# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vdc 333 1.99e+00 1trb c.3.1.5,c.3.1.5 30545,30546 1pjcA 361 2.18e+00 1sayA c.2.1.4,c.23.12.2 30101,31361 1vj0A 380 2.96e+00 b.35.1.2,c.2.1.1 100786,100787 1oe4A 247 3.01e+00 c.18.1.3 86895 1ejbA 168 3.18e+00 1rvv1 c.16.1.1 59417 1hyuA 521 3.40e+00 1hyuA c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1ni9A 338 5.58e+00 e.7.1.2 85739 1fjgP 88 7.06e+00 1emwA d.27.1.1 38444 1k4mA 213 7.35e+00 c.26.1.3 77258 2ez3A 302 7.81e+00 1qtrA 317 8.03e+00 1qtrA c.69.1.7 34660 1lxjA 104 8.12e+00 d.58.48.1 84736 1h7wA 1025 8.33e+00 1h7wA a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 2an1A 292 8.40e+00 1gteA 1025 8.76e+00 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1r88A 280 8.78e+00 c.69.1.3 97219 1upaA 573 9.11e+00 c.31.1.3,c.36.1.5,c.36.1.9 99714,99715,99716 1wm1A 317 9.31e+00 c.69.1.7 109405 1pea 385 1.01e+01 1pea c.93.1.1 35662 1mo9A 523 1.06e+01 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1fl2A 310 1.15e+01 1hyuA c.3.1.5,c.3.1.5 59869,59870 1ou0A 207 1.26e+01 c.23.17.1 93536 4enl 436 1.29e+01 4enl c.1.11.1,d.54.1.1 29202,38846 1te6A 439 1.31e+01 c.1.11.1,d.54.1.1 106797,106798 1pv1A 299 1.39e+01 1trb 320 1.49e+01 1trb c.3.1.5,c.3.1.5 30529,30530 1luaA 287 1.53e+01 c.2.1.7,c.58.1.4 78216,78217 2cdcA 366 1.65e+01 1iupA 282 1.65e+01 c.69.1.10 76815 1uk8A 282 1.67e+01 c.69.1.10 107907 1vi2A 300 1.73e+01 c.2.1.7,c.58.1.5 100726,100727 1pdz 434 1.73e+01 4enl c.1.11.1,d.54.1.1 29215,38859 2al1A 436 1.74e+01 1ig8A 486 1.79e+01 2yhx c.55.1.3,c.55.1.3 64746,64747 2akzA 439 1.87e+01 1e3jA 352 1.88e+01 1e3jA b.35.1.2,c.2.1.1 24765,29781 1zc6A 305 1.89e+01 1azwA 313 2.01e+01 1qtrA c.69.1.7 34658 2gv8A 447 2.05e+01 1l1eA 287 2.11e+01 c.66.1.18 73454 1lwjA 441 2.12e+01 b.71.1.1,c.1.8.1 74303,74304 1a9xA 1058 2.12e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 1qrrA 394 2.13e+01 1qrrA c.2.1.2 29824 1nt4A 391 2.15e+01 c.60.1.2 92102 1ez0A 510 2.17e+01 1eyyA c.82.1.1 35385 1o2dA 371 2.18e+01 e.22.1.2 86591 1l2lA 457 2.22e+01 c.72.1.3 77656 1a88A 275 2.36e+01 1brt c.69.1.12 34707 1rsgA 516 2.38e+01 2cvjA 180 2.39e+01 1vqwA 457 2.43e+01 2al2A 436 2.52e+01 1ju2A 536 2.54e+01 c.3.1.2,d.16.1.1 77169,77170 12asA 330 2.59e+01 12asA d.104.1.1 40783 1ufoA 238 2.65e+01 c.69.1.27 99344 1o7qA 289 2.76e+01 c.68.1.9 92626 1p5dX 463 2.77e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1k2yX 463 2.81e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1oneA 436 2.82e+01 4enl c.1.11.1,d.54.1.1 29200,38844 1ff9A 450 2.83e+01 1ff9A c.2.1.3,d.81.1.2 30039,39954 1r5jA 337 2.85e+01 c.77.1.5 97097 1gq6A 313 2.88e+01 c.42.1.1 70341 1t8tA 271 2.89e+01 c.37.1.5 106685 1uby 367 2.90e+01 1uby a.128.1.1 19435 1klo 162 2.92e+01 1klo g.3.11.2,g.3.11.2,g.3.11.2 44326,44327,44328 1xvaA 292 2.98e+01 1xvaA c.66.1.5 34183 2ch8A 201 2.99e+01 1yy5B 513 3.04e+01 1nhs 447 3.06e+01 1nhp c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1t9bA 677 3.10e+01 1q6cA 495 3.13e+01 c.1.8.1 95970 1sxgA 280 3.32e+01 1kfwA 435 3.37e+01 c.1.8.5,d.26.3.1 77376,77377 1lqtA 456 3.47e+01 c.3.1.1,c.4.1.1 74198,74199 1i24A 404 3.47e+01 c.2.1.2 83663 1cs0A 1073 3.49e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1u2eA 289 3.54e+01 1v3hA 495 3.55e+01 c.1.8.1 108303 1gx4A 289 3.62e+01 c.68.1.9 83362 1amk 251 3.63e+01 1amk c.1.1.1 28503 1rzrA 332 3.72e+01 1eudA 311 3.77e+01 2scuA c.2.1.8,c.23.4.1 30312,31140 2a1fA 247 3.78e+01 1qlwA 328 3.84e+01 1qlwA c.69.1.15 34722 1wohA 305 3.97e+01 c.42.1.1 109446 1j0aA 325 4.00e+01 c.79.1.1 83871 1jjiA 311 4.05e+01 c.69.1.2 66766 1whsA 255 4.06e+01 1ivyA c.69.1.5 34649 2bklA 695 4.07e+01 2d1sA 548 4.11e+01 1u02A 239 4.12e+01 c.108.1.15 107538 2fiqA 420 4.15e+01 1v3vA 333 4.27e+01 b.35.1.2,c.2.1.1 108345,108346 1u0tA 307 4.28e+01 e.52.1.1 107567 1gu7A 364 4.28e+01 b.35.1.2,c.2.1.1 83321,83322 2biiA 424 4.36e+01 1fc6A 388 4.38e+01 1fc6A b.36.1.3,c.14.1.2 64738,64739 1om0A 274 4.40e+01 c.1.8.5 87058 1nnsA 326 4.46e+01 c.88.1.1 85910 1fohA 664 4.47e+01 1fohA c.3.1.2,c.47.1.10,d.16.1.2 30381,33078,37900 1qo7A 394 4.51e+01 1qo7A c.69.1.11 34697 1xt5A 135 4.51e+01 1mtzA 293 4.53e+01 c.69.1.7 79467 1nhp 447 4.55e+01 1nhp c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 2gefA 217 4.57e+01 1pn0A 665 4.57e+01 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 1evlA 401 4.61e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 1thjA 214 4.73e+01 1qreA b.81.1.5 28072 1gdeA 389 4.77e+01 c.67.1.1 60456 1xqwA 293 4.78e+01 1bjnA 360 4.84e+01 1bjnA c.67.1.4 34469 2b3yA 888 4.85e+01 1ta3A 274 4.86e+01 c.1.8.5 106731 1bu6O 501 5.02e+01 1glcG c.55.1.4,c.55.1.4 33499,33500 1wddA 477 5.02e+01 2pfkA 320 5.04e+01 3pfk c.89.1.1 35577 1y89A 238 5.23e+01 1byb 495 5.31e+01 1byb c.1.8.1 28790 1uuyA 167 5.33e+01 c.57.1.1 108059 2f5vA 595 5.38e+01 1odfA 290 5.38e+01 c.37.1.6 92782 1tzlA 622 5.43e+01 1whtA 256 5.43e+01 1ivyA c.69.1.5 34646 1aqzA 149 5.44e+01 1aqzA d.1.1.3 36238 1zud1 251 5.48e+01 1cvrA 435 5.50e+01 1cvrA b.1.18.12,c.17.1.2 21949,31006 1vknA 351 5.51e+01 c.2.1.3,d.81.1.1 108676,108677 1qreA 247 5.54e+01 1qreA b.81.1.5 28066 1nkgA 508 5.61e+01 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 1mdl 359 5.61e+01 2mnr c.1.11.2,d.54.1.1 29247,38891 1pfkA 320 5.64e+01 3pfk c.89.1.1 35575 1m1nA 491 5.66e+01 c.92.2.3 78417 1tt0A 623 5.79e+01 1mxtA 504 5.80e+01 c.3.1.2,d.16.1.1 79671,79672 1d3vA 323 5.82e+01 1d3vA c.42.1.1 32559 2gtrA 261 5.83e+01 4pgaA 337 5.86e+01 4pgaA c.88.1.1 35565 1pu5A 164 5.87e+01 b.95.1.1 104310 1oi7A 288 5.89e+01 c.2.1.8,c.23.4.1 87049,87050 1tia 279 5.91e+01 3tgl c.69.1.17 34737 1wleA 501 5.93e+01 1rljA 139 5.94e+01 c.23.5.7 104983 1vi9A 299 6.03e+01 c.72.1.5 100750 1n55A 251 6.04e+01 c.1.1.1 80007 2feaA 236 6.09e+01 1w6tA 444 6.11e+01 2cglA 489 6.14e+01 1yb5A 351 6.14e+01 1hqkA 154 6.32e+01 c.16.1.1 65902 1x0vA 354 6.35e+01 1rzuA 485 6.35e+01 c.87.1.8 105140 2fliA 220 6.38e+01 1r6uA 437 6.40e+01 c.26.1.1 97163 1esmA 316 6.55e+01 1esmA c.37.1.6 31953 1tqyB 415 6.57e+01 c.95.1.1,c.95.1.1 107247,107248 1qh8A 478 6.73e+01 1qguA c.92.2.3 35633 1qe3A 489 6.74e+01 2bce c.69.1.1 34630 1n4wA 504 6.76e+01 c.3.1.2,d.16.1.1 91676,91677 1zq1A 438 6.78e+01 1sheA 103 6.84e+01 d.274.1.1 105551 1b4vA 504 6.94e+01 1b8sA c.3.1.2,d.16.1.1 30334,37865 1hf8A 289 6.96e+01 1hg5A a.7.8.2,a.118.9.3 90354,90355 1guzA 310 7.00e+01 c.2.1.5,d.162.1.1 65586,65587 1td2A 287 7.01e+01 c.72.1.5 106765 1e2fA 215 7.02e+01 3tmkA c.37.1.1 59164 1s4nA 348 7.06e+01 c.68.1.16 98501 1z9lA 128 7.09e+01 1vkjA 285 7.16e+01 c.37.1.5 108666 1o86A 589 7.25e+01 d.92.1.5 81177 1tp9A 162 7.26e+01 1nvmB 312 7.30e+01 c.2.1.3,d.81.1.1 86251,86252 1vljA 407 7.42e+01 e.22.1.2 108832 1p3dA 475 7.50e+01 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 2c2nA 339 7.57e+01 1ukcA 522 7.67e+01 c.69.1.17 107911 1wlsA 328 7.68e+01 2a65A 519 7.76e+01 1eiwA 111 7.84e+01 1eiwA c.23.3.1 31130 1uzeA 589 7.85e+01 d.92.1.5 108174 1dbqA 289 7.88e+01 1qpzA c.93.1.1 35666 1ttuA 477 7.97e+01 b.1.18.1,b.2.5.8,b.42.7.1 107305,107306,107307 1oyzA 280 8.07e+01 a.118.1.16 93775 1gal 583 8.09e+01 1gpeA c.3.1.2,d.16.1.1 30386,37950 1dmhA 311 8.16e+01 1dmhA b.3.6.1 22633 1j0dA 341 8.33e+01 c.79.1.1 83902 1ti6A 875 8.37e+01 b.52.2.2,c.81.1.1 106974,106975 1xfiA 367 8.37e+01 e.50.1.1 109584 1tyyA 339 8.39e+01 2cuaA 135 8.41e+01 2cuaA b.6.1.2 23039 1wmbA 260 8.63e+01 1a8q 274 8.66e+01 1brt c.69.1.12 34702 1kewA 361 8.69e+01 c.2.1.2 68544 1kbvA 327 8.70e+01 b.6.1.3,b.6.1.3 68395,68396 2a14A 263 8.73e+01 1bw0A 416 8.80e+01 1bw0A c.67.1.1 34385 1zj8A 566 8.81e+01 1d3yA 301 8.83e+01 1d3yA e.12.1.1 43252 1x1tA 260 8.90e+01 2fw2A 260 8.96e+01 1hkfA 122 8.99e+01 b.1.1.1 83553 1kevA 351 8.99e+01 1pedA b.35.1.2,c.2.1.1 24749,29765