# List of top-scoring protein chains for T0356.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1lxjA 104 2.02e+00 d.58.48.1 84736 1nz9A 58 2.30e+00 b.34.5.4 92364 1m1hA 248 3.29e+00 b.114.1.1,d.58.42.1 78415,78416 1lwjA 441 6.75e+00 b.71.1.1,c.1.8.1 74303,74304 1go3F 107 7.13e+00 a.60.8.2 65407 2es9A 115 9.18e+00 1mv8A 436 9.38e+00 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 2bi7A 384 9.67e+00 1o8uA 257 1.01e+01 c.14.1.3 81194 1k1gA 131 1.01e+01 d.51.1.1 68015 1wblA 241 1.15e+01 1led b.29.1.1 24052 1wbfA 242 1.15e+01 1led b.29.1.1 24050 1z05A 429 1.21e+01 1nwyT 237 1.38e+01 i.1.1.2 86364 1zorA 399 1.39e+01 1yl3V 253 1.40e+01 2ag9A 164 1.43e+01 1szoA 257 1.51e+01 c.14.1.3 106164 2ag4A 164 1.60e+01 1ogyB 130 1.68e+01 a.138.1.3 92954 1pnsP 83 1.77e+01 i.1.1.1 88183 1fjgP 88 1.83e+01 1emwA d.27.1.1 38444 2apoA 357 1.86e+01 1ww9A 392 1.96e+01 1wamA 384 2.13e+01 1cc1L 498 2.20e+01 1h2rL e.18.1.1 43301 1ml5S 91 2.48e+01 i.1.1.1 79274 1k4mA 213 2.84e+01 c.26.1.3 77258 1xc3A 302 3.33e+01 1oe4A 247 3.35e+01 c.18.1.3 86895 1g13A 162 3.48e+01 1g13A b.95.1.1 60194 1tvmA 113 3.85e+01 2an1A 292 3.87e+01 1kamA 194 3.87e+01 c.26.1.3 72254 2ch8A 201 4.13e+01 1eg0N 229 4.15e+01 1ad2 i.1.1.1 45820 1zhoA 228 4.18e+01 1ad2 228 4.23e+01 1ad2 e.24.1.1 43353 1g38A 393 4.38e+01 2admA c.66.1.27 60235 487dH 224 4.45e+01 1ad2 i.1.1.2 45835 2admA 421 4.53e+01 2admA c.66.1.27 34238 1aqjA 421 4.53e+01 2admA c.66.1.27 34242 1fxjA 331 4.65e+01 1fwyA b.81.1.4,c.68.1.5 28062,34520 1j88A 172 4.74e+01 2fcbA b.1.1.4,b.1.1.4 62717,62718 1j87A 172 4.77e+01 2fcbA b.1.1.4,b.1.1.4 62715,62716 1tbd 134 4.80e+01 2tbd d.89.1.1 40240 1f2qA 176 4.80e+01 2fcbA b.1.1.4,b.1.1.4 21789,21790 1vj0A 380 4.95e+01 b.35.1.2,c.2.1.1 100786,100787 1yz6A 274 4.96e+01 1z1dB 131 5.19e+01 1azwA 313 5.25e+01 1qtrA c.69.1.7 34658 1aim 215 5.37e+01 1cs8A d.3.1.1 37044 1klo 162 5.42e+01 1klo g.3.11.2,g.3.11.2,g.3.11.2 44326,44327,44328 2fbjH 220 5.56e+01 1igtB b.1.1.1,b.1.1.2 19851,20955 1r88A 280 5.67e+01 c.69.1.3 97219 1me4A 215 5.69e+01 d.3.1.1 79023 1pmr 80 5.72e+01 1ghj b.84.1.1 28233 1vzuA 289 5.91e+01 c.68.1.9 108973 1f6aA 176 5.93e+01 2fcbA b.1.1.4,b.1.1.4 21791,21792 1n2mA 165 5.95e+01 d.155.1.2 85278 1vztA 289 6.03e+01 1o7qA 289 6.12e+01 c.68.1.9 92626 1o7oA 289 6.20e+01 c.68.1.9 92624 1npeB 164 6.21e+01 g.3.11.2,g.3.11.2,g.3.11.2 92033,92034,92035 1g8oA 310 6.24e+01 1g8oA c.68.1.9 60375 1efpB 252 6.38e+01 1efvB c.26.2.3 31636 1hqkA 154 6.71e+01 c.16.1.1 65902 1p6qA 129 6.98e+01 c.23.1.1 104074 1r82A 283 7.33e+01 c.68.1.9 97217 1vdwA 254 7.37e+01 e.7.1.1 100569 1yal 218 7.42e+01 1cs8A d.3.1.1 37025 1lzjA 292 7.46e+01 c.68.1.9 74352 1zizA 293 7.47e+01 1n1qA 149 7.50e+01 a.25.1.1 85260 1mh6A 125 7.52e+01 d.32.1.2 79116 1ewjA 126 7.55e+01 1ecsA d.32.1.2 59526 1upaA 573 7.63e+01 c.31.1.3,c.36.1.5,c.36.1.9 99714,99715,99716 1jlyA 304 7.66e+01 1jlyA b.42.3.1,b.42.3.1 25587,25588 1gsa 316 7.74e+01 1gsa c.30.1.3,d.142.1.1 31718,41477 1ecsA 126 7.81e+01 1ecsA d.32.1.2 59407 1z5nA 242 7.89e+01 1ejbA 168 7.99e+01 1rvv1 c.16.1.1 59417 1jysA 242 8.00e+01 c.56.2.1 77216 1z5oA 242 8.01e+01 1mrzA 293 8.06e+01 b.43.5.1,c.26.1.3 91452,91453 1g66A 207 8.28e+01 1bs9 c.69.1.30 31329 1hv9A 456 8.54e+01 1fwyA b.81.1.4,c.68.1.5 28060,34518 1wohA 305 8.83e+01 c.42.1.1 109446 1m54A 363 8.83e+01 c.79.1.1 74463