# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ejeA 192 3.14e-02 1ejeA b.45.1.2 25757 1tbd 134 2.27e-01 2tbd d.89.1.1 40240 1kq3A 376 3.10e-01 e.22.1.2 68790 1fjgP 88 1.41e+00 1emwA d.27.1.1 38444 1ejbA 168 1.62e+00 1rvv1 c.16.1.1 59417 1vzyA 291 2.31e+00 2b99A 156 2.96e+00 1mkyA 439 3.33e+00 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1nhs 447 3.42e+00 1nhp c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1w85A 368 3.96e+00 2fliA 220 4.41e+00 1tp9A 162 4.60e+00 2ch8A 201 5.10e+00 1wleA 501 5.17e+00 1yal 218 5.98e+00 1cs8A d.3.1.1 37025 3ullA 132 6.03e+00 3ullA b.40.4.3 25282 1o2dA 371 6.17e+00 e.22.1.2 86591 1a6q 382 6.21e+00 1a6q a.159.1.1,d.219.1.1 75801,75802 1v9fA 325 6.74e+00 d.265.1.3 108448 1kgsA 225 6.82e+00 a.4.6.1,c.23.1.1 68596,68597 1rz1A 161 8.07e+00 b.45.1.2 98124 1aisB 200 8.31e+00 1aisB a.74.1.2,a.74.1.2 18384,18385 1vjqA 79 8.34e+00 k.43.1.1 100830 1ukuA 102 8.70e+00 d.58.5.2 99533 1ctqA 166 8.95e+00 1ctqA c.37.1.8 31965 1hkfA 122 9.03e+00 b.1.1.1 83553 2bzlA 325 9.29e+00 1ihjA 98 9.54e+00 1pdr b.36.1.1 62382 2a10A 125 9.73e+00 1o22A 170 9.79e+00 d.238.1.1 86557 1wxcA 281 9.83e+00 2fiqA 420 9.84e+00 1a73A 163 9.97e+00 1a73A d.4.1.3 37145 2ew8A 249 1.05e+01 1w0mA 226 1.07e+01 c.1.1.1 109027 2pth 193 1.07e+01 2pth c.56.3.1 33793 1vb5A 276 1.09e+01 2cuaA 135 1.13e+01 2cuaA b.6.1.2 23039 1ve0A 134 1.17e+01 1jf8A 131 1.18e+01 c.44.1.1 66621 2evwX 166 1.23e+01 1vhvA 268 1.24e+01 c.90.1.1 100704 1rl6A 177 1.25e+01 1rl6A d.141.1.1,d.141.1.1 41473,41474 1pk6C 129 1.26e+01 b.22.1.1 94803 1ve2A 235 1.31e+01 1iq6A 134 1.34e+01 d.38.1.4 76755 1pjcA 361 1.42e+01 1sayA c.2.1.4,c.23.12.2 30101,31361 1xfsA 178 1.46e+01 d.129.3.5 109589 1tc1A 220 1.46e+01 1tc1A c.61.1.1 34083 2f8lA 344 1.50e+01 1z47A 355 1.57e+01 1v60A 123 1.59e+01 1p8xA 344 1.70e+01 d.109.1.1,d.109.1.1,d.109.1.1 94365,94366,94367 1qsmA 152 1.74e+01 1qsmA d.108.1.1 40808 1td4A 115 1.76e+01 1hrhA 136 1.78e+01 1rthA c.55.3.1 33577 1eny 268 1.79e+01 1eny c.2.1.2 29910 1r88A 280 1.80e+01 c.69.1.3 97219 1v0wA 506 1.83e+01 d.136.1.2,d.136.1.2 108220,108221 1vl7A 157 1.84e+01 b.45.1.1 108732 2cnqA 306 1.85e+01 1xkiA 162 1.94e+01 2aeeA 211 1.95e+01 2glfA 450 2.01e+01 1obdA 306 2.01e+01 d.143.1.1 86767 1ptmA 329 2.02e+01 c.77.1.3 95104 1gpiA 431 2.03e+01 b.29.1.10 65450 1yreA 197 2.10e+01 2c07A 285 2.24e+01 1m93B 245 2.26e+01 1sznA 417 2.26e+01 b.71.1.1,c.1.8.1 106162,106163 1d1gA 168 2.27e+01 1d1gA c.71.1.1 34889 1u8zA 168 2.27e+01 1ujpA 271 2.29e+01 c.1.2.4 99462 1s62A 106 2.29e+01 1xzoA 174 2.31e+01 1qe5A 266 2.34e+01 1b8oA c.56.2.1 33784 1x0vA 354 2.38e+01 1oi7A 288 2.39e+01 c.2.1.8,c.23.4.1 87049,87050 1euvB 86 2.52e+01 1a5r d.15.1.1 37598 1xt5A 135 2.63e+01 1i0lA 221 2.67e+01 c.61.1.1 71096 1a8s 273 2.70e+01 1brt c.69.1.12 34710 1y9aA 360 2.78e+01 1q0uA 219 2.78e+01 c.37.1.19 95512 1xvwA 160 2.89e+01 1woyA 500 2.89e+01 1ej2A 181 2.89e+01 1f9aA c.26.1.3 59414 1nh1A 330 2.92e+01 e.45.1.1 91871 1v3vA 333 3.00e+01 b.35.1.2,c.2.1.1 108345,108346 1wcuA 153 3.02e+01 1jl3A 139 3.05e+01 c.44.1.1 66826 1pfvA 551 3.09e+01 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 1kafA 108 3.13e+01 d.199.1.1 68372 1m8jA 181 3.18e+01 c.26.1.3 84875 1t95A 240 3.21e+01 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 1fp3A 402 3.22e+01 1fp3A a.102.1.3 18842 1bgvA 449 3.33e+01 1k89 c.2.1.7,c.58.1.1 30217,33865 1vhoA 346 3.35e+01 b.49.3.1,c.56.5.4 100694,100695 1f74A 293 3.35e+01 1nal3 c.1.10.1 29079 1k4mA 213 3.45e+01 c.26.1.3 77258 1zgzA 122 3.48e+01 1odfA 290 3.51e+01 c.37.1.6 92782 1o4vA 183 3.53e+01 c.23.8.1 86628 1l7mA 211 3.57e+01 c.108.1.4 73664 2fsjA 346 3.59e+01 1byi 224 3.59e+01 1byi c.37.1.10 32199 2aq8A 269 3.60e+01 1kfwA 435 3.60e+01 c.1.8.5,d.26.3.1 77376,77377 1i0rA 169 3.65e+01 1i0rA b.45.1.2 61489 1t0bA 252 3.66e+01 c.23.16.6 106199 1vybA 238 3.69e+01 d.151.1.1 108897 1ns5A 155 3.70e+01 c.116.1.3 80705 1ko3A 230 3.77e+01 d.157.1.1 90974 1rj8A 164 3.77e+01 b.22.1.1 97547 1h5qA 265 3.81e+01 1cydA c.2.1.2 60643 1b00A 127 3.83e+01 3chy c.23.1.1 31122 1wy2A 351 3.86e+01 1k1eA 180 3.93e+01 c.108.1.5 67995 1t61A 229 4.02e+01 d.169.1.6,d.169.1.6 106529,106530 1oxxK 353 4.03e+01 b.40.6.3,c.37.1.12 93715,93716 1pa1A 310 4.07e+01 c.45.1.2 94404 1nwwA 149 4.09e+01 d.17.4.8 86306 1hgxA 183 4.16e+01 1tc1A c.61.1.1 34027 1aky 221 4.17e+01 1zin c.37.1.1,g.41.2.1 31896,45197 1xmpA 170 4.28e+01 2agkA 260 4.29e+01 1rp0A 284 4.35e+01 2arhA 203 4.38e+01 2bkaA 242 4.39e+01 1ta9A 450 4.44e+01 1luaA 287 4.46e+01 c.2.1.7,c.58.1.4 78216,78217 1uuyA 167 4.46e+01 c.57.1.1 108059 2f71A 298 4.46e+01 1e9rA 437 4.47e+01 c.37.1.11 64827 2et1A 201 4.49e+01 1qlpA 394 4.51e+01 1ovaA e.1.1.1 42628 1v4pA 157 4.51e+01 1vl1A 232 4.53e+01 c.124.1.1 108707 1x82A 190 4.55e+01 2cxxA 190 4.57e+01 1cuk 203 4.59e+01 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 2fh1A 344 4.66e+01 2asuB 234 4.71e+01 1m3uA 264 4.71e+01 c.1.12.8 84784 1kxqE 120 4.72e+01 b.1.1.1 73171 1onrA 316 4.74e+01 1onrA c.1.10.1 29169 2bgcA 238 4.76e+01 2b3yA 888 4.79e+01 1mldA 314 4.80e+01 2cmd c.2.1.5,d.162.1.1 30122,42089 1hqkA 154 4.88e+01 c.16.1.1 65902 1gtkA 313 4.96e+01 c.94.1.1,d.50.2.1 76346,76347 1fi2A 201 4.99e+01 1fi2A b.82.1.2 59845 1w8sA 263 5.02e+01 1krhA 338 5.02e+01 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 2g8jA 339 5.03e+01 1zh2A 121 5.19e+01 1zkeA 83 5.19e+01 1q7sA 117 5.20e+01 c.131.1.1 96055 1zd9A 188 5.25e+01 2cxcA 144 5.26e+01 1o66A 275 5.32e+01 c.1.12.8 92547 1y89A 238 5.36e+01 1rybA 212 5.39e+01 c.56.3.1 98098 1n2zA 245 5.41e+01 c.92.2.2 79865 1ei9A 279 5.43e+01 1ei9A c.69.1.13 34713 1wb9A 800 5.45e+01 2g7zA 282 5.48e+01 1nm2A 317 5.52e+01 c.19.1.1,d.58.23.1 80654,80655 1x54A 434 5.56e+01 2ag4A 164 5.56e+01 1jtvA 327 5.62e+01 c.2.1.2 84230 1jkmB 361 5.70e+01 1jkmA c.69.1.2 34634 1oywA 523 5.70e+01 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2cu6A 103 5.75e+01 1em2A 229 5.78e+01 1em2A d.129.3.2 41321 1pkoA 139 5.82e+01 b.1.1.1 88147 1qfxA 460 5.86e+01 1qfxA c.60.1.2 33994 2cu5A 129 5.89e+01 1fnnA 389 5.91e+01 1fnnA a.4.5.11,c.37.1.20 16129,32426 2cwyA 94 5.92e+01 1k66A 149 5.92e+01 c.23.1.1 90941 1omzA 293 6.14e+01 c.68.1.15 87093 3pviA 157 6.15e+01 3pviA c.52.1.6 33300 1zl0A 311 6.16e+01 1fjgK 129 6.17e+01 1fjfK c.55.4.1 33733 1oaoA 674 6.17e+01 e.26.1.2 86744 1cjcA 460 6.19e+01 1cjcA c.3.1.1,c.4.1.1 30319,30604 1w78A 422 6.21e+01 1tl9A 339 6.37e+01 1l8aA 886 6.39e+01 c.36.1.10,c.36.1.6,c.48.1.1 73677,73678,73679 1h72C 296 6.50e+01 d.14.1.5,d.58.26.1 60712,60713 1h7zA 194 6.54e+01 1qhvA b.21.1.1 60733 1zoiA 276 6.54e+01 1o7jA 327 6.57e+01 c.88.1.1 81140 1kgcE 242 6.68e+01 b.1.1.1,b.1.1.2 77386,77387 1vpjA 192 6.69e+01 2bwfA 77 6.70e+01 1ww9A 392 6.71e+01 1dv0A 47 6.73e+01 1dv0A a.5.2.1 16289 1zboA 210 6.78e+01 1kxlA 199 6.82e+01 b.40.4.3 73155 1jeoA 180 6.89e+01 c.80.1.3 66611 2h2tB 175 7.05e+01 1zrn 232 7.07e+01 1qq5A c.108.1.1 43323 1llfA 534 7.22e+01 c.69.1.17 78094 1kid 203 7.24e+01 1derA c.8.5.1 30771 1thqA 170 7.33e+01 f.4.1.2 106920 1z8sA 146 7.38e+01 1k2xB 143 7.39e+01 2aqjA 538 7.47e+01 1o5zA 442 7.50e+01 c.59.1.2,c.72.2.2 92530,92531 2bv5A 282 7.51e+01 1qkkA 155 7.51e+01 1dbwA c.23.1.1 31104 1uh5A 329 7.51e+01 c.2.1.2 107840 1ou0A 207 7.55e+01 c.23.17.1 93536 2fclA 169 7.57e+01 1d3vA 323 7.64e+01 1d3vA c.42.1.1 32559 1kewA 361 7.66e+01 c.2.1.2 68544 1bjt 793 7.73e+01 1bjt e.11.1.1 43249 1o97C 264 7.76e+01 c.26.2.3 81232 1yifA 533 7.79e+01 1wgsA 133 7.81e+01 1o0yA 260 7.82e+01 c.1.10.1 80756 1nd4A 264 8.01e+01 d.144.1.6 91815 1wtjA 343 8.04e+01 1kk1A 410 8.05e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1nhcA 336 8.07e+01 b.80.1.3 91879 2btzA 394 8.16e+01 1t06A 235 8.18e+01 a.118.1.17 106194 1izcA 339 8.22e+01 c.1.12.5 83838 1s9rA 410 8.29e+01 d.126.1.4 98758 2gm3A 175 8.29e+01 1quqA 129 8.29e+01 1quqA b.40.4.3 25303 1qwlA 505 8.29e+01 e.5.1.1 96483 1thfD 253 8.43e+01 1thfD c.1.2.1 28535 1jqlB 140 8.45e+01 c.37.1.20 63234 2cvjA 180 8.46e+01 2ajrA 331 8.50e+01 1mjfA 281 8.50e+01 c.66.1.17 79198 1q2yA 140 8.51e+01 d.108.1.1 95655 1o6dA 163 8.52e+01 c.116.1.3 92567 1z7gA 217 8.60e+01 1p4oA 322 8.63e+01 d.144.1.7 87775 1v9sA 208 8.65e+01 1x99A 145 8.69e+01 2ge7A 108 8.78e+01 1o8xA 146 8.88e+01 c.47.1.10 86681 1gweA 503 8.92e+01 e.5.1.1 70667 2c78A 405 8.93e+01 1yixA 265 8.95e+01