# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1wqaA 455 1.40e-01 1vheA 373 4.11e-01 b.49.3.1,c.56.5.4 100669,100670 1zczA 464 6.26e-01 1q7zA 566 1.30e+00 c.1.21.2,c.1.26.1 96090,96091 1o2dA 371 1.79e+00 e.22.1.2 86591 1pjqA 457 1.95e+00 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1vp4A 425 2.11e+00 1amy 403 2.15e+00 1jdc b.71.1.1,c.1.8.1 27799,28786 1w1wA 430 2.18e+00 1phk 298 3.15e+00 1cdkA d.144.1.7 41635 1avaA 403 3.35e+00 1jdc b.71.1.1,c.1.8.1 27797,28784 1ymqA 261 3.62e+00 1xfoA 357 3.64e+00 1g94A 448 3.98e+00 b.71.1.1,c.1.8.1 65169,65170 1xc3A 302 4.08e+00 1tbd 134 4.17e+00 2tbd d.89.1.1 40240 3chbD 104 4.20e+00 3chbD b.40.2.1 24970 1rz1A 161 4.30e+00 b.45.1.2 98124 1i1kA 309 4.62e+00 1daaA e.17.1.1 61533 2fckA 181 4.92e+00 2d00A 109 5.16e+00 1lvwA 295 5.18e+00 c.68.1.6 84723 1iyeA 309 5.26e+00 e.17.1.1 83786 1ht6A 405 5.57e+00 b.71.1.1,c.1.8.1 83629,83630 2chnA 716 5.65e+00 1g3qA 237 6.27e+00 1hyqA c.37.1.10 60237 1wleA 501 6.34e+00 1lc5A 364 7.99e+00 c.67.1.1 73827 1ejeA 192 8.30e+00 1ejeA b.45.1.2 25757 1xahA 354 8.58e+00 2fbiA 142 8.64e+00 1n7oA 721 8.68e+00 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 2bhuA 602 9.05e+00 1eguA 731 9.93e+00 1eguA a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 1vjjA 692 9.94e+00 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 100814,100815,100816,100817 2dbbA 151 1.03e+01 1ob8A 135 1.10e+01 2f5gA 133 1.12e+01 1oz9A 150 1.16e+01 d.92.1.15 93808 2bhvA 246 1.18e+01 1hgxA 183 1.19e+01 1tc1A c.61.1.1 34027 1zpvA 91 1.25e+01 1e9rA 437 1.27e+01 c.37.1.11 64827 1wdiA 345 1.29e+01 2c6qA 351 1.33e+01 1kepA 348 1.34e+01 c.2.1.2 68536 1q1aA 289 1.36e+01 c.31.1.5 95561 1oc2A 348 1.40e+01 c.2.1.2 92765 2bznA 351 1.43e+01 4pgaA 337 1.45e+01 4pgaA c.88.1.1 35565 1ooeA 236 1.46e+01 c.2.1.2 87196 1y0yA 353 1.47e+01 2c78A 405 1.49e+01 1kv9A 668 1.49e+01 a.3.1.6,b.70.1.1 73056,73057 1jeyA 609 1.53e+01 1jeqA b.131.1.1,c.62.1.3 90370,90371 1yhpA 212 1.59e+01 1qo0D 196 1.59e+01 1qo0D c.23.1.3 31125 2cw5A 255 1.64e+01 2f46A 156 1.65e+01 1e5eA 404 1.68e+01 1ibjA c.67.1.3 59265 1gegA 256 1.69e+01 1ybvA c.2.1.2 29888 1ha3A 405 1.71e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 60869,60870,60871 1exmA 405 1.74e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25696,25736,32131 1kv7A 488 1.85e+01 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 2b0jA 358 1.85e+01 2a5dA 175 1.86e+01 1k0eA 453 1.87e+01 d.161.1.1 67938 1tl0D 103 1.93e+01 1aisB 200 1.93e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 1w0pA 781 1.96e+01 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 2a1iA 146 1.99e+01 1sviA 195 2.00e+01 c.37.1.8 106048 1qysA 106 2.03e+01 k.41.1.1 96603 1kit 757 2.05e+01 1kit b.29.1.8,b.29.1.8,b.68.1.1 24272,24273,27616 1aqm 453 2.07e+01 1smd b.71.1.1,c.1.8.1 27717,28704 1ysjA 404 2.08e+01 2arhA 203 2.18e+01 2ffeA 311 2.26e+01 1v6tA 255 2.35e+01 2bz1A 196 2.39e+01 1jmtA 104 2.43e+01 d.58.7.3 63180 2atxA 194 2.46e+01 1wtaA 275 2.49e+01 1gcoA 261 2.55e+01 1ybvA c.2.1.2 29884 1geeA 261 2.55e+01 c.2.1.2 90509 2d1sA 548 2.56e+01 1xx6A 191 2.60e+01 1uc8A 280 2.62e+01 c.30.1.6,d.142.1.7 99165,99166 2eueA 279 2.64e+01 1tqmA 282 2.65e+01 a.4.5.56,d.144.1.9 107236,107237 2fvgA 340 2.66e+01 1zarA 282 2.66e+01 1h70A 255 2.67e+01 1h70A d.126.1.3 60711 1v04A 355 2.68e+01 b.68.6.2 100240 1xbsA 149 2.70e+01 3ullA 132 2.71e+01 3ullA b.40.4.3 25282 1pvvA 315 2.75e+01 c.78.1.1,c.78.1.1 95190,95191 2bynA 227 2.81e+01 1u1hA 765 2.84e+01 c.1.22.2,c.1.22.2 107580,107581 1lci 550 2.91e+01 1lci e.23.1.1 43349 1uirA 314 2.91e+01 c.66.1.17 99429 1o7jA 327 2.98e+01 c.88.1.1 81140 1uayA 242 3.03e+01 c.2.1.2 88390 2ge3A 170 3.20e+01 1fjgP 88 3.25e+01 1emwA d.27.1.1 38444 1yloA 348 3.27e+01 1wwiA 148 3.28e+01 1lvaA 258 3.32e+01 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1o7nA 449 3.33e+01 b.33.1.2,d.129.3.3 81162,81163 1eg9A 449 3.34e+01 1ndoA b.33.1.2,d.129.3.3 24443,41322 1kq3A 376 3.38e+01 e.22.1.2 68790 1ww9A 392 3.41e+01 1a48 306 3.42e+01 1a48 d.143.1.1 41590 1y7bA 542 3.43e+01 1pdz 434 3.44e+01 4enl c.1.11.1,d.54.1.1 29215,38859 1rhfA 182 3.44e+01 b.1.1.1,b.1.1.4 97469,97470 1cvrA 435 3.45e+01 1cvrA b.1.18.12,c.17.1.2 21949,31006 1lp3A 519 3.48e+01 b.121.5.2 74169 2fy7A 287 3.49e+01 1twdA 256 3.51e+01 c.1.30.1 107397 1euhA 475 3.52e+01 1euhA c.82.1.1 35369 1yp2A 451 3.53e+01 2f51A 118 3.57e+01 2f9sA 151 3.59e+01 1lt5D 103 3.64e+01 3chbD b.40.2.1 24875 1nhcA 336 3.65e+01 b.80.1.3 91879 2c7pA 327 3.69e+01 1st9A 143 3.70e+01 c.47.1.10 98987 1ng4A 390 3.73e+01 c.3.1.2,d.16.1.3 85666,85667 2gf9A 189 3.74e+01 1ryiA 382 3.76e+01 1zjrA 211 3.79e+01 1ursA 402 3.80e+01 c.94.1.1 99833 1ojxA 263 3.80e+01 c.1.10.1 93164 1fa0A 537 3.92e+01 1fa0B d.58.16.1,a.160.1.1,d.218.1.3 39335,75837,75838 1dqnA 230 3.94e+01 1dqnA c.61.1.1 34067 2bryA 497 3.95e+01 1o5zA 442 3.98e+01 c.59.1.2,c.72.2.2 92530,92531 1aocA 175 4.01e+01 1aocA g.17.1.5 44817 1yavA 159 4.08e+01 4enl 436 4.11e+01 4enl c.1.11.1,d.54.1.1 29202,38846 2bleA 367 4.13e+01 1fc6A 388 4.14e+01 1fc6A b.36.1.3,c.14.1.2 64738,64739 1u7lA 392 4.16e+01 1mp8A 281 4.17e+01 d.144.1.7 91384 1aszB 490 4.17e+01 1b8aA b.40.4.1,d.104.1.1 25241,40762 1egaA 301 4.27e+01 1egaA c.37.1.8,d.52.3.1 32150,38836 1wr8A 231 4.45e+01 1shyB 551 4.45e+01 b.69.12.1,g.16.2.1 105565,105566 1a6q 382 4.46e+01 1a6q a.159.1.1,d.219.1.1 75801,75802 1fnlA 175 4.61e+01 2fcbA b.1.1.4,b.1.1.4 21783,21784 1rzsA 61 4.61e+01 a.35.1.2 105139 1fxjA 331 4.64e+01 1fwyA b.81.1.4,c.68.1.5 28062,34520 1o8uA 257 4.67e+01 c.14.1.3 81194 1prxA 224 4.70e+01 1prxA c.47.1.10 33076 1qe5A 266 4.78e+01 1b8oA c.56.2.1 33784 6mhtA 327 4.79e+01 6mhtA c.66.1.26 34226 1djrD 103 4.79e+01 3chbD b.40.2.1 24865 1l8aA 886 4.87e+01 c.36.1.10,c.36.1.6,c.48.1.1 73677,73678,73679 1r5lA 262 4.99e+01 a.5.3.1,c.13.1.1 97099,97100 1dqpA 230 5.01e+01 1dqnA c.61.1.1 34069 1g2iA 166 5.01e+01 1g2iA c.23.16.2 31438 1gpiA 431 5.02e+01 b.29.1.10 65450 1fjgB 256 5.12e+01 1fjfB c.23.15.1 31400 2bgkA 278 5.14e+01 1bif 469 5.26e+01 1bif c.37.1.7,c.60.1.4 31961,34003 1c7qA 445 5.35e+01 2pgi c.80.1.2 35307 1vl6A 388 5.36e+01 c.2.1.7,c.58.1.3 108724,108725 1obdA 306 5.38e+01 d.143.1.1 86767 1yxyA 234 5.41e+01 1oneA 436 5.45e+01 4enl c.1.11.1,d.54.1.1 29200,38844 1ckeA 227 5.51e+01 1ckeA c.37.1.1 31846 1kb0A 677 5.51e+01 a.3.1.6,b.70.1.1 68378,68379 1tzjA 338 5.62e+01 2al2A 436 5.64e+01 2cxxA 190 5.65e+01 1d2eA 397 5.65e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 1aqzA 149 5.66e+01 1aqzA d.1.1.3 36238 1ohlA 342 5.76e+01 c.1.10.3 87035 1yc5A 246 5.80e+01 1fgs 428 5.80e+01 1fgs c.59.1.2,c.72.2.2 33959,34962 1ow1A 195 5.91e+01 b.131.1.3 93625 1blxA 326 5.91e+01 1hcl d.144.1.7 41596 1j0dA 341 5.92e+01 c.79.1.1 83902 2gnoA 305 5.93e+01 2bo4A 397 5.94e+01 3pviA 157 5.95e+01 3pviA c.52.1.6 33300 1s99A 200 5.97e+01 1k2xB 143 6.00e+01 2fcr 173 6.09e+01 1rcf c.23.5.1 31151 1om0A 274 6.18e+01 c.1.8.5 87058 1kafA 108 6.21e+01 d.199.1.1 68372 1efpB 252 6.23e+01 1efvB c.26.2.3 31636 1o57A 291 6.29e+01 a.4.5.40,c.61.1.1 92483,92484 1yhtA 367 6.34e+01 1fgxA 288 6.39e+01 1fgxA c.68.1.2 34508 1u1jA 765 6.60e+01 c.1.22.2,c.1.22.2 107590,107591 1a4yA 460 6.62e+01 1a4yA c.10.1.1 30852 1xreA 217 6.66e+01 1fo8A 343 6.68e+01 1foaA c.68.1.10 59927 2gvhA 288 6.71e+01 2g5cA 281 6.74e+01 1hv9A 456 6.79e+01 1fwyA b.81.1.4,c.68.1.5 28060,34518 1vdwA 254 6.85e+01 e.7.1.1 100569 2kinA 238 6.87e+01 1bg2 c.37.1.9 32190 1pot 325 6.91e+01 1pot c.94.1.1 35807 1szoA 257 6.92e+01 c.14.1.3 106164 3rabA 169 6.94e+01 1ctqA c.37.1.8 32018 1r5tA 142 6.97e+01 c.97.1.1 104812 1yal 218 7.16e+01 1cs8A d.3.1.1 37025 2al1A 436 7.18e+01 2av4A 162 7.44e+01 1gtmA 419 7.46e+01 1hwyA c.2.1.7,c.58.1.1 30223,33871 1oq9A 363 7.48e+01 a.25.1.2 87257 2fb1A 226 7.52e+01 1j5yA 187 7.55e+01 a.4.5.1,d.94.2.1 71592,71593 1ugpA 203 7.61e+01 d.149.1.1 107831 1w5rA 278 7.63e+01 1xkiA 162 7.64e+01 2ew0A 192 7.65e+01 1b8oA 284 7.66e+01 1b8oA c.56.2.1 33762 1jv2B 692 7.69e+01 b.1.15.1,c.62.1.1,d.200.1.1,g.3.11.6,g.3.11.6 67338,67339,67340,67341,67342 1gx3A 284 7.76e+01 d.3.1.5 70678 1pxwA 128 7.85e+01 d.79.3.1 95305 2gptA 523 7.89e+01 2h2tB 175 7.93e+01 1qwkA 317 8.03e+01 c.1.7.1 96482 1vggA 161 8.11e+01 1hdr 244 8.36e+01 1dhr c.2.1.2 29837 1sdsA 117 8.56e+01 d.79.3.1 105439 1r5rA 119 8.57e+01 a.39.2.1 97104 1xnzA 264 8.59e+01 1f2dA 341 8.60e+01 1f2dA c.79.1.1 35298 1gefA 123 8.68e+01 1gefA c.52.1.18 60465 1c24A 263 8.69e+01 1c24A d.127.1.1 41148 1h1nA 305 8.70e+01 c.1.8.3 70855 1ymiA 334 8.71e+01 1h6kZ 98 8.71e+01 d.58.7.1 60686 2ethA 154 8.81e+01 1jfuA 186 8.96e+01 c.47.1.10 62940 1y0nA 78 8.98e+01