# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1u0tA 307 9.39e-01 e.52.1.1 107567 1fxjA 331 2.43e+00 1fwyA b.81.1.4,c.68.1.5 28062,34520 2cuaA 135 2.52e+00 2cuaA b.6.1.2 23039 1hv9A 456 2.86e+00 1fwyA b.81.1.4,c.68.1.5 28060,34518 1tbd 134 3.60e+00 2tbd d.89.1.1 40240 1ww9A 392 5.67e+00 2arhA 203 6.03e+00 1evxA 162 6.27e+00 1a73A d.4.1.3 37149 1a73A 163 8.66e+00 1a73A d.4.1.3 37145 1ejeA 192 9.24e+00 1ejeA b.45.1.2 25757 1x6oA 174 9.30e+00 b.34.5.2,b.40.4.5 109493,109494 1wleA 501 9.85e+00 1kq3A 376 1.04e+01 e.22.1.2 68790 1mkyA 439 1.13e+01 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1przA 252 1.14e+01 d.265.1.3 95064 2ch8A 201 1.17e+01 1r88A 280 1.18e+01 c.69.1.3 97219 3ullA 132 1.23e+01 3ullA b.40.4.3 25282 1k4mA 213 1.54e+01 c.26.1.3 77258 1b00A 127 1.55e+01 3chy c.23.1.1 31122 1xt5A 135 1.68e+01 1xc3A 302 1.74e+01 1a48 306 1.78e+01 1a48 d.143.1.1 41590 1zesA 125 1.83e+01 1xfsA 178 2.02e+01 d.129.3.5 109589 1rz1A 161 2.11e+01 b.45.1.2 98124 1wxcA 281 2.25e+01 1fjgP 88 2.28e+01 1emwA d.27.1.1 38444 2h2tB 175 2.41e+01 1rl6A 177 2.61e+01 1rl6A d.141.1.1,d.141.1.1 41473,41474 1szoA 257 2.62e+01 c.14.1.3 106164 1o8uA 257 2.64e+01 c.14.1.3 81194 1oaoA 674 2.92e+01 e.26.1.2 86744 1a6q 382 3.05e+01 1a6q a.159.1.1,d.219.1.1 75801,75802 2madH 373 3.29e+01 2bbkH b.69.2.1 27639 1qsoA 149 3.56e+01 1qsmA d.108.1.1 40812 1o22A 170 3.64e+01 d.238.1.1 86557 1s2kA 206 3.70e+01 b.29.1.20 98389 1jzuA 157 3.75e+01 b.60.1.1 84271 1tc1A 220 3.83e+01 1tc1A c.61.1.1 34083 1kafA 108 3.85e+01 d.199.1.1 68372 1v3vA 333 4.36e+01 b.35.1.2,c.2.1.1 108345,108346 2cnqA 306 4.39e+01 1pjcA 361 4.50e+01 1sayA c.2.1.4,c.23.12.2 30101,31361 1w85A 368 4.68e+01 2d37A 176 4.69e+01 1t61A 229 4.94e+01 d.169.1.6,d.169.1.6 106529,106530 2fwkA 121 5.00e+01 2asuB 234 5.01e+01 1xvwA 160 5.08e+01 1jmmA 377 5.11e+01 b.30.6.1 71749 1ve2A 235 5.19e+01 2f8lA 344 5.30e+01 1omiA 248 5.36e+01 b.82.3.3,a.4.5.4 87079,87080 1gpiA 431 5.52e+01 b.29.1.10 65450 1nhs 447 5.57e+01 1nhp c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1wd5A 208 5.57e+01 1y9aA 360 5.61e+01 1xcbA 211 5.69e+01 a.4.5.38,c.2.1.12 109552,109553 1oywA 523 5.71e+01 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1td4A 115 5.73e+01 1wcuA 153 5.74e+01 1obdA 306 5.76e+01 d.143.1.1 86767 1nt0A 286 5.77e+01 b.23.1.1,b.23.1.1,g.3.11.1 86143,86144,86145 1pk6C 129 5.81e+01 b.22.1.1 94803 1veaA 148 5.88e+01 d.275.1.1 108529 1x1gA 129 5.97e+01 1db3A 372 6.00e+01 1db3A c.2.1.2 29813 1v9fA 325 6.02e+01 d.265.1.3 108448 1r64A 481 6.07e+01 b.18.1.20,c.41.1.1 97140,97141 1kevA 351 6.12e+01 1pedA b.35.1.2,c.2.1.1 24749,29765 1dyr 206 6.41e+01 1aoeA c.71.1.1 34916 1pkoA 139 6.42e+01 b.1.1.1 88147 1yifA 533 6.58e+01 2as9A 210 6.60e+01 1ukuA 102 6.63e+01 d.58.5.2 99533 1nhp 447 6.65e+01 1nhp c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1t95A 240 6.78e+01 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 1h7zA 194 6.84e+01 1qhvA b.21.1.1 60733 1p5vA 235 7.02e+01 b.1.11.1,b.7.2.1 87812,87813 1y89A 238 7.50e+01 1p9qC 256 7.50e+01 a.5.8.1,d.235.1.2,d.58.11.3 104093,104094,104095 1f74A 293 7.59e+01 1nal3 c.1.10.1 29079 1exmA 405 7.64e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25696,25736,32131 1oj7A 408 7.83e+01 e.22.1.2 103971 1li1A 229 7.84e+01 d.169.1.6,d.169.1.6 73898,73899 1ukgA 252 7.97e+01 b.29.1.1 99489 1nt4A 391 8.01e+01 c.60.1.2 92102 2gupA 292 8.08e+01 1zpsA 138 8.25e+01 1k2xB 143 8.32e+01 1vzyA 291 8.36e+01 2b99A 156 8.37e+01 1m2eA 135 8.44e+01 c.23.1.5 78478 1wgsA 133 8.71e+01 1luaA 287 8.74e+01 c.2.1.7,c.58.1.4 78216,78217 1ha3A 405 8.78e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 60869,60870,60871 1hqkA 154 8.85e+01 c.16.1.1 65902 2aeeA 211 8.90e+01 2agkA 260 8.90e+01