1.92e+01 1tbd 134 1.98e+01 2tbd d.89.1.1 40240 1ig8A 486 2.03e+01 2yhx c.55.1.3,c.55.1.3 64746,64747 1vkyA 347 2.11e+01 e.53.1.1 108696 2d1sA 548 2.11e+01 1k66A 149 2.16e+01 c.23.1.1 90941 1u02A 239 2.18e+01 c.108.1.15 107538 1vpjA 192 2.22e+01 1upaA 573 2.25e+01 c.31.1.3,c.36.1.5,c.36.1.9 99714,99715,99716 1njrA 284 2.33e+01 c.50.1.2 103858 1zc6A 305 2.39e+01 1jnrA 643 2.55e+01 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 2g62A 325 2.66e+01 1ou0A 207 2.76e+01 c.23.17.1 93536 1wleA 501 2.78e+01 1f7uA 607 2.81e+01 1bs2A a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 2fjbA 643 2.86e+01 2bneA 241 2.92e+01 1gsa 316 2.95e+01 1gsa c.30.1.3,d.142.1.1 31718,41477 1y0eA 223 3.24e+01 2biiA 424 3.28e+01 1g2iA 166 3.34e+01 1g2iA c.23.16.2 31438 2apoA 357 3.35e+01 1o5zA 442 3.36e+01 c.59.1.2,c.72.2.2 92530,92531 1aisB 200 3.37e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 1ad2 228 3.41e+01 1ad2 e.24.1.1 43353 1ta3A 274 3.42e+01 c.1.8.5 106731 1efpB 252 3.42e+01 1efvB c.26.2.3 31636 1z41A 338 3.46e+01 1kfwA 435 3.61e+01 c.1.8.5,d.26.3.1 77376,77377 1kqfA 1015 3.79e+01 b.52.2.2,c.81.1.1 72871,72872 2es9A 115 3.80e+01 2b4lA 268 3.89e+01 1ewkA 490 3.97e+01 1ewkA c.93.1.1 35712 2fliA 220 4.09e+01 1g1xC 88 4.18e+01 1fjfR a.4.8.1 16249 2arhA 203 4.19e+01 1vljA 407 4.22e+01 e.22.1.2 108832 1kgsA 225 4.22e+01 a.4.6.1,c.23.1.1 68596,68597 1uk8A 282 4.22e+01 c.69.1.10 107907 1zl0A 311 4.30e+01 1gq6A 313 4.32e+01 c.42.1.1 70341 2ag4A 164 4.40e+01 1l8aA 886 4.46e+01 c.36.1.10,c.36.1.6,c.48.1.1 73677,73678,73679 1aquA 297 4.47e+01 1aquA c.37.1.5 31942 1cvrA 435 4.49e+01 1cvrA b.1.18.12,c.17.1.2 21949,31006 1ww9A 392 4.60e+01 1ykjA 394 4.61e+01 1k0iA 394 4.62e+01 c.3.1.2,d.16.1.2 67942,67943 1uhvA 500 4.63e+01 b.71.1.2,c.1.8.3 99402,99403 2gefA 217 4.76e+01 2akzA 439 4.82e+01 2fdsA 352 4.86e+01 1hqkA 154 5.04e+01 c.16.1.1 65902 1ufoA 238 5.05e+01 c.69.1.27 99344 1aqzA 149 5.14e+01 1aqzA d.1.1.3 36238 2ffcA 353 5.26e+01 1a9xA 1058 5.32e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 2as9A 210 5.52e+01 1ymqA 261 5.56e+01 1onrA 316 5.57e+01 1onrA c.1.10.1 29169 1vl1A 232 5.64e+01 c.124.1.1 108707 1zxxA 319 5.67e+01 1sheA 103 5.69e+01 d.274.1.1 105551 1viaA 175 5.76e+01 c.37.1.2 100754 1ns5A 155 5.87e+01 c.116.1.3 80705 1byi 224 5.95e+01 1byi c.37.1.10 32199 1cnv 299 5.96e+01 1cnv c.1.8.5 28989 1mv8A 436 6.01e+01 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1z9lA 128 6.03e+01 1ztuA 341 6.05e+01 1nhcA 336 6.07e+01 b.80.1.3 91879 1r5iD 216 6.11e+01 a.202.1.1 97091 1a53 247 6.22e+01 1a53 c.1.2.4 28564 1luaA 287 6.35e+01 c.2.1.7,c.58.1.4 78216,78217 1wdpA 495 6.41e+01 1czaN 917 6.78e+01 1qhaA c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 1i88A 389 6.89e+01 c.95.1.2,c.95.1.2 66070,66071 1pn0A 665 6.94e+01 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 2bwnA 401 6.99e+01 2bb3A 221 7.08e+01 1e5pA 151 7.11e+01 1bj7 b.60.1.1 59272 1fwxA 595 7.18e+01 b.6.1.4,b.69.3.1 60069,60070 2bjbA 462 7.18e+01 1lr5A 163 7.22e+01 b.82.1.2 74215 1nkqA 259 7.40e+01 d.177.1.1 103862 1nhs 447 7.46e+01 1nhp c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 2fsjA 346 7.54e+01 1yfqA 342 7.76e+01 1w85A 368 7.89e+01 1cs0A 1073 7.93e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1rlmA 271 7.99e+01 1pk6C 129 7.99e+01 b.22.1.1 94803 1x99A 145 8.27e+01 1x1tA 260 8.29e+01 1obbA 480 8.34e+01 c.2.1.5,d.162.1.2 86760,86761 1ugpA 203 8.39e+01 d.149.1.1 107831 2hvm 273 8.44e+01 1cnv c.1.8.5 28985 2fsqA 243 8.46e+01 1wcuA 153 8.60e+01 1b79A 119 8.64e+01 1b79A a.81.1.1 18451 1wpiA 133 8.65e+01 1bqcA 302 8.67e+01 1bqcA c.1.8.3 28831