# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1wqaA 455 1.80e+00 1aqzA 149 3.60e+00 1aqzA d.1.1.3 36238 1uby 367 3.81e+00 1uby a.128.1.1 19435 1oe4A 247 5.07e+00 c.18.1.3 86895 1euhA 475 5.10e+00 1euhA c.82.1.1 35369 1yq7A 374 5.99e+00 1h7wA 1025 6.59e+00 1h7wA a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 1pjcA 361 6.73e+00 1sayA c.2.1.4,c.23.12.2 30101,31361 1i5gA 144 7.02e+00 1ewxA c.47.1.10 61784 1a6q 382 7.31e+00 1a6q a.159.1.1,d.219.1.1 75801,75802 1gteA 1025 7.44e+00 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1yv5A 374 7.58e+00 2ez3A 302 7.73e+00 1a9xA 1058 7.99e+00 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 1upaA 573 8.08e+00 c.31.1.3,c.36.1.5,c.36.1.9 99714,99715,99716 1x6mA 196 8.59e+00 1ni9A 338 9.27e+00 e.7.1.2 85739 2f94F 350 9.32e+00 1xc3A 302 9.34e+00 1hyuA 521 1.07e+01 1hyuA c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1ad3A 452 1.07e+01 1ad3A c.82.1.1 35335 1vdc 333 1.24e+01 1trb c.3.1.5,c.3.1.5 30545,30546 1evlA 401 1.67e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 1cs0A 1073 1.69e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 2a65A 519 1.77e+01 1ubkS 267 1.84e+01 e.19.1.1 88423 1xx6A 191 1.88e+01 1wuiS 267 1.98e+01 2cvjA 180 2.05e+01 2akzA 439 2.24e+01 2fcr 173 2.47e+01 1rcf c.23.5.1 31151 1l6sA 323 2.55e+01 c.1.10.3 73627 1uxtA 501 2.63e+01 c.82.1.1 108125 1i8jA 323 2.76e+01 1b4kA c.1.10.3 61968 1tw4A 125 2.83e+01 1h2rS 267 2.96e+01 2frvA e.19.1.1 43310 1uk8A 282 3.00e+01 c.69.1.10 107907 2gv8A 447 3.16e+01 1te6A 439 3.18e+01 c.1.11.1,d.54.1.1 106797,106798 1vj0A 380 3.26e+01 b.35.1.2,c.2.1.1 100786,100787 2c9aA 259 3.26e+01 2cdcA 366 3.29e+01 1p6pA 125 3.31e+01 b.60.1.2 87839 1iupA 282 3.47e+01 c.69.1.10 76815 1nd4A 264 3.51e+01 d.144.1.6 91815 1d9tA 289 3.52e+01 1deaA 1xn7A 78 3.62e+01 1ne7A 289 3.67e+01 c.124.1.1 91833 1vqwA 457 3.84e+01 1trb 320 3.95e+01 1trb c.3.1.5,c.3.1.5 30529,30530 1s4nA 348 3.95e+01 c.68.1.16 98501 1nvmB 312 3.96e+01 c.2.1.3,d.81.1.1 86251,86252 1e3dA 266 4.00e+01 2frvA e.19.1.1 59188 1xknA 355 4.04e+01 1fjgP 88 4.17e+01 1emwA d.27.1.1 38444 1zxmA 400 4.17e+01 1r6uA 437 4.24e+01 c.26.1.1 97163 1vdwA 254 4.31e+01 e.7.1.1 100569 1io7A 368 4.42e+01 1f4tA a.104.1.1 18971 1eudA 311 4.54e+01 2scuA c.2.1.8,c.23.4.1 30312,31140 2b3yA 888 4.71e+01 1d3vA 323 4.71e+01 1d3vA c.42.1.1 32559 1ymqA 261 4.95e+01 1r4yA 136 5.01e+01 d.1.1.3 97056 1e3jA 352 5.12e+01 1e3jA b.35.1.2,c.2.1.1 24765,29781 1wqsA 173 5.20e+01 1u2hA 99 5.31e+01 1o6dA 163 5.52e+01 c.116.1.3 92567 2ab5A 269 5.52e+01 1z8oA 404 5.59e+01 1ju2A 536 5.61e+01 c.3.1.2,d.16.1.1 77169,77170 1h4vB 421 5.75e+01 1adjA c.51.1.1,d.104.1.1 60624,60625 2gu2A 312 5.82e+01 1qrrA 394 5.82e+01 1qrrA c.2.1.2 29824 2an1A 292 5.91e+01 2adcA 229 5.95e+01 1y66A 52 6.04e+01 1vi2A 300 6.10e+01 c.2.1.7,c.58.1.5 100726,100727 1jipA 403 6.25e+01 a.104.1.1 66748 2cunA 410 6.41e+01 1yemA 179 6.46e+01 1wxaA 116 6.48e+01 1uptB 60 6.50e+01 a.193.1.1 99768 1b25A 619 6.55e+01 1b25A a.110.1.1,d.152.1.1 19044,41796 1k3xA 262 6.60e+01 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1m5q1 130 6.60e+01 1kbvA 327 6.61e+01 b.6.1.3,b.6.1.3 68395,68396 1qo7A 394 6.61e+01 1qo7A c.69.1.11 34697 1pbgA 468 6.81e+01 1e70M c.1.8.4 28946 1w6tA 444 6.95e+01 1squA 155 7.02e+01 d.252.1.1 98971 1q1aA 289 7.20e+01 c.31.1.5 95561 1fl2A 310 7.28e+01 1hyuA c.3.1.5,c.3.1.5 59869,59870 1pmnA 364 7.36e+01 d.144.1.7 94907 1w1wA 430 7.76e+01 1ez0A 510 7.80e+01 1eyyA c.82.1.1 35385 1y02A 120 7.98e+01 2biiA 424 7.99e+01 2fnaA 357 8.03e+01 1yhpA 212 8.07e+01 1w44A 331 8.23e+01 1uzbA 516 8.24e+01 c.82.1.1 100220 1u8xX 472 8.36e+01 c.2.1.5,d.162.1.2 107741,107742 1v6tA 255 8.39e+01 1lddA 74 8.42e+01 a.4.5.34 73841 1adjA 421 8.43e+01 1adjA c.51.1.1,d.104.1.1 33188,40737 2f51A 118 8.50e+01 2a0mA 316 8.53e+01 1zb1A 392 8.78e+01