# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1tbd 134 2.53e-01 2tbd d.89.1.1 40240 1szoA 257 3.98e-01 c.14.1.3 106164 1wleA 501 7.51e-01 1kq3A 376 1.13e+00 e.22.1.2 68790 1ejeA 192 1.20e+00 1ejeA b.45.1.2 25757 1k4mA 213 2.42e+00 c.26.1.3 77258 1rz1A 161 3.55e+00 b.45.1.2 98124 1w85A 368 4.18e+00 1a6q 382 4.19e+00 1a6q a.159.1.1,d.219.1.1 75801,75802 1mkyA 439 5.25e+00 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1fjgP 88 6.70e+00 1emwA d.27.1.1 38444 1jf8A 131 6.82e+00 c.44.1.1 66621 2c78A 405 8.69e+00 1v9fA 325 8.69e+00 d.265.1.3 108448 1o22A 170 8.70e+00 d.238.1.1 86557 1ptmA 329 9.12e+00 c.77.1.3 95104 1d1gA 168 9.12e+00 1d1gA c.71.1.1 34889 1ww9A 392 9.33e+00 1a73A 163 9.45e+00 1a73A d.4.1.3 37145 1ve0A 134 1.04e+01 1ejbA 168 1.09e+01 1rvv1 c.16.1.1 59417 1yal 218 1.10e+01 1cs8A d.3.1.1 37025 1ukuA 102 1.11e+01 d.58.5.2 99533 1ctqA 166 1.16e+01 1ctqA c.37.1.8 31965 1r88A 280 1.19e+01 c.69.1.3 97219 1g2iA 166 1.22e+01 1g2iA c.23.16.2 31438 1vdwA 254 1.40e+01 e.7.1.1 100569 1jh3A 107 1.45e+01 d.66.1.4 71661 1vhvA 268 1.66e+01 c.90.1.1 100704 1nhs 447 1.69e+01 1nhp c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 2ag4A 164 1.78e+01 2evwX 166 1.82e+01 3ullA 132 1.89e+01 3ullA b.40.4.3 25282 1ta3A 274 1.91e+01 c.1.8.5 106731 2fh1A 344 1.98e+01 1xvwA 160 2.05e+01 1rl6A 177 2.06e+01 1rl6A d.141.1.1,d.141.1.1 41473,41474 1xt5A 135 2.15e+01 1jl3A 139 2.25e+01 c.44.1.1 66826 1vhoA 346 2.31e+01 b.49.3.1,c.56.5.4 100694,100695 2cuaA 135 2.35e+01 2cuaA b.6.1.2 23039 1yreA 197 2.36e+01 1hqkA 154 2.39e+01 c.16.1.1 65902 1qsmA 152 2.41e+01 1qsmA d.108.1.1 40808 1tc1A 220 2.50e+01 1tc1A c.61.1.1 34083 1i24A 404 2.51e+01 c.2.1.2 83663 1p8xA 344 2.60e+01 d.109.1.1,d.109.1.1,d.109.1.1 94365,94366,94367 2b99A 156 2.67e+01 1qfxA 460 2.71e+01 1qfxA c.60.1.2 33994 1o2dA 371 2.92e+01 e.22.1.2 86591 2asuB 234 2.98e+01 1u8zA 168 3.00e+01 1vzyA 291 3.01e+01 1vl7A 157 3.01e+01 b.45.1.1 108732 2b49A 287 3.03e+01 2arhA 203 3.08e+01 1qo7A 394 3.09e+01 1qo7A c.69.1.11 34697 2a10A 125 3.15e+01 1m93B 245 3.22e+01 1gpiA 431 3.40e+01 b.29.1.10 65450 1qgvA 142 3.43e+01 1qgvA c.47.1.8 33056 1hrhA 136 3.45e+01 1rthA c.55.3.1 33577 2h2tB 175 3.48e+01 2fiqA 420 3.48e+01 1nhcA 336 3.52e+01 b.80.1.3 91879 1v3vA 333 3.57e+01 b.35.1.2,c.2.1.1 108345,108346 1w0mA 226 3.62e+01 c.1.1.1 109027 1tp9A 162 3.63e+01 1rj8A 164 3.64e+01 b.22.1.1 97547 1qkkA 155 3.67e+01 1dbwA c.23.1.1 31104 1ujpA 271 3.72e+01 c.1.2.4 99462 1yixA 265 3.75e+01 1ns5A 155 3.75e+01 c.116.1.3 80705 1vl1A 232 3.77e+01 c.124.1.1 108707 1i0rA 169 3.78e+01 1i0rA b.45.1.2 61489 1nr0A 611 3.81e+01 b.69.4.1,b.69.4.1 86078,86079 1q0uA 219 3.91e+01 c.37.1.19 95512 2pth 193 3.92e+01 2pth c.56.3.1 33793 2fytA 340 3.92e+01 1aisB 200 3.94e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 2gupA 292 3.96e+01 1mldA 314 4.07e+01 2cmd c.2.1.5,d.162.1.1 30122,42089 2cnqA 306 4.11e+01 2bzlA 325 4.12e+01 1h7zA 194 4.16e+01 1qhvA b.21.1.1 60733 1wcuA 153 4.18e+01 1zoiA 276 4.25e+01 1obdA 306 4.32e+01 d.143.1.1 86767 1f74A 293 4.55e+01 1nal3 c.1.10.1 29079 1l8aA 886 4.62e+01 c.36.1.10,c.36.1.6,c.48.1.1 73677,73678,73679 1e12A 253 4.62e+01 1c3wA f.13.1.1 43428 1ve2A 235 4.65e+01 1vjqA 79 4.71e+01 k.43.1.1 100830 1sfe 180 4.86e+01 1sfe a.4.2.1,c.55.7.1 16073,33748 1vljA 407 4.88e+01 e.22.1.2 108832 1dyr 206 4.88e+01 1aoeA c.71.1.1 34916 1vb5A 276 4.91e+01 2btzA 394 4.96e+01 1t61A 229 4.97e+01 d.169.1.6,d.169.1.6 106529,106530 1a8q 274 4.97e+01 1brt c.69.1.12 34702 2aeeA 211 5.01e+01 1vquA 374 5.02e+01 1ihjA 98 5.05e+01 1pdr b.36.1.1 62382 1m8jA 181 5.33e+01 c.26.1.3 84875 1ej2A 181 5.35e+01 1f9aA c.26.1.3 59414 1yifA 533 5.38e+01 2g8jA 339 5.45e+01 1nd4A 264 5.62e+01 d.144.1.6 91815 1luaA 287 5.68e+01 c.2.1.7,c.58.1.4 78216,78217 2cxcA 144 5.69e+01 1qb5D 99 5.70e+01 b.40.2.1 88357 1pkoA 139 5.71e+01 b.1.1.1 88147 2cu6A 103 5.82e+01 1nwwA 149 5.92e+01 d.17.4.8 86306 1tl9A 339 6.08e+01 1hkfA 122 6.11e+01 b.1.1.1 83553 1rybA 212 6.12e+01 c.56.3.1 98098 1o6dA 163 6.16e+01 c.116.1.3 92567 1z9lA 128 6.17e+01 1v60A 123 6.18e+01 2ew8A 249 6.21e+01 1kewA 361 6.22e+01 c.2.1.2 68544 1hruA 188 6.35e+01 1hruA d.115.1.1 40926 1m6sA 347 6.36e+01 c.67.1.1 78701 1kafA 108 6.52e+01 d.199.1.1 68372 1dciA 275 6.56e+01 1dciA c.14.1.3 30918 1v0wA 506 6.89e+01 d.136.1.2,d.136.1.2 108220,108221 1jf9A 408 6.94e+01 1c0nA c.67.1.3 62931 1kgsA 225 7.00e+01 a.4.6.1,c.23.1.1 68596,68597 1gdeA 389 7.05e+01 c.67.1.1 60456 1wd5A 208 7.06e+01 2ch8A 201 7.08e+01 1ysjA 404 7.24e+01 1kxqE 120 7.27e+01 b.1.1.1 73171 2fliA 220 7.34e+01 1wy2A 351 7.36e+01 2gk9A 426 7.60e+01 2et1A 201 7.67e+01 2fclA 169 7.84e+01 1h5qA 265 7.84e+01 1cydA c.2.1.2 60643 1t0iA 191 7.96e+01 c.23.5.4 106209 1y9aA 360 7.96e+01 1zd9A 188 8.07e+01 1vybA 238 8.26e+01 d.151.1.1 108897 1bj7 156 8.33e+01 1bj7 b.60.1.1 27113 1nu0A 138 8.36e+01 c.55.3.8 92165 1vjuA 309 8.37e+01 d.248.1.1 100835 1fi2A 201 8.46e+01 1fi2A b.82.1.2 59845 1xfsA 178 8.48e+01 d.129.3.5 109589 1zczA 464 8.54e+01 1xkiA 162 8.60e+01 1dv0A 47 8.65e+01 1dv0A a.5.2.1 16289 1ez0A 510 8.69e+01 1eyyA c.82.1.1 35385 1rxyA 253 8.71e+01 c.56.2.1 98065 1cuk 203 8.73e+01 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 1pjcA 361 8.77e+01 1sayA c.2.1.4,c.23.12.2 30101,31361 1vhqA 232 8.82e+01 c.23.16.2 100696 1tc5A 194 8.83e+01 c.110.1.1 106752 1o66A 275 8.84e+01 c.1.12.8 92547 1stzA 338 8.94e+01 a.4.5.51,d.110.2.3 106009,106010