# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1wqaA 455 7.92e-01 1wy0A 342 1.12e+00 1pjcA 361 1.26e+00 1sayA c.2.1.4,c.23.12.2 30101,31361 2arhA 203 1.34e+00 1pvvA 315 1.52e+00 c.78.1.1,c.78.1.1 95190,95191 2fcr 173 3.53e+00 1rcf c.23.5.1 31151 2aeuA 374 3.86e+00 1fjgP 88 4.72e+00 1emwA d.27.1.1 38444 1lxjA 104 5.07e+00 d.58.48.1 84736 1e3dA 266 5.21e+00 2frvA e.19.1.1 59188 1xx6A 191 5.34e+00 1xn7A 78 5.40e+00 1a6q 382 5.73e+00 1a6q a.159.1.1,d.219.1.1 75801,75802 1r6uA 437 5.91e+00 c.26.1.1 97163 1elvA 333 6.59e+00 5ptp b.47.1.2,g.18.1.1 59454,59455 1w44A 331 7.11e+00 1othA 321 7.25e+00 1othA c.78.1.1,c.78.1.1 35260,35261 1r88A 280 8.45e+00 c.69.1.3 97219 1wuiS 267 8.55e+00 1wmaA 276 8.84e+00 1oi7A 288 8.94e+00 c.2.1.8,c.23.4.1 87049,87050 2c6qA 351 9.00e+00 1sfe 180 9.07e+00 1sfe a.4.2.1,c.55.7.1 16073,33748 2bj7A 138 9.08e+00 1vi9A 299 9.28e+00 c.72.1.5 100750 1kt6A 183 9.36e+00 b.60.1.1 84466 1vjeA 166 9.41e+00 d.185.1.2 100807 1bazA 53 1.02e+01 1bazA a.43.1.1 17421 1ubkS 267 1.03e+01 e.19.1.1 88423 1klo 162 1.04e+01 1klo g.3.11.2,g.3.11.2,g.3.11.2 44326,44327,44328 1pswA 348 1.05e+01 c.87.1.7 88287 1nkgA 508 1.08e+01 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 1xc3A 302 1.08e+01 2gsq 202 1.15e+01 1pd21 a.45.1.1,c.47.1.5 17715,33009 1i5gA 144 1.19e+01 1ewxA c.47.1.10 61784 1lddA 74 1.21e+01 a.4.5.34 73841 2f94F 350 1.22e+01 1fmcA 255 1.25e+01 1cydA c.2.1.2 29856 1ez0A 510 1.26e+01 1eyyA c.82.1.1 35385 1oe4A 247 1.32e+01 c.18.1.3 86895 1nvmB 312 1.40e+01 c.2.1.3,d.81.1.1 86251,86252 1xknA 355 1.47e+01 1giqA 413 1.47e+01 d.166.1.1,d.166.1.1 76224,76225 1aqzA 149 1.52e+01 1aqzA d.1.1.3 36238 2cpgA 45 1.52e+01 2cpgA a.43.1.3 17455 1k4mA 213 1.53e+01 c.26.1.3 77258 1nvvS 481 1.58e+01 a.117.1.1 86279 2awiA 317 1.60e+01 1pmi 440 1.68e+01 1pmi b.82.1.3 28114 1ukuA 102 1.68e+01 d.58.5.2 99533 1jysA 242 1.69e+01 c.56.2.1 77216 1gteA 1025 1.70e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1auiB 169 1.77e+01 1auiB a.39.1.5 17325 2b99A 156 1.77e+01 1p4xA 250 1.89e+01 a.4.5.28,a.4.5.28 87784,87785 1viaA 175 1.95e+01 c.37.1.2 100754 2cuaA 135 2.00e+01 2cuaA b.6.1.2 23039 1ru3A 732 2.05e+01 e.26.1.3 97835 1srvA 145 2.08e+01 1derA c.8.5.1 30817 1vd5A 377 2.13e+01 a.102.1.7 108518 1z3eB 73 2.17e+01 1k3xA 262 2.23e+01 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1o2dA 371 2.26e+01 e.22.1.2 86591 1rp4A 389 2.27e+01 a.227.1.1 105027 1wdtA 665 2.28e+01 1jhfA 202 2.30e+01 a.4.5.2,b.87.1.1 63057,63058 2c7pA 327 2.30e+01 1vj0A 380 2.33e+01 b.35.1.2,c.2.1.1 100786,100787 1ni9A 338 2.48e+01 e.7.1.2 85739 1avqA 228 2.49e+01 1avqA c.52.1.13 33326 1y9aA 360 2.57e+01 2gtsA 86 2.60e+01 1ju2A 536 2.61e+01 c.3.1.2,d.16.1.1 77169,77170 1qy1A 174 2.75e+01 b.60.1.1 96568 1bjt 793 2.78e+01 1bjt e.11.1.1 43249 1guxA 218 2.78e+01 1guxA a.74.1.3 18388 2cyeA 133 2.78e+01 1v0wA 506 2.85e+01 d.136.1.2,d.136.1.2 108220,108221 1xt5A 135 2.87e+01 1zndA 174 2.89e+01 1yemA 179 2.92e+01 1qo7A 394 2.99e+01 1qo7A c.69.1.11 34697 1hx1B 114 3.10e+01 1hx1B a.7.7.1 61350 1qwrA 319 3.13e+01 b.82.1.3 96491 2cunA 410 3.36e+01 1yzvA 204 3.37e+01 1czaN 917 3.43e+01 1qhaA c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 1t5iA 172 3.46e+01 c.37.1.19 106450 1t6cA 315 3.48e+01 c.55.1.8,c.55.1.8 106558,106559 1uk8A 282 3.49e+01 c.69.1.10 107907 1xq6A 253 3.55e+01 1vr3A 191 3.57e+01 2fgoA 82 3.62e+01 1xszA 356 3.70e+01 2fsqA 243 3.78e+01 1h1dA 221 3.78e+01 c.66.1.1 83452 1pn0A 665 3.82e+01 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 1e9rA 437 3.84e+01 c.37.1.11 64827 2bh1A 250 3.89e+01 1zljA 78 3.91e+01 2fq4A 192 3.95e+01 1ka2A 499 4.07e+01 d.92.1.5 77305 2a6sA 84 4.11e+01 1q3iA 214 4.14e+01 d.220.1.1 104524 2bryA 497 4.16e+01 1b4pA 217 4.19e+01 a.45.1.1,c.47.1.5 83158,83159 1zjcA 418 4.20e+01 1h3nA 878 4.20e+01 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 1odkA 235 4.30e+01 c.56.2.1 86863 1lngA 87 4.30e+01 d.201.1.1 74045 1g3qA 237 4.36e+01 1hyqA c.37.1.10 60237 1yh1A 359 4.36e+01 1ynfA 458 4.37e+01 1q77A 138 4.38e+01 c.26.2.4 96023 1vdwA 254 4.41e+01 e.7.1.1 100569 2fv1A 377 4.45e+01 1vkyA 347 4.52e+01 e.53.1.1 108696 1upaA 573 4.54e+01 c.31.1.3,c.36.1.5,c.36.1.9 99714,99715,99716 2aebA 322 4.54e+01 2c4jA 218 4.60e+01 1zq6A 359 4.71e+01 1y89A 238 4.72e+01 1f06A 320 4.80e+01 1dapA c.2.1.3,d.81.1.3 59556,59557 1b8dA 164 4.83e+01 1cpcA a.1.1.3 15665 1ivyA 452 4.88e+01 1ivyA c.69.1.5 34654 1vr5A 547 4.89e+01 1i3cA 149 4.90e+01 c.23.1.1 71112 1kqfA 1015 4.92e+01 b.52.2.2,c.81.1.1 72871,72872 1q79A 514 4.93e+01 a.160.1.1,d.218.1.3,d.58.16.1 104548,104549,104550 1dzkA 157 4.96e+01 1obpA b.60.1.1 27096 1xyzA 347 5.05e+01 1taxA c.1.8.3 28804 2f6hX 419 5.05e+01 1yfqA 342 5.09e+01 1d3vA 323 5.12e+01 1d3vA c.42.1.1 32559 2aeeA 211 5.12e+01 2an1A 292 5.16e+01 1rzsA 61 5.20e+01 a.35.1.2 105139 1yj7A 171 5.28e+01 1ji7A 89 5.33e+01 a.60.1.1 71682 1l1lA 739 5.34e+01 c.7.1.4 73470 1h4vB 421 5.38e+01 1adjA c.51.1.1,d.104.1.1 60624,60625 1uv7A 110 5.44e+01 d.67.4.1 100040 1wm1A 317 5.54e+01 c.69.1.7 109405 1l6sA 323 5.55e+01 c.1.10.3 73627 2g5cA 281 5.56e+01 1mzbA 136 5.61e+01 a.4.5.42 91497 2cfxA 144 5.64e+01 1dl5A 317 5.66e+01 1dl5A c.66.1.7,d.197.1.1 64720,64721 1xmkA 79 5.70e+01 1irdB 146 5.73e+01 a.1.1.2 66287 1noyA 388 5.75e+01 1clqA c.55.3.5 33713 2apoA 357 5.77e+01 2aa1A 144 5.80e+01 1l1eA 287 5.80e+01 c.66.1.18 73454 1ekeA 230 5.86e+01 1ekeA c.55.3.1 33572 1ztdA 133 5.87e+01 1l8aA 886 5.91e+01 c.36.1.10,c.36.1.6,c.48.1.1 73677,73678,73679 1euhA 475 5.98e+01 1euhA c.82.1.1 35369 2es9A 115 6.05e+01 1xt8A 292 6.05e+01 1wohA 305 6.06e+01 c.42.1.1 109446 1o6dA 163 6.07e+01 c.116.1.3 92567 1nf1A 333 6.07e+01 1nf1A a.116.1.2 19110 1zpvA 91 6.09e+01 2dexX 671 6.12e+01 2biiA 424 6.15e+01 1y02A 120 6.19e+01 1lhpA 312 6.22e+01 c.72.1.5 77960 2cbiA 594 6.27e+01 2fu2A 102 6.31e+01 1kqqA 139 6.41e+01 a.4.3.1 72885 1zrn 232 6.42e+01 1qq5A c.108.1.1 43323 1yseA 141 6.45e+01 1sc6A 404 6.46e+01 1bdb 277 6.57e+01 1bdb c.2.1.2 29874 1s3eA 520 6.61e+01 c.3.1.2,d.16.1.5 98426,98427 1ie9A 259 6.64e+01 1db1A a.123.1.1 62318 1vdc 333 6.68e+01 1trb c.3.1.5,c.3.1.5 30545,30546 1o17A 345 6.76e+01 a.46.2.1,c.27.1.1 80765,80766 1k66A 149 6.78e+01 c.23.1.1 90941 1vqzA 341 6.79e+01 1z8oA 404 6.85e+01 2ap1A 327 6.89e+01 1gefA 123 6.92e+01 1gefA c.52.1.18 60465 2bw3A 534 6.94e+01 1kid 203 7.01e+01 1derA c.8.5.1 30771 1qfhA 212 7.08e+01 1qfhA b.1.18.10,b.1.18.10 21893,21894 2c07A 285 7.10e+01 1u5tA 233 7.10e+01 a.4.5.54,a.4.5.54 107684,107685 1uzbA 516 7.31e+01 c.82.1.1 100220 1a6m 151 7.37e+01 1a6m a.1.1.2 15018 1g2iA 166 7.45e+01 1g2iA c.23.16.2 31438 1wdiA 345 7.48e+01 1t2bA 397 7.73e+01 1gw5S 142 7.73e+01 d.110.4.2 70633 1wpoA 256 7.76e+01 1lay b.57.1.1 27012 2anuA 255 7.77e+01 1xviA 275 7.81e+01 2h2tB 175 7.99e+01 1vpjA 192 8.04e+01 1tbd 134 8.04e+01 2tbd d.89.1.1 40240 1gkpA 458 8.16e+01 b.92.1.3,c.1.9.6 70231,70232 1bebA 162 8.24e+01 1bebA b.60.1.1 27115 1j2zA 270 8.31e+01 b.81.1.1 90805 1f9vA 347 8.32e+01 1bg2 c.37.1.9 59745 2g0cA 76 8.37e+01 1ub9A 100 8.43e+01 a.4.5.28 99159 1wmiA 90 8.46e+01 2a67A 167 8.49e+01 1njrA 284 8.55e+01 c.50.1.2 103858 1b8oA 284 8.62e+01 1b8oA c.56.2.1 33762 1oaoC 729 8.62e+01 e.26.1.3 86746 1geeA 261 8.64e+01 c.2.1.2 90509 1pueE 89 8.74e+01 1awcA a.4.5.21 16165 1w0pA 781 8.83e+01 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1g66A 207 8.86e+01 1bs9 c.69.1.30 31329 1jayA 212 8.86e+01 c.2.1.6 66478 1x6vA 630 8.96e+01