# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1u0tA 307 8.63e-01 e.52.1.1 107567 1o8uA 257 8.83e-01 c.14.1.3 81194 1szoA 257 1.26e+00 c.14.1.3 106164 1tbd 134 2.10e+00 2tbd d.89.1.1 40240 1kq3A 376 2.45e+00 e.22.1.2 68790 1ejeA 192 2.53e+00 1ejeA b.45.1.2 25757 1wleA 501 4.46e+00 1przA 252 4.51e+00 d.265.1.3 95064 1k4mA 213 4.59e+00 c.26.1.3 77258 1mkyA 439 4.79e+00 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1hv9A 456 5.29e+00 1fwyA b.81.1.4,c.68.1.5 28060,34518 1r88A 280 7.32e+00 c.69.1.3 97219 1fxjA 331 8.41e+00 1fwyA b.81.1.4,c.68.1.5 28062,34520 1ha3A 405 8.93e+00 1efcA b.43.3.1,b.44.1.1,c.37.1.8 60869,60870,60871 2c78A 405 9.86e+00 1exmA 405 1.13e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25696,25736,32131 1evxA 162 1.38e+01 1a73A d.4.1.3 37149 1fjgP 88 1.40e+01 1emwA d.27.1.1 38444 1a73A 163 1.43e+01 1a73A d.4.1.3 37145 1ww9A 392 1.48e+01 1w85A 368 1.51e+01 1rz1A 161 1.64e+01 b.45.1.2 98124 1v9fA 325 1.72e+01 d.265.1.3 108448 1yal 218 1.81e+01 1cs8A d.3.1.1 37025 1a6q 382 1.82e+01 1a6q a.159.1.1,d.219.1.1 75801,75802 1vdwA 254 1.99e+01 e.7.1.1 100569 1qsoA 149 1.99e+01 1qsmA d.108.1.1 40812 1xc3A 302 2.14e+01 2cuaA 135 2.17e+01 2cuaA b.6.1.2 23039 1g2iA 166 2.19e+01 1g2iA c.23.16.2 31438 2arhA 203 2.28e+01 1d1gA 168 2.31e+01 1d1gA c.71.1.1 34889 1xt5A 135 2.36e+01 1iqoA 88 2.45e+01 d.214.1.1 71277 1ptmA 329 2.56e+01 c.77.1.3 95104 1ejbA 168 2.66e+01 1rvv1 c.16.1.1 59417 1o22A 170 2.66e+01 d.238.1.1 86557 1eudA 311 2.85e+01 2scuA c.2.1.8,c.23.4.1 30312,31140 1nhp 447 2.86e+01 1nhp c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1xvwA 160 2.98e+01 1nt4A 391 3.03e+01 c.60.1.2 92102 1dyr 206 3.17e+01 1aoeA c.71.1.1 34916 1h7zA 194 3.17e+01 1qhvA b.21.1.1 60733 2ag4A 164 3.22e+01 1jmmA 377 3.36e+01 b.30.6.1 71749 1jf8A 131 3.43e+01 c.44.1.1 66621 2asuB 234 3.47e+01 1gpiA 431 3.47e+01 b.29.1.10 65450 1nhs 447 3.68e+01 1nhp c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 3ullA 132 3.79e+01 3ullA b.40.4.3 25282 1v3vA 333 3.82e+01 b.35.1.2,c.2.1.1 108345,108346 1nhcA 336 3.83e+01 b.80.1.3 91879 2ag9A 164 3.85e+01 1rl6A 177 3.86e+01 1rl6A d.141.1.1,d.141.1.1 41473,41474 1tc1A 220 4.17e+01 1tc1A c.61.1.1 34083 1x1gA 129 4.27e+01 2gupA 292 4.31e+01 2cu1A 103 4.32e+01 1ve0A 134 4.56e+01 2h2tB 175 4.93e+01 1gdeA 389 5.09e+01 c.67.1.1 60456 1hqkA 154 5.16e+01 c.16.1.1 65902 1pjqA 457 5.30e+01 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1ukuA 102 5.38e+01 d.58.5.2 99533 1x6oA 174 5.60e+01 b.34.5.2,b.40.4.5 109493,109494 2ew8A 249 5.67e+01 1nr0A 611 5.76e+01 b.69.4.1,b.69.4.1 86078,86079 1ns5A 155 5.80e+01 c.116.1.3 80705 1w7lA 422 5.82e+01 c.67.1.1 109226 1hrhA 136 5.86e+01 1rthA c.55.3.1 33577 1om0A 274 5.90e+01 c.1.8.5 87058 2b99A 156 5.94e+01 2fytA 340 5.95e+01 1t61A 229 5.96e+01 d.169.1.6,d.169.1.6 106529,106530 1ihjA 98 5.99e+01 1pdr b.36.1.1 62382 1g13A 162 6.00e+01 1g13A b.95.1.1 60194 1kafA 108 6.21e+01 d.199.1.1 68372 1li1A 229 6.23e+01 d.169.1.6,d.169.1.6 73898,73899 1pu5A 164 6.26e+01 b.95.1.1 104310 1qfxA 460 6.27e+01 1qfxA c.60.1.2 33994 1xkiA 162 6.30e+01 1ta3A 274 6.61e+01 c.1.8.5 106731 1q0uA 219 6.91e+01 c.37.1.19 95512 1wcuA 153 6.91e+01 1qsmA 152 6.95e+01 1qsmA d.108.1.1 40808 2evwX 166 6.98e+01 1a48 306 7.07e+01 1a48 d.143.1.1 41590 1luaA 287 7.10e+01 c.2.1.7,c.58.1.4 78216,78217 1qo7A 394 7.15e+01 1qo7A c.69.1.11 34697 1hruA 188 7.21e+01 1hruA d.115.1.1 40926 1zuxA 224 7.24e+01 1yixA 265 7.25e+01 1oj7A 408 7.28e+01 e.22.1.2 103971 1xfsA 178 7.52e+01 d.129.3.5 109589 2cnqA 306 7.57e+01 1obdA 306 7.88e+01 d.143.1.1 86767 1tiiD 99 7.94e+01 1tiiD b.40.2.1 24965 1ctqA 166 8.01e+01 1ctqA c.37.1.8 31965 1o4vA 183 8.13e+01 c.23.8.1 86628 1dciA 275 8.17e+01 1dciA c.14.1.3 30918 1qb5D 99 8.35e+01 b.40.2.1 88357 1vhoA 346 8.36e+01 b.49.3.1,c.56.5.4 100694,100695 1vhvA 268 8.61e+01 c.90.1.1 100704 1z9lA 128 8.63e+01 1jh3A 107 8.75e+01 d.66.1.4 71661 1xmpA 170 8.98e+01 1ujpA 271 8.99e+01 c.1.2.4 99462