# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2f94F 350 7.06e-01 1pjcA 361 9.28e-01 1sayA c.2.1.4,c.23.12.2 30101,31361 1xx6A 191 1.97e+00 1a6q 382 2.79e+00 1a6q a.159.1.1,d.219.1.1 75801,75802 1xc3A 302 3.28e+00 1wqaA 455 3.35e+00 1aqzA 149 3.49e+00 1aqzA d.1.1.3 36238 1wuiS 267 5.26e+00 1ubkS 267 5.34e+00 e.19.1.1 88423 1vj0A 380 5.95e+00 b.35.1.2,c.2.1.1 100786,100787 1vdc 333 6.06e+00 1trb c.3.1.5,c.3.1.5 30545,30546 1gteA 1025 6.12e+00 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1r6uA 437 6.22e+00 c.26.1.1 97163 1oe4A 247 6.38e+00 c.18.1.3 86895 1uk8A 282 6.57e+00 c.69.1.10 107907 2ez3A 302 6.64e+00 1e3dA 266 7.28e+00 2frvA e.19.1.1 59188 1ni9A 338 8.08e+00 e.7.1.2 85739 2a65A 519 8.22e+00 1x6mA 196 8.30e+00 1nvmB 312 9.73e+00 c.2.1.3,d.81.1.1 86251,86252 1fjgP 88 1.01e+01 1emwA d.27.1.1 38444 1o6dA 163 1.22e+01 c.116.1.3 92567 1i5gA 144 1.29e+01 1ewxA c.47.1.10 61784 1xknA 355 1.33e+01 2arhA 203 1.33e+01 1pvvA 315 1.47e+01 c.78.1.1,c.78.1.1 95190,95191 2cdcA 366 1.47e+01 1zxmA 400 1.47e+01 1io7A 368 1.51e+01 1f4tA a.104.1.1 18971 1w44A 331 1.54e+01 2cvjA 180 1.72e+01 1xn7A 78 1.76e+01 2aeuA 374 1.88e+01 2fnaA 357 2.04e+01 1ez0A 510 2.09e+01 1eyyA c.82.1.1 35385 1qo7A 394 2.12e+01 1qo7A c.69.1.11 34697 1kbvA 327 2.18e+01 b.6.1.3,b.6.1.3 68395,68396 1trb 320 2.19e+01 1trb c.3.1.5,c.3.1.5 30529,30530 2fcr 173 2.28e+01 1rcf c.23.5.1 31151 1wqsA 173 2.46e+01 1q77A 138 2.57e+01 c.26.2.4 96023 2a0mA 316 2.62e+01 1wdtA 665 2.79e+01 1h3nA 878 2.79e+01 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 1nxuA 333 2.93e+01 c.122.1.1 86389 1zjjA 263 2.94e+01 1bc5A 269 2.97e+01 1af7 a.58.1.1,c.66.1.8 17929,34204 1af7 274 3.04e+01 1af7 a.58.1.1,c.66.1.8 17928,34203 1fl2A 310 3.16e+01 1hyuA c.3.1.5,c.3.1.5 59869,59870 1yfqA 342 3.34e+01 1v0wA 506 3.47e+01 d.136.1.2,d.136.1.2 108220,108221 1vknA 351 3.48e+01 c.2.1.3,d.81.1.1 108676,108677 2c6qA 351 3.49e+01 1d3vA 323 3.51e+01 1d3vA c.42.1.1 32559 1uptB 60 3.54e+01 a.193.1.1 99768 2gv8A 447 3.73e+01 1v6tA 255 3.73e+01 1a9xA 1058 3.73e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 1l6sA 323 3.87e+01 c.1.10.3 73627 1rp4A 389 3.90e+01 a.227.1.1 105027 2ffcA 353 3.95e+01 1o2dA 371 4.01e+01 e.22.1.2 86591 2hvm 273 4.17e+01 1cnv c.1.8.5 28985 1vi9A 299 4.17e+01 c.72.1.5 100750 1yemA 179 4.31e+01 2an1A 292 4.36e+01 1yhpA 212 4.46e+01 2cqsA 842 4.55e+01 1nkgA 508 4.55e+01 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 1jfbA 404 4.63e+01 a.104.1.1 66624 2fdsA 352 4.74e+01 1vdwA 254 4.76e+01 e.7.1.1 100569 1aisB 200 4.88e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 1u5tA 233 4.93e+01 a.4.5.54,a.4.5.54 107684,107685 1oi7A 288 5.00e+01 c.2.1.8,c.23.4.1 87049,87050 1ys4A 354 5.00e+01 1wchA 315 5.02e+01 1euhA 475 5.15e+01 1euhA c.82.1.1 35369 1shyB 551 5.18e+01 b.69.12.1,g.16.2.1 105565,105566 1nd4A 264 5.29e+01 d.144.1.6 91815 1qouA 181 5.36e+01 1qouA b.17.1.1 23707 1dm5A 315 5.42e+01 1avc a.65.1.1 18186 1y89A 238 5.44e+01 1o17A 345 5.45e+01 a.46.2.1,c.27.1.1 80765,80766 1odfA 290 5.48e+01 c.37.1.6 92782 1ttuA 477 5.49e+01 b.1.18.1,b.2.5.8,b.42.7.1 107305,107306,107307 1ne7A 289 5.52e+01 c.124.1.1 91833 1up8A 598 5.60e+01 a.111.1.2 99710 1z41A 338 5.77e+01 1y02A 120 5.90e+01 2cunA 410 6.02e+01 1vkhA 273 6.15e+01 c.69.1.32 108662 1epxA 370 6.17e+01 1fbaA c.1.10.1 29150 1gu7A 364 6.23e+01 b.35.1.2,c.2.1.1 83321,83322 1vjqA 79 6.26e+01 k.43.1.1 100830 1wvfA 520 6.27e+01 1lhpA 312 6.44e+01 c.72.1.5 77960 1vr5A 547 6.48e+01 1sfe 180 6.54e+01 1sfe a.4.2.1,c.55.7.1 16073,33748 1luaA 287 6.85e+01 c.2.1.7,c.58.1.4 78216,78217 1pswA 348 6.86e+01 c.87.1.7 88287 1z8gA 372 6.86e+01 1elvA 333 6.91e+01 5ptp b.47.1.2,g.18.1.1 59454,59455 1z8oA 404 6.98e+01 1t2bA 397 7.24e+01 1lddA 74 7.26e+01 a.4.5.34 73841 1z7xW 461 7.36e+01 1pot 325 7.38e+01 1pot c.94.1.1 35807 1rtwA 220 7.53e+01 a.132.1.3 97823 1pmnA 364 7.64e+01 d.144.1.7 94907 1whsA 255 7.72e+01 1ivyA c.69.1.5 34649 1u8xX 472 7.91e+01 c.2.1.5,d.162.1.2 107741,107742 2d8qA 70 8.22e+01 2f51A 118 8.28e+01 2c7pA 327 8.32e+01 1pe9A 361 8.37e+01 b.80.1.1 94595 1zljA 78 8.42e+01 1dbqA 289 8.45e+01 1qpzA c.93.1.1 35666 1i88A 389 8.46e+01 c.95.1.2,c.95.1.2 66070,66071 1l1lA 739 8.56e+01 c.7.1.4 73470 1k4mA 213 8.59e+01 c.26.1.3 77258 1gq8A 319 8.61e+01 b.80.1.5 70350 2gtsA 86 8.66e+01 1klo 162 8.67e+01 1klo g.3.11.2,g.3.11.2,g.3.11.2 44326,44327,44328 2afwA 329 8.74e+01 1avqA 228 8.81e+01 1avqA c.52.1.13 33326 1gveA 327 8.82e+01 c.1.7.1 70597 1fseA 74 8.83e+01 1fseA a.4.6.2 60000 1e0tA 470 8.84e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 1i24A 404 8.86e+01 c.2.1.2 83663 1m6sA 347 8.99e+01 c.67.1.1 78701 1bcpF 99 8.99e+01 1prtF b.40.2.1 25142 2g9iA 249 9.00e+01