# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vheA 373 2.09e-01 b.49.3.1,c.56.5.4 100669,100670 1q7zA 566 7.14e-01 c.1.21.2,c.1.26.1 96090,96091 1zczA 464 8.29e-01 1wqaA 455 1.01e+00 1tbd 134 1.10e+00 2tbd d.89.1.1 40240 1y0yA 353 1.16e+00 1xc3A 302 1.51e+00 1jeyA 609 1.81e+00 1jeqA b.131.1.1,c.62.1.3 90370,90371 2ffeA 311 2.02e+00 2c78A 405 2.09e+00 1o2dA 371 2.20e+00 e.22.1.2 86591 1aisB 200 2.22e+00 1aisB a.74.1.2,a.74.1.2 18384,18385 1ht6A 405 2.37e+00 b.71.1.1,c.1.8.1 83629,83630 1pvvA 315 2.48e+00 c.78.1.1,c.78.1.1 95190,95191 2c6qA 351 2.82e+00 1rz1A 161 3.03e+00 b.45.1.2 98124 1xahA 354 3.37e+00 1c7qA 445 3.52e+00 2pgi c.80.1.2 35307 1ymqA 261 3.54e+00 1vp4A 425 4.12e+00 1vjjA 692 4.18e+00 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 100814,100815,100816,100817 1iyeA 309 4.51e+00 e.17.1.1 83786 1wleA 501 4.59e+00 1ysjA 404 4.61e+00 1ob8A 135 4.71e+00 3chbD 104 5.04e+00 3chbD b.40.2.1 24970 2arhA 203 5.66e+00 1lvwA 295 5.82e+00 c.68.1.6 84723 2chnA 716 6.04e+00 2bz1A 196 6.11e+00 1a6q 382 6.36e+00 1a6q a.159.1.1,d.219.1.1 75801,75802 2d00A 109 6.40e+00 2dcnA 311 6.47e+00 1e9rA 437 6.93e+00 c.37.1.11 64827 1g3qA 237 7.38e+00 1hyqA c.37.1.10 60237 2bhvA 246 8.39e+00 1oz9A 150 8.40e+00 d.92.1.15 93808 1k0eA 453 9.33e+00 d.161.1.1 67938 2a5dA 175 9.61e+00 2f5gA 133 9.79e+00 1zpvA 91 1.01e+01 2b0jA 358 1.08e+01 1cvrA 435 1.08e+01 1cvrA b.1.18.12,c.17.1.2 21949,31006 1ejeA 192 1.11e+01 1ejeA b.45.1.2 25757 2f51A 118 1.18e+01 1ooeA 236 1.21e+01 c.2.1.2 87196 1g94A 448 1.21e+01 b.71.1.1,c.1.8.1 65169,65170 1ve0A 134 1.25e+01 1zarA 282 1.25e+01 1h70A 255 1.27e+01 1h70A d.126.1.3 60711 1gx3A 284 1.30e+01 d.3.1.5 70678 1qysA 106 1.30e+01 k.41.1.1 96603 1kv7A 488 1.31e+01 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 1shyB 551 1.42e+01 b.69.12.1,g.16.2.1 105565,105566 2fbiA 142 1.43e+01 1geqA 248 1.46e+01 2tysA c.1.2.4 28589 1lc5A 364 1.47e+01 c.67.1.1 73827 1w5rA 278 1.49e+01 1v04A 355 1.52e+01 b.68.6.2 100240 1ryiA 382 1.55e+01 2fckA 181 1.58e+01 1j1tA 233 1.62e+01 b.29.1.18 90771 3ullA 132 1.66e+01 3ullA b.40.4.3 25282 1kq3A 376 1.68e+01 e.22.1.2 68790 1wdiA 345 1.69e+01 1sviA 195 1.70e+01 c.37.1.8 106048 2gptA 523 1.72e+01 1wr8A 231 1.72e+01 1yb0A 159 1.72e+01 1yhpA 212 1.73e+01 2dbbA 151 1.81e+01 2a1iA 146 1.88e+01 1w0pA 781 1.92e+01 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1wtaA 275 2.01e+01 1u7lA 392 2.08e+01 1fc6A 388 2.10e+01 1fc6A b.36.1.3,c.14.1.2 64738,64739 1fjgP 88 2.21e+01 1emwA d.27.1.1 38444 1oc2A 348 2.25e+01 c.2.1.2 92765 1xx6A 191 2.28e+01 1kid 203 2.31e+01 1derA c.8.5.1 30771 1uirA 314 2.38e+01 c.66.1.17 99429 2f4nA 273 2.39e+01 1g2iA 166 2.47e+01 1g2iA c.23.16.2 31438 2gf9A 189 2.47e+01 1w77A 228 2.49e+01 1o3yA 166 2.51e+01 c.37.1.8 86618 1qo0D 196 2.53e+01 1qo0D c.23.1.3 31125 1prxA 224 2.56e+01 1prxA c.47.1.10 33076 1sdsA 117 2.71e+01 d.79.3.1 105439 2akoA 251 2.76e+01 2cuaA 135 2.78e+01 2cuaA b.6.1.2 23039 1yavA 159 2.79e+01 1o7jA 327 2.82e+01 c.88.1.1 81140 2f46A 156 2.85e+01 1uc8A 280 2.86e+01 c.30.1.6,d.142.1.7 99165,99166 1nhcA 336 2.90e+01 b.80.1.3 91879 1t9bA 677 2.90e+01 1tzjA 338 2.91e+01 3pviA 157 2.93e+01 3pviA c.52.1.6 33300 1r6uA 437 2.94e+01 c.26.1.1 97163 2cw5A 255 3.00e+01 1twdA 256 3.02e+01 c.1.30.1 107397 2bsxA 253 3.08e+01 1vjeA 166 3.13e+01 d.185.1.2 100807 2cnqA 306 3.20e+01 1jmtA 104 3.23e+01 d.58.7.3 63180 1y7bA 542 3.26e+01 2c7pA 327 3.27e+01 1vggA 161 3.35e+01 1fnlA 175 3.37e+01 2fcbA b.1.1.4,b.1.1.4 21783,21784 1bw0A 416 3.39e+01 1bw0A c.67.1.1 34385 1h3nA 878 3.41e+01 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 1v60A 123 3.42e+01 1bif 469 3.44e+01 1bif c.37.1.7,c.60.1.4 31961,34003 1ta3A 274 3.49e+01 c.1.8.5 106731 1gefA 123 3.50e+01 1gefA c.52.1.18 60465 1zaiA 363 3.52e+01 1yymG 313 3.67e+01 1wwiA 148 3.67e+01 2bryA 497 3.77e+01 1yc5A 246 3.77e+01 2bhuA 602 3.80e+01 1kafA 108 3.81e+01 d.199.1.1 68372 1rhfA 182 3.84e+01 b.1.1.1,b.1.1.4 97469,97470 1pot 325 3.88e+01 1pot c.94.1.1 35807 1l8aA 886 3.95e+01 c.36.1.10,c.36.1.6,c.48.1.1 73677,73678,73679 1uayA 242 3.98e+01 c.2.1.2 88390 2d1sA 548 4.00e+01 1efpB 252 4.04e+01 1efvB c.26.2.3 31636 2c1lA 358 4.05e+01 1yp2A 451 4.15e+01 4pgaA 337 4.16e+01 4pgaA c.88.1.1 35565 1gtmA 419 4.18e+01 1hwyA c.2.1.7,c.58.1.1 30223,33871 1dqpA 230 4.19e+01 1dqnA c.61.1.1 34069 1ww9A 392 4.26e+01 2ca6A 386 4.27e+01 1r6xA 395 4.27e+01 b.122.1.3,c.26.1.5 97167,97168 1aocA 175 4.28e+01 1aocA g.17.1.5 44817 1v6tA 255 4.30e+01 1oneA 436 4.33e+01 4enl c.1.11.1,d.54.1.1 29200,38844 1rzsA 61 4.38e+01 a.35.1.2 105139 1rhs 296 4.39e+01 1rhs c.46.1.2,c.46.1.2 32703,32704 2bynA 227 4.40e+01 2fh1A 344 4.41e+01 1k4mA 213 4.44e+01 c.26.1.3 77258 1p4xA 250 4.47e+01 a.4.5.28,a.4.5.28 87784,87785 1b8oA 284 4.48e+01 1b8oA c.56.2.1 33762 2al2A 436 4.49e+01 1gegA 256 4.50e+01 1ybvA c.2.1.2 29888 1g66A 207 4.57e+01 1bs9 c.69.1.30 31329 2aebA 322 4.59e+01 1ujpA 271 4.65e+01 c.1.2.4 99462 1vdwA 254 4.65e+01 e.7.1.1 100569 1xbiA 120 4.66e+01 2bkrA 212 4.72e+01 2h2tB 175 4.82e+01 1tqjA 230 4.83e+01 c.1.2.2 107228 2fcr 173 4.88e+01 1rcf c.23.5.1 31151 1zz1A 369 4.88e+01 1p2fA 220 4.89e+01 a.4.6.1,c.23.1.1 87720,87721 1zjrA 211 4.91e+01 1aqzA 149 4.93e+01 1aqzA d.1.1.3 36238 1r5lA 262 4.94e+01 a.5.3.1,c.13.1.1 97099,97100 1ohlA 342 4.96e+01 c.1.10.3 87035 2b3nA 159 4.98e+01 1kb0A 677 5.02e+01 a.3.1.6,b.70.1.1 68378,68379 2g5cA 281 5.03e+01 1ywxA 102 5.05e+01 1mr3F 181 5.09e+01 c.37.1.8 79422 1v9nA 360 5.12e+01 1euhA 475 5.14e+01 1euhA c.82.1.1 35369 1hl2A 297 5.24e+01 c.1.10.1 83581 1yreA 197 5.30e+01 1jli 112 5.36e+01 1jli a.26.1.2 16884 1xkyA 301 5.36e+01 1h1nA 305 5.38e+01 c.1.8.3 70855 2al1A 436 5.44e+01 1okgA 373 5.50e+01 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1djrD 103 5.55e+01 3chbD b.40.2.1 24865 1ugpA 203 5.57e+01 d.149.1.1 107831 1zd3A 555 5.62e+01 1jh3A 107 5.66e+01 d.66.1.4 71661 1i0lA 221 5.69e+01 c.61.1.1 71096 1szoA 257 5.75e+01 c.14.1.3 106164 1ur1A 378 5.77e+01 c.1.8.3 99804 1v84A 253 5.89e+01 c.68.1.7 108419 1m93B 245 5.96e+01 1st9A 143 6.05e+01 c.47.1.10 98987 1bqk 124 6.06e+01 1bqk b.6.1.1 22889 1hgxA 183 6.11e+01 1tc1A c.61.1.1 34027 2a8yA 270 6.14e+01 1jmsA 381 6.15e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1xknA 355 6.16e+01 1wstA 417 6.18e+01 2f9sA 151 6.19e+01 1oq9A 363 6.20e+01 a.25.1.2 87257 1kdoA 227 6.20e+01 c.37.1.1 68478 1pmi 440 6.25e+01 1pmi b.82.1.3 28114 1r4xA 275 6.27e+01 b.1.10.3,d.105.1.2 97054,97055 1xccA 220 6.29e+01 1kblA 873 6.30e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1wy7A 207 6.30e+01 2bgkA 278 6.36e+01 1o57A 291 6.45e+01 a.4.5.40,c.61.1.1 92483,92484 1fmcA 255 6.47e+01 1cydA c.2.1.2 29856 1wy2A 351 6.57e+01 1pea 385 6.75e+01 1pea c.93.1.1 35662 2bo4A 397 6.78e+01 1xrsA 516 6.79e+01 2cunA 410 6.85e+01 1j0dA 341 6.88e+01 c.79.1.1 83902 2ff4A 388 7.01e+01 1u5tA 233 7.02e+01 a.4.5.54,a.4.5.54 107684,107685 2bpa1 426 7.05e+01 2bpa1 2gukA 120 7.05e+01 1k2xB 143 7.11e+01 1np7A 489 7.15e+01 a.99.1.1,c.28.1.1 80677,80678 1yal 218 7.19e+01 1cs8A d.3.1.1 37025 1gpiA 431 7.20e+01 b.29.1.10 65450 2cxcA 144 7.26e+01 1q2lA 939 7.30e+01 1hw7A 255 7.31e+01 1i7fA d.193.1.1 61297 1krhA 338 7.37e+01 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 1y1oA 203 7.41e+01 1qb5D 99 7.42e+01 b.40.2.1 88357 2cbiA 594 7.50e+01 2cb2A 318 7.53e+01 1tz9A 367 7.54e+01 c.1.15.6 107466 1t7lA 766 7.60e+01 1tc1A 220 7.61e+01 1tc1A c.61.1.1 34083 1m4jA 142 7.63e+01 d.109.1.2 78602 2g8jA 339 7.65e+01 1tl9A 339 7.75e+01 1fobA 334 7.75e+01 c.1.8.3 83255 7odcA 424 7.82e+01 7odcA b.49.2.3,c.1.6.1 26488,28650 1bykA 255 7.87e+01 1bykA c.93.1.1 35706 1q1aA 289 7.87e+01 c.31.1.5 95561 1l7mA 211 7.89e+01 c.108.1.4 73664 1kv0A 66 7.98e+01 g.3.7.1 91040 2fb1A 226 8.00e+01 1rttA 193 8.02e+01 c.23.5.4 105098 1t5iA 172 8.12e+01 c.37.1.19 106450 1jf9A 408 8.24e+01 1c0nA c.67.1.3 62931 1odkA 235 8.35e+01 c.56.2.1 86863 1xmbA 418 8.45e+01 1nr0A 611 8.46e+01 b.69.4.1,b.69.4.1 86078,86079 2av4A 162 8.47e+01 1vjqA 79 8.54e+01 k.43.1.1 100830 1ursA 402 8.60e+01 c.94.1.1 99833 2gtrA 261 8.80e+01 1r5tA 142 8.85e+01 c.97.1.1 104812 2bmaA 470 8.86e+01 2d8dA 90 8.88e+01 1yacA 208 8.91e+01 1yacA c.33.1.3 31757 1nwwA 149 8.98e+01 d.17.4.8 86306