# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1uby 367 5.30e+00 1uby a.128.1.1 19435 1eyyA 510 7.85e+00 1eyyA c.82.1.1 35389 1ez0A 510 7.94e+00 1eyyA c.82.1.1 35385 1vdc 333 8.84e+00 1trb c.3.1.5,c.3.1.5 30545,30546 2c9aA 259 9.42e+00 1wqaA 455 1.44e+01 1pjcA 361 1.51e+01 1sayA c.2.1.4,c.23.12.2 30101,31361 1a6q 382 1.76e+01 1a6q a.159.1.1,d.219.1.1 75801,75802 1aqzA 149 1.82e+01 1aqzA d.1.1.3 36238 1aqzB 149 1.89e+01 1aqzA d.1.1.3 36239 1yq7A 374 1.97e+01 1ymqA 261 2.00e+01 1t6cA 315 2.52e+01 c.55.1.8,c.55.1.8 106558,106559 1oe4A 247 2.60e+01 c.18.1.3 86895 1yv5A 374 2.78e+01 2f94F 350 2.83e+01 1aoxA 203 2.88e+01 1aoxA c.62.1.1 34151 1wxaA 116 3.12e+01 1pjbA 361 3.26e+01 1sayA c.2.1.4,c.23.12.2 30103,31363 2fcr 173 3.33e+01 1rcf c.23.5.1 31151 1sayA 361 3.42e+01 1sayA c.2.1.4,c.23.12.2 30102,31362 1yhpA 212 3.46e+01 1hmy 327 3.47e+01 6mhtA c.66.1.26 34229 1wchA 315 3.52e+01 1i5gA 144 3.58e+01 1ewxA c.47.1.10 61784 1v7pC 200 3.63e+01 c.62.1.1 108408 1o6jA 150 3.92e+01 c.47.1.10 81089 1hyuA 521 3.93e+01 1hyuA c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1w1wA 430 4.27e+01 1x6mA 196 4.47e+01 2fnaA 357 4.52e+01 1a1w 91 4.59e+01 1a1z a.77.1.4 18425 2cvjA 180 4.62e+01 1rz4A 226 4.67e+01 a.4.5.53,a.118.1.18 105131,105132 1nxcA 478 4.84e+01 a.102.2.1 92293 1rom 403 4.86e+01 1rom a.104.1.1 18963 1zs9A 261 5.19e+01 1a1z 91 5.24e+01 1a1z a.77.1.4 18427 1np4A 184 5.32e+01 1np1A b.60.1.1 27166 1trb 320 5.36e+01 1trb c.3.1.5,c.3.1.5 30529,30530 1rqlA 267 5.73e+01 c.108.1.3 97750 1tde 316 5.77e+01 1trb c.3.1.5,c.3.1.5 30531,30532 1fps 348 5.84e+01 1uby a.128.1.1 19436 2fyxA 143 5.87e+01 1tw4A 125 5.91e+01 1k2fA 190 5.97e+01 b.8.1.2 68054 1cmnA 402 6.07e+01 1rom a.104.1.1 18958 1h7wA 1025 6.29e+01 1h7wA a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 1gt8A 1025 6.35e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70418,70419,70420,70421,70422 1gthC 1025 6.54e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70493,70494,70495,70496,70497 1jsg 114 6.56e+01 1a1x b.63.1.1 27513 1h7xD 1025 6.73e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15690,28635,30331,30616,39014 1uptB 60 6.79e+01 a.193.1.1 99768 1gt8B 1025 7.21e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70423,70424,70425,70426,70427 1o6dA 163 7.27e+01 c.116.1.3 92567 1jfbA 404 7.28e+01 a.104.1.1 66624 1h7wB 1025 7.33e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15684,28629,30325,30610,39008 2an1A 292 7.36e+01 1gt8D 1025 7.38e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70433,70434,70435,70436,70437 1hh8A 213 7.45e+01 1e96B a.118.8.1 61042 1xx6A 191 7.45e+01 1h7wD 1025 7.59e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15686,28631,30327,30612,39010 1f24A 402 7.63e+01 1rom a.104.1.1 18953 6mhtA 327 7.70e+01 6mhtA c.66.1.26 34226 1h7xB 1025 7.73e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15688,28633,30329,30614,39012 1rdfA 267 7.74e+01 c.108.1.3 104884 1j3wA 163 7.75e+01 d.110.7.1 90833 1lddA 74 7.79e+01 a.4.5.34 73841 1hkfA 122 7.87e+01 b.1.1.1 83553 1h7xC 1025 7.93e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15689,28634,30330,30615,39013 1mpgA 282 7.96e+01 1mpgA a.96.1.3,d.129.1.2 18747,41296 1gteA 1025 8.01e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1nkgA 508 8.04e+01 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 1xmaA 145 8.07e+01 1gthB 1025 8.07e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70488,70489,70490,70491,70492 1zxmA 400 8.13e+01 1gt8C 1025 8.15e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70428,70429,70430,70431,70432 1gteD 1025 8.31e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70455,70456,70457,70458,70459 1h7xA 1025 8.36e+01 1h7wA a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15687,28632,30328,30613,39011 1erxA 184 8.52e+01 1np1A b.60.1.1 27164 1o7kA 131 8.61e+01 d.189.1.1 81144 1xn7A 78 8.71e+01 1r4yA 136 8.81e+01 d.1.1.3 97056 1gthD 1025 8.90e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70498,70499,70500,70501,70502